genome.fa.s168.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  10  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1766463--1766491	2	14.5	2	100	0	58	51	0	0	48	1.00
1768857--1768910	26	2.1	26	96	0	99	35	18	9	37	1.83
1769007--1769052	8	5.8	8	97	0	83	52	10	0	36	1.37
1774463--1774510	19	2.5	18	78	21	53	50	0	0	50	1.00
1775566--1775639	31	2.4	31	83	2	94	48	0	2	48	1.15
1775698--1775790	29	3.1	29	84	7	98	51	1	0	47	1.07
1775720--1775790	29	2.4	29	90	6	108	47	1	0	50	1.09
1775740--1775774	17	2.0	17	88	5	52	51	0	0	48	1.00
1776269--1776296	2	14.0	2	100	0	56	50	0	0	50	1.00
1783594--1783623	7	4.3	7	100	0	60	46	0	0	53	1.00
1794369--1794393	13	1.9	13	100	0	50	20	8	8	64	1.46
1796057--1796103	24	2.0	23	87	4	67	14	0	8	76	1.01
1796147--1796309	77	2.1	78	77	5	170	52	6	6	34	1.54
1796160--1796304	76	1.9	78	82	5	188	48	7	7	35	1.60
1796241--1796417	61	2.9	62	82	9	193	51	5	9	32	1.58
1800372--1800425	15	3.6	16	76	19	55	81	0	9	9	0.88
1800395--1800439	13	3.5	13	80	19	51	82	0	11	6	0.84
1800371--1800442	28	2.6	27	79	12	76	79	0	12	8	0.94
1800395--1800445	12	4.2	12	80	11	52	82	0	11	5	0.83
1801706--1802122	46	9.1	46	84	2	511	37	9	14	38	1.79
1801706--1802122	138	3.0	138	85	1	563	37	9	14	38	1.79
1802145--1802300	21	7.7	21	71	13	121	38	7	16	37	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1802106--1802280	79	2.2	79	92	0	287	38	8	17	36	1.79
1802346--1802455	42	2.6	42	74	8	107	36	13	18	31	1.90
1803147--1803176	13	2.3	13	94	0	51	20	6	3	70	1.25
1804825--1804866	4	10.8	4	79	5	50	19	2	4	73	1.12
1819782--1819862	32	2.6	31	86	3	101	16	6	28	49	1.69
1820648--1820694	2	23.5	2	86	0	67	42	0	2	55	1.12
1821506--1821539	9	3.8	9	84	0	50	11	52	2	32	1.53
1823577--1823644	30	2.3	30	86	0	91	41	19	8	30	1.82
1826599--1826644	21	2.1	22	84	4	58	65	0	0	34	0.93
1826600--1826664	33	2.0	33	84	6	87	67	0	0	32	0.91
1828806--1828902	16	5.7	17	78	13	85	54	0	0	45	0.99
1828806--1828902	17	5.7	15	70	21	59	54	0	0	45	0.99
1828806--1828892	37	2.5	35	80	15	101	52	0	0	47	1.00
1828931--1829040	31	3.6	31	73	20	106	43	0	2	53	1.15
1828931--1828988	18	3.5	18	84	15	81	43	0	0	56	0.99
1828931--1829051	30	3.9	33	71	19	102	42	0	2	54	1.13
1828930--1829066	22	6.9	20	70	22	78	43	0	2	54	1.12
1829553--1829687	31	4.3	31	77	8	139	27	9	20	42	1.83
1829553--1829687	63	2.1	63	86	5	184	27	9	20	42	1.83
1830768--1830866	32	3.1	32	73	8	94	50	2	2	45	1.24
1830811--1830859	26	1.9	26	83	4	64	51	2	2	44	1.24
1833662--1833704	16	2.7	15	86	10	59	0	9	4	86	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1833743--1834076	42	7.9	42	86	4	442	45	17	12	23	1.83
1834340--1834398	22	2.8	21	80	10	66	38	11	8	40	1.72
1835250--1835300	19	2.7	19	85	11	61	9	5	1	82	0.91
1845696--1846061	202	1.8	204	80	9	453	35	9	7	48	1.63
1847432--1847470	21	1.9	20	84	5	51	17	12	0	69	1.19
1849303--1849452	18	8.5	18	66	15	64	42	1	3	53	1.26
1849388--1849494	49	2.2	50	80	11	123	43	2	2	50	1.31
1850716--1850753	2	19.0	2	94	0	67	47	0	2	50	1.15
1850856--1850911	26	2.2	26	87	3	78	51	1	1	44	1.22
1851252--1851297	12	3.8	12	82	0	56	23	58	6	10	1.55
1851251--1851339	36	2.5	36	85	10	105	24	59	5	10	1.51
1851266--1851351	33	2.6	31	77	15	84	22	60	5	11	1.52
1851276--1851352	18	4.3	18	72	9	59	22	59	5	12	1.53
1851324--1851402	27	3.0	24	65	19	59	26	55	5	12	1.57
1851431--1851471	18	2.3	18	86	0	55	24	63	4	7	1.40
1851344--1851471	66	1.9	66	80	0	148	24	60	4	10	1.47
1851492--1851562	24	3.0	24	85	0	88	25	60	1	12	1.40
1852679--1852750	36	2.0	36	91	0	117	33	15	2	48	1.59
1858668--1858717	24	2.1	24	84	0	64	30	12	6	52	1.62
1864776--1864817	18	2.4	17	84	4	57	57	9	4	28	1.51
1866151--1866209	13	4.4	13	72	6	55	47	0	0	52	1.00
1866553--1866620	30	2.3	30	82	10	77	45	10	0	44	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1868046--1868092	10	4.5	11	82	17	57	44	0	0	55	0.99
1870662--1870699	19	2.0	19	100	0	76	31	5	21	42	1.75
1884085--1884122	8	4.8	8	84	9	51	73	2	2	21	1.07
1890651--1890696	15	3.1	15	84	6	58	78	0	10	10	0.97
1890660--1890694	7	4.9	7	86	6	52	82	0	5	11	0.82
1890641--1890715	26	3.1	23	79	11	62	74	0	13	12	1.07
1892110--1892400	45	6.5	45	87	2	406	25	12	18	43	1.85
1892110--1892400	91	3.2	90	85	3	415	25	12	18	43	1.85
1892585--1893015	45	9.7	45	85	6	592	25	13	17	43	1.85
1892578--1893015	175	2.5	178	87	6	615	25	13	17	43	1.86
1893008--1893093	44	2.0	44	82	8	106	22	12	20	44	1.85
1893266--1893322	4	15.0	4	78	10	66	24	1	1	71	1.04
1895534--1895577	2	22.0	2	100	0	88	50	0	0	50	1.00
1895412--1895721	165	1.9	165	94	0	548	39	11	10	39	1.76
1895681--1895721	2	20.5	2	94	0	73	48	0	0	51	1.00
1897783--1897821	17	2.2	18	90	4	62	69	7	2	20	1.26
1898212--1898263	26	2.0	26	85	14	72	13	5	11	69	1.35
1899007--1899032	10	2.6	10	100	0	52	57	0	0	42	0.98
1901332--1901573	58	4.0	58	79	11	211	37	9	4	48	1.57
1901332--1901576	68	4.0	59	80	13	264	37	8	4	48	1.56
1901748--1901812	20	3.3	19	78	18	71	75	13	1	9	1.11
1901740--1901812	19	3.7	19	76	8	58	76	12	1	9	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1901757--1901814	19	3.1	19	76	14	66	74	13	1	10	1.15
1902316--1902356	19	2.3	19	83	8	50	46	12	12	29	1.77
1904426--1904484	21	2.9	21	75	12	59	52	5	1	40	1.33
1904546--1904660	42	2.6	44	80	8	135	45	7	6	40	1.58
1904592--1904653	21	3.0	21	73	17	65	43	9	6	40	1.63
1904684--1904736	21	2.5	21	87	6	72	49	5	9	35	1.59
1906846--1906887	12	3.5	12	81	12	59	66	0	0	33	0.92
1906843--1906896	24	2.3	24	96	3	101	68	0	0	31	0.90
1908901--1908947	23	2.0	23	91	0	76	51	2	2	44	1.25
1908894--1908957	23	3.0	20	82	10	74	46	1	1	50	1.20
1908975--1909012	16	2.4	17	86	8	53	60	0	0	39	0.97
1913023--1913068	21	2.3	21	85	7	60	41	0	2	56	1.11
1917694--1917733	10	3.8	10	83	9	53	55	2	42	0	1.13
1917866--1917920	15	3.5	15	87	5	65	50	1	43	3	1.30
1917961--1918015	3	18.3	3	81	7	58	34	1	32	30	1.69
1917952--1918015	15	4.3	15	81	0	74	34	1	32	31	1.68
1918628--1918682	2	28.0	2	92	3	94	0	49	0	50	1.00
1921693--1921832	48	2.9	48	93	0	226	27	22	21	28	1.99
1922949--1922996	20	2.5	20	86	10	64	75	2	16	6	1.11
1924207--1924283	8	9.4	8	78	5	55	41	7	6	44	1.59
1924193--1924243	16	3.1	16	78	15	59	37	11	9	41	1.75
1924256--1924283	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1938941--1938987	19	2.5	20	79	10	62	57	0	2	40	1.11
1946623--1946760	48	2.8	49	94	2	233	30	26	15	27	1.96
1947080--1947135	27	2.1	27	100	0	112	26	19	25	28	1.99
1950640--1950673	15	2.3	15	89	0	50	55	0	8	35	1.31
1959982--1960020	10	3.7	11	80	13	55	51	0	0	48	1.00
1960676--1960730	21	2.4	25	82	14	73	45	1	1	50	1.22
1960726--1960770	19	2.3	19	80	3	54	64	2	0	33	1.06
1971868--1971923	23	2.5	23	83	11	64	55	1	3	39	1.28
1978980--1979021	21	2.0	21	85	0	57	33	2	38	26	1.69
1979370--1979421	27	1.9	27	88	7	79	32	38	3	25	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100