genome.fa.s113.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  19  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5370932--5370976	2	22.5	2	100	0	90	51	0	0	48	1.00
5371080--5371156	40	1.9	40	91	0	127	37	20	14	27	1.91
5377045--5377107	16	3.9	16	73	6	56	20	4	0	74	0.99
5378154--5378190	8	4.6	8	96	0	65	18	0	2	78	0.87
5378145--5378225	8	9.5	8	80	12	63	12	2	4	80	0.97
5378514--5378555	14	3.1	14	82	3	50	33	0	2	64	1.07
5385094--5385165	30	2.4	29	79	6	83	38	5	1	54	1.33
5385180--5385219	22	1.9	22	85	10	57	65	5	0	30	1.14
5385189--5385261	29	2.5	29	80	8	85	64	2	0	32	1.08
5399574--5399614	21	2.0	21	90	0	64	24	34	7	34	1.83
5406924--5406963	21	1.9	21	89	0	62	32	2	45	20	1.64
5409976--5410003	2	14.0	2	100	0	56	50	0	50	0	1.00
5412143--5412181	20	1.9	21	89	5	62	69	5	0	25	1.09
5412352--5412401	23	2.3	21	90	10	82	28	54	10	8	1.62
5413392--5413430	20	2.0	20	89	0	60	64	7	2	25	1.33
5413488--5413547	9	7.2	8	80	12	52	68	1	1	28	1.09
5413513--5413546	3	11.3	3	100	0	68	67	0	0	32	0.91
5413621--5413672	19	2.6	21	84	9	72	61	1	0	36	1.07
5414555--5415007	58	7.7	57	82	10	522	34	11	6	46	1.67
5414557--5415006	119	3.8	118	89	5	680	34	12	6	46	1.67
5415035--5415104	5	13.8	5	75	24	67	82	0	2	14	0.77
5415035--5415104	11	6.8	11	79	15	71	82	0	2	14	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5415040--5415097	19	3.0	19	82	12	82	84	0	1	13	0.70
5415046--5415110	26	2.4	28	84	10	89	81	0	4	13	0.84
5415030--5415119	22	3.7	24	77	19	82	78	0	4	16	0.90
5416230--5416268	16	2.5	15	87	8	51	66	5	0	28	1.12
5416215--5416273	9	5.9	10	81	18	54	62	6	0	30	1.21
5423589--5423724	68	2.0	68	95	1	245	33	14	17	33	1.91
5428754--5428970	36	6.1	35	74	5	157	19	19	12	48	1.80
5428657--5429082	107	4.0	108	76	4	355	20	20	12	46	1.82
5428780--5429084	71	4.3	71	74	3	227	20	22	12	44	1.84
5429024--5429529	142	3.6	143	81	1	556	18	21	14	45	1.85
5429205--5429301	35	2.7	36	75	9	90	14	25	17	42	1.87
5429292--5429363	36	2.0	36	81	7	85	19	16	15	48	1.81
5429398--5429647	106	2.4	107	81	3	281	18	22	15	43	1.87
5429609--5429800	104	1.8	104	82	6	246	22	22	9	45	1.81
5429674--5429751	35	2.2	36	81	6	88	21	17	8	51	1.73
5429644--5429838	104	1.9	104	82	6	252	21	20	9	48	1.77
5430302--5430340	19	2.1	18	85	9	51	69	2	0	28	1.02
5431287--5431351	28	2.2	30	81	10	73	32	35	15	16	1.91
5431684--5431715	3	10.7	3	100	0	64	65	0	0	34	0.93
5433095--5433119	13	1.9	13	100	0	50	28	8	16	48	1.74
5434546--5434686	76	1.9	77	89	3	223	36	9	8	44	1.68
5435392--5435435	16	2.8	16	82	0	52	63	4	0	31	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5443073--5443221	77	1.9	77	91	2	246	30	15	9	44	1.78
5444029--5444076	20	2.6	18	75	12	51	62	0	2	35	1.07
5444031--5444073	20	2.2	20	86	0	59	62	0	2	34	1.08
5444215--5444276	26	2.3	26	81	8	72	32	1	1	64	1.13
5444937--5444971	18	1.9	18	88	0	52	51	0	0	48	1.00
5445025--5445106	31	2.6	32	84	7	105	47	0	0	52	1.00
5445025--5445103	27	2.7	28	79	13	81	49	0	0	50	1.00
5446764--5446804	3	13.3	3	94	5	73	65	0	34	0	0.93
5449367--5449474	55	2.0	55	92	0	180	25	11	25	38	1.88
5465363--5465392	2	15.0	2	100	0	60	50	0	0	50	1.00
5476895--5476939	21	2.1	22	84	12	58	33	15	0	51	1.44
5514462--5514486	2	12.5	2	100	0	50	52	0	0	48	1.00
5519076--5519104	2	14.5	2	100	0	58	48	0	0	51	1.00
5520136--5520160	3	8.3	3	100	0	50	64	0	0	36	0.94
5524583--5524613	16	1.9	16	93	0	53	41	19	6	32	1.77
5525971--5526007	2	18.5	2	94	0	65	51	2	0	45	1.15
5526134--5526189	17	3.3	17	83	11	62	16	10	0	73	1.10
5526150--5526190	9	4.9	8	91	5	55	19	7	0	73	1.07
5526490--5526530	12	3.4	12	83	16	50	65	0	0	34	0.93
5528574--5528618	23	1.9	24	86	4	65	48	2	2	46	1.26
5530336--5530382	23	2.0	24	88	8	71	21	8	0	70	1.14
5549206--5549249	21	2.1	21	82	0	52	29	9	18	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5550972--5551117	52	2.8	51	83	4	150	43	7	21	27	1.79
5558888--5558921	11	3.1	11	91	8	52	41	2	0	55	1.15
5558903--5558927	13	1.9	13	100	0	50	48	0	0	52	1.00
5559394--5559419	13	2.0	13	100	0	52	30	0	0	69	0.89
5571130--5571154	4	6.2	4	100	0	50	72	0	0	28	0.86
5583245--5583284	12	3.6	12	77	16	50	50	0	0	50	1.00
5590007--5590089	41	2.0	41	97	0	157	22	18	12	46	1.81
5600064--5600111	18	2.7	18	96	3	89	52	0	0	47	1.00
5623680--5623708	2	14.5	2	100	0	58	0	51	0	48	1.00
5625183--5625212	2	15.0	2	100	0	60	50	0	0	50	1.00
5634747--5634793	23	2.0	24	83	4	60	48	12	4	34	1.61
5641462--5641594	71	1.9	71	90	0	212	33	13	12	39	1.83
5643971--5644035	23	2.6	25	79	18	64	43	1	1	53	1.19
5643971--5644043	23	2.9	24	77	20	62	45	1	1	52	1.18
5644233--5644286	22	2.5	22	84	0	72	55	0	0	44	0.99
5660101--5660134	2	17.0	2	100	0	68	0	50	0	50	1.00
5668306--5668372	6	11.3	6	75	20	61	44	0	2	52	1.16
5668326--5668364	14	3.0	14	85	14	57	48	0	5	46	1.24
5668301--5668377	12	6.5	11	77	15	66	44	0	2	53	1.14
5668445--5668506	25	2.6	23	75	12	70	45	4	0	50	1.23
5672199--5672256	27	2.2	26	84	3	71	37	0	1	60	1.07
5679610--5679670	30	2.1	28	82	11	70	50	3	3	42	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5680190--5680220	3	10.3	3	100	0	62	67	0	0	32	0.91
5691732--5691764	15	2.1	16	88	5	50	21	9	3	66	1.33
5692731--5692787	27	2.1	27	96	0	105	45	10	10	33	1.73
5704708--5704764	28	1.9	30	82	10	73	50	0	1	47	1.11
5707923--5707992	31	2.3	31	97	0	131	65	2	0	31	1.07
5711229--5711271	22	2.0	22	90	4	70	30	2	4	62	1.28
5717828--5717886	26	2.2	26	84	3	73	54	0	0	45	0.99
5717951--5718026	28	2.8	28	78	13	77	50	1	0	48	1.09
5718480--5718523	22	2.0	22	83	12	56	45	2	2	50	1.27
5718684--5718734	16	3.0	17	75	13	52	43	0	1	54	1.11
5735237--5735268	14	2.3	14	88	0	55	78	6	0	15	0.95
5736525--5736584	22	2.6	23	76	12	61	28	3	1	66	1.17
5737307--5737369	28	2.2	29	80	2	74	52	1	1	44	1.20
5737385--5737439	24	2.1	27	87	9	80	56	1	5	36	1.33
5744571--5744614	21	2.0	22	86	4	63	52	4	4	38	1.42
5752754--5752796	23	1.9	24	86	13	65	39	2	2	55	1.25
5758807--5758860	23	2.3	23	93	0	90	14	16	5	62	1.49
5774455--5774519	31	2.1	31	100	0	130	49	21	9	20	1.76
5782946--5783001	28	2.0	28	86	6	78	53	3	0	42	1.18
5783861--5783914	23	2.3	23	83	0	72	37	1	5	55	1.34
5789004--5789050	2	23.5	2	95	0	85	51	2	0	46	1.13
5791964--5791999	17	2.1	17	100	0	72	22	5	25	47	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5799106--5799137	8	4.0	8	95	0	55	37	28	12	21	1.90
5812747--5812916	78	2.2	76	80	9	184	50	6	7	35	1.57
5822206--5822262	10	5.2	10	73	19	51	61	1	1	35	1.17
5822205--5822262	24	2.6	21	86	10	80	60	1	1	36	1.17
5822292--5822327	18	2.1	18	89	5	56	30	0	5	63	1.17
5822437--5822470	7	4.9	7	92	0	59	52	0	2	44	1.16
5825054--5825104	25	2.0	25	85	11	68	47	7	7	37	1.62
5827339--5827501	78	2.1	77	80	7	179	50	4	9	34	1.55
5828403--5828477	39	1.9	39	94	5	134	40	14	4	41	1.65
5829708--5829748	17	2.4	17	84	8	57	80	0	4	14	0.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100