genome.fa.s113.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19866354

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  81  of  100  ( 11964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16759195--16759247	26	2.0	26	85	7	72	26	20	20	32	1.98
16758475--16759279	354	2.3	347	78	9	836	20	25	28	24	1.99
16758751--16759762	553	1.8	552	81	4	1277	20	27	28	23	1.99
16759905--16759957	26	2.0	26	92	7	90	26	22	20	30	1.98
16760263--16760315	26	2.0	26	85	7	72	28	28	18	24	1.98
16760812--16760864	26	2.0	26	92	0	88	28	28	18	24	1.98
16761435--16761487	26	2.0	26	88	0	79	30	28	16	24	1.97
16762306--16762358	26	2.0	26	88	0	79	26	20	20	32	1.98
16762808--16762860	26	2.0	26	89	7	81	24	24	22	28	2.00
16764034--16764084	26	2.0	26	92	0	84	33	23	15	27	1.95
16764826--16764878	26	2.0	26	88	0	79	28	26	18	26	1.98
16766937--16766989	26	2.0	26	82	13	65	30	26	16	26	1.97
16766963--16767464	158	3.2	157	75	5	485	19	26	30	23	1.98
16767438--16767490	26	2.0	26	89	7	81	26	22	20	30	1.98
16767387--16767771	195	2.0	196	87	3	553	21	27	27	23	1.99
16767998--16768440	159	2.8	159	72	5	392	25	29	25	19	1.98
16768515--16768565	26	2.0	26	96	0	93	25	15	27	31	1.96
16770075--16770128	26	2.1	26	89	0	81	31	24	22	22	1.98
16770953--16771004	26	2.0	25	92	3	86	28	15	25	30	1.96
16772150--16772202	26	2.0	26	85	0	70	26	16	26	30	1.97
16773018--16773070	26	2.0	26	88	0	79	26	22	26	24	2.00
16772609--16773603	514	1.9	514	80	2	1167	24	28	26	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16774820--16774870	26	2.0	26	88	7	77	31	15	23	29	1.95
16775554--16776059	160	3.2	156	75	9	443	25	28	25	20	1.99
16776034--16776085	26	2.0	26	88	0	77	26	17	26	28	1.97
16777499--16777548	26	1.9	26	87	0	73	28	14	26	32	1.94
16778220--16778272	26	2.0	26	85	7	72	32	18	20	28	1.97
16778404--16778456	26	2.0	26	89	7	81	28	20	26	24	1.99
16778429--16778892	159	2.9	158	76	3	360	22	30	27	19	1.98
16778905--16778957	26	2.0	26	92	7	90	26	20	26	26	1.99
16779102--16779154	26	2.0	26	85	7	72	30	20	22	26	1.98
16779563--16779613	26	2.0	26	84	7	68	29	15	23	31	1.95
16780283--16780335	26	2.0	26	92	7	90	28	20	24	26	1.99
16780626--16780678	26	2.0	26	82	7	63	28	16	24	30	1.97
16781133--16781420	159	1.8	158	81	2	362	21	31	28	18	1.96
16781428--16781480	26	2.0	26	85	7	72	28	18	26	26	1.98
16782490--16782539	25	2.0	26	88	4	75	26	18	24	32	1.97
16782711--16782763	26	2.0	26	89	7	81	30	20	22	26	1.98
16783934--16783986	26	2.0	26	85	7	72	32	20	22	24	1.98
16785679--16785841	84	2.0	83	81	3	193	18	24	33	23	1.97
16786906--16786960	24	2.3	24	93	0	92	20	20	34	25	1.96
16789895--16789947	26	2.0	26	88	0	79	26	15	26	32	1.95
16790800--16791088	157	1.8	159	81	3	359	24	29	26	19	1.99
16791153--16791654	159	3.2	157	78	6	473	23	29	26	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16791628--16791680	26	2.0	26	88	0	79	24	16	28	30	1.97
16792258--16792290	11	3.0	11	95	0	57	18	33	27	21	1.96
16792703--16792755	26	2.0	26	88	0	79	24	16	28	30	1.97
16792901--16792951	26	2.0	26	88	7	77	31	13	25	29	1.94
16792927--16793467	159	3.4	158	77	3	514	24	28	26	20	1.99
16794260--16794562	158	1.9	158	79	6	337	25	31	25	17	1.97
16794237--16795202	501	1.9	500	83	3	1244	24	28	26	20	1.99
16795077--16795129	26	2.0	26	85	7	72	24	16	28	30	1.97
16796138--16796190	26	2.0	26	92	7	90	26	20	26	26	1.99
16796360--16796781	159	2.8	147	76	8	366	22	29	29	18	1.97
16796824--16796876	26	2.0	26	92	0	88	24	18	28	28	1.98
16797000--16797052	26	2.0	26	85	7	72	32	18	20	28	1.97
16797025--16797547	159	3.3	157	78	5	500	24	29	26	19	1.98
16797095--16797566	159	3.0	157	77	6	511	23	29	27	19	1.98
16801537--16801641	55	1.9	55	88	0	156	23	32	23	20	1.98
16803414--16803466	26	2.0	26	92	7	90	30	20	22	26	1.98
16804417--16804469	26	2.0	26	88	0	79	24	16	28	30	1.97
16803412--16804571	502	2.3	500	81	1	1291	24	28	26	21	1.99
16806011--16806451	159	2.8	156	74	9	381	25	30	26	17	1.98
16806488--16806540	26	2.0	26	88	0	79	26	18	26	28	1.98
16806984--16807390	158	2.6	154	75	7	359	22	30	25	21	1.99
16807364--16807416	26	2.0	26	88	0	79	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16807916--16808887	513	1.9	514	82	3	1231	24	28	25	20	1.99
16809640--16809692	26	2.0	26	85	0	70	30	18	20	30	1.97
16810636--16810688	26	2.0	26	88	0	79	24	18	26	30	1.98
16811417--16811469	26	2.0	26	88	0	79	24	20	28	26	1.99
16811765--16812301	158	3.4	158	77	5	401	22	29	26	21	1.99
16812663--16812715	26	2.0	26	89	7	81	32	18	20	28	1.97
16812688--16813052	158	2.3	158	78	4	367	26	28	24	20	1.99
16812674--16813767	514	2.2	509	80	5	1216	24	28	25	21	1.99
16814056--16814108	26	2.0	26	89	7	81	28	18	24	28	1.98
16823835--16823887	26	2.0	26	92	7	90	28	20	24	26	1.99
16823861--16824363	159	3.2	156	75	10	392	23	30	26	19	1.98
16824716--16824768	26	2.0	26	89	7	81	28	18	24	28	1.98
16824741--16825156	159	2.6	157	77	7	419	24	29	27	17	1.98
16825932--16825981	26	1.9	26	92	8	84	32	18	24	26	1.97
16826638--16827007	184	2.0	184	86	2	510	23	27	26	22	2.00
16826797--16826849	26	2.0	26	82	13	65	28	15	24	32	1.95
16826822--16827250	159	2.7	157	77	6	427	23	28	27	20	1.99
16827297--16827349	26	2.0	26	85	0	70	28	18	24	28	1.98
16827506--16827556	26	2.0	26	92	7	86	31	19	21	27	1.97
16828833--16828885	26	2.0	26	85	0	70	28	16	26	28	1.97
16828678--16829217	184	2.9	182	81	4	584	25	26	27	21	1.99
16829017--16829069	26	2.0	26	86	13	74	28	16	24	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16829494--16829876	196	1.9	196	81	3	448	22	27	26	23	2.00
16828685--16830340	697	2.4	682	79	6	1773	24	27	26	21	1.99
16830958--16831010	26	2.0	26	85	0	70	28	18	24	28	1.98
16830926--16831293	197	1.9	197	86	3	526	23	27	26	22	2.00
16831181--16831681	158	3.2	155	74	7	447	25	29	24	20	1.99
16831655--16831707	26	2.0	26	85	7	72	26	16	26	30	1.97
16832718--16832770	26	2.0	26	88	0	79	24	20	28	26	1.99
16832915--16832967	26	2.0	26	85	7	72	30	18	22	28	1.98
16833479--16833521	22	2.0	22	85	0	59	34	13	39	11	1.82
16834312--16834364	26	2.0	26	85	7	72	30	18	22	28	1.98
16834337--16834789	159	2.8	159	84	1	620	22	30	28	18	1.97
16835069--16835123	26	2.1	26	86	0	74	20	16	30	32	1.94
16835277--16835328	26	2.0	26	85	3	70	26	21	25	26	1.99
16835491--16835914	158	2.7	159	74	3	415	22	31	25	20	1.98
16835960--16836325	197	1.9	196	83	2	484	22	28	27	21	1.99
16836191--16836850	158	4.2	157	78	5	612	23	30	26	19	1.98
16836191--16836850	317	2.1	316	81	5	735	23	30	26	19	1.98
16844072--16844121	26	1.9	26	88	8	75	30	20	26	24	1.98
16844621--16844671	26	2.0	26	96	0	93	27	19	25	27	1.99
16844830--16844882	26	2.0	26	92	7	90	28	20	24	26	1.99
16843763--16845130	553	2.5	550	79	4	1290	24	27	26	21	1.99
16846055--16846104	26	1.9	26	88	8	75	32	16	22	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16846606--16846658	26	2.0	26	85	0	70	28	15	24	32	1.95
16847329--16847381	26	2.0	26	89	7	81	28	18	24	28	1.98
16847671--16847723	26	2.0	26	92	0	88	30	16	22	30	1.96
16853008--16853506	159	3.1	158	74	5	488	23	31	26	18	1.97
16853554--16853604	26	2.0	26	84	7	68	29	17	25	27	1.98
16853577--16853906	171	1.9	171	80	1	383	23	30	26	20	1.98
16853920--16853972	26	2.0	26	85	7	72	30	18	22	28	1.98
16855119--16855171	26	2.0	26	89	7	81	32	20	20	26	1.98
16855145--16855650	159	3.2	158	77	6	497	22	29	27	20	1.98
16856074--16856129	26	2.2	26	90	6	87	28	17	23	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100