genome.fa.s168.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  17  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3188231--3188279	24	2.0	24	92	0	80	30	18	16	34	1.93
3193297--3193690	197	2.0	196	84	5	510	33	20	12	32	1.91
3193653--3193700	24	2.0	25	87	4	71	31	29	8	31	1.87
3195757--3195873	60	2.0	61	87	3	175	34	5	18	41	1.73
3196322--3196383	26	2.4	26	77	0	70	43	1	12	41	1.53
3196850--3196892	18	2.3	18	84	11	52	81	4	11	2	0.93
3196850--3196892	19	2.3	18	84	4	50	81	4	11	2	0.93
3209936--3210015	27	3.0	27	77	5	81	40	3	15	41	1.64
3211028--3211269	46	5.4	46	79	7	167	45	10	10	33	1.74
3212601--3212705	36	2.9	37	79	11	101	34	9	24	31	1.88
3222607--3222642	17	2.1	17	89	0	54	30	13	8	47	1.73
3236907--3237074	46	3.7	46	80	6	189	32	11	10	45	1.75
3236835--3237074	46	5.4	45	74	11	163	32	9	11	45	1.73
3239190--3239222	17	1.9	17	88	11	50	36	9	3	51	1.49
3240305--3240950	314	2.1	303	82	6	771	35	12	14	37	1.84
3244335--3244581	80	3.1	80	83	6	313	45	23	6	24	1.77
3246607--3246666	32	1.9	31	86	3	84	18	1	3	76	1.00
3246897--3246965	27	2.5	28	83	4	77	10	4	13	72	1.25
3247920--3248076	52	3.0	52	89	1	235	26	24	8	40	1.83
3248300--3248337	20	1.9	20	84	10	51	34	2	0	63	1.09
3250410--3250634	112	2.0	112	100	0	450	34	8	19	38	1.81
3252000--3252024	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3266929--3267082	57	2.7	57	84	8	181	36	12	7	43	1.71
3266928--3267083	58	2.7	57	82	9	183	35	12	7	43	1.72
3267063--3267101	17	2.2	18	90	4	62	25	5	5	64	1.35
3269866--3270285	41	10.1	41	81	5	364	38	19	15	26	1.92
3269866--3270173	81	3.7	83	85	3	370	38	19	16	25	1.92
3269865--3270215	42	8.5	41	83	5	350	38	19	16	25	1.92
3269865--3270215	81	4.2	82	83	4	357	38	19	16	25	1.92
3270563--3270666	43	2.4	43	79	10	122	33	17	12	36	1.87
3272161--3272220	9	6.4	9	71	21	52	8	16	0	75	1.04
3276906--3277074	60	2.9	58	89	2	239	35	11	8	44	1.72
3285671--3285704	16	2.1	16	88	0	50	29	2	26	41	1.70
3285665--3285696	16	2.0	16	93	0	55	34	0	21	43	1.53
3287572--3287652	27	2.9	28	85	3	119	35	8	20	34	1.84
3299970--3300183	58	3.7	57	86	7	290	35	13	7	43	1.71
3300163--3300204	19	2.2	20	86	4	59	23	7	4	64	1.38
3302946--3303409	45	11.0	42	83	5	429	40	19	15	24	1.90
3302979--3303376	41	9.5	41	85	3	395	39	20	16	24	1.92
3302944--3303416	41	11.2	41	80	4	338	40	19	15	24	1.90
3310058--3310270	58	3.7	57	86	4	268	36	12	7	43	1.71
3310059--3310270	116	1.8	115	87	5	320	35	12	8	43	1.72
3310383--3310534	75	2.0	75	93	2	261	31	22	17	28	1.97
3311424--3311473	25	2.0	25	100	0	100	20	4	36	40	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3315718--3315767	25	2.0	25	100	0	100	20	4	36	40	1.71
3323678--3323711	16	2.1	16	88	0	50	29	2	26	41	1.70
3323672--3323703	16	2.0	16	93	0	55	34	0	21	43	1.53
3323836--3323885	24	2.1	23	85	14	66	30	2	18	50	1.58
3339563--3339593	16	1.9	16	93	0	53	32	3	19	45	1.66
3347411--3347436	3	8.7	3	100	0	52	30	0	0	69	0.89
3351808--3351858	3	17.3	3	95	4	95	31	0	0	68	0.90
3353245--3353642	144	2.8	142	79	4	413	33	12	11	42	1.79
3358773--3358826	20	2.7	20	72	11	56	50	5	11	33	1.61
3359013--3359116	5	19.8	5	70	18	52	22	4	0	72	1.10
3359011--3359044	17	2.0	17	100	0	68	17	5	0	76	0.98
3359013--3359116	11	9.8	11	66	15	58	22	4	0	72	1.10
3359002--3359116	42	2.8	41	81	10	126	24	6	1	67	1.22
3359054--3359114	25	2.4	26	81	10	65	21	4	0	73	1.01
3361922--3361984	31	2.0	31	96	0	117	25	14	6	53	1.64
3365348--3365387	18	2.2	19	86	4	55	45	7	5	42	1.54
3365560--3365594	16	2.2	16	89	0	52	34	2	0	62	1.10
3379386--3379448	31	2.0	31	96	0	117	25	14	6	53	1.64
3381539--3381576	1	38.0	1	89	0	58	94	0	5	0	0.30
3381942--3381966	12	2.1	12	100	0	50	68	0	0	32	0.90
3382990--3383024	16	2.2	16	89	0	52	34	0	2	62	1.10
3383068--3383104	16	2.3	16	86	13	58	45	0	0	54	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3386227--3386270	22	2.0	22	90	0	70	36	4	9	50	1.55
3386407--3386463	25	2.2	26	78	15	64	21	12	7	59	1.56
3386414--3386464	25	2.0	26	85	7	70	21	9	7	60	1.53
3389618--3389858	131	1.9	129	90	3	385	41	14	13	30	1.85
3393970--3394072	52	2.0	52	86	0	143	47	10	17	24	1.79
3394189--3394234	20	2.3	20	96	0	83	13	0	34	52	1.40
3394282--3394343	35	1.9	33	84	15	85	25	1	29	43	1.64
3395370--3395399	15	1.9	16	93	6	53	66	0	23	10	1.21
3395369--3395410	16	2.6	16	77	14	50	69	0	21	9	1.17
3395546--3395639	38	2.4	38	84	8	120	17	3	58	21	1.52
3396161--3396209	25	1.9	26	91	4	82	46	2	10	40	1.49
3397632--3397694	28	2.2	28	86	5	83	46	33	0	20	1.51
3399769--3399801	15	2.1	16	88	5	50	51	0	9	39	1.34
3406840--3406909	34	2.1	34	97	0	131	25	30	1	42	1.64
3414118--3414176	29	2.0	29	83	0	73	28	1	20	49	1.59
3414309--3414358	21	2.4	21	89	0	73	22	0	28	50	1.49
3414334--3414408	14	5.3	14	72	15	55	24	1	24	50	1.57
3414327--3414415	28	3.1	28	76	7	90	24	1	24	49	1.57
3414320--3414364	21	2.1	21	87	0	63	20	0	24	55	1.43
3414200--3414386	79	2.4	77	73	12	175	21	1	28	48	1.60
3414334--3414447	29	4.0	28	76	8	104	28	0	22	47	1.57
3414725--3414760	3	12.3	3	94	5	65	30	0	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3414910--3414971	22	2.7	23	85	9	74	70	4	0	24	1.06
3414953--3414981	11	2.7	11	94	5	51	72	6	0	20	1.07
3416082--3416120	12	3.2	13	85	10	55	20	0	0	79	0.73
3416085--3416130	24	2.0	21	88	12	65	23	0	0	76	0.79
3416652--3416681	15	2.0	15	100	0	60	33	6	6	53	1.53
3417016--3417083	32	2.2	31	86	7	93	35	1	2	60	1.21
3428356--3428570	109	2.0	109	96	0	394	33	16	17	33	1.92
3428620--3428659	22	1.9	20	85	10	53	45	10	0	45	1.37
3430844--3430908	25	2.5	25	82	5	76	24	4	3	67	1.24
3430839--3430884	14	3.5	14	77	14	53	23	2	2	71	1.08
3430925--3431027	34	3.1	33	71	14	88	19	5	1	72	1.14
3430943--3431052	45	2.5	44	74	11	100	21	5	3	69	1.25
3431975--3432046	26	2.8	25	85	12	85	13	5	2	77	1.05
3431971--3432046	32	2.4	32	86	6	109	14	5	2	77	1.05
3431964--3432021	6	9.5	6	78	10	64	13	3	3	79	0.99
3432068--3432532	117	4.0	116	91	4	731	46	6	11	35	1.64
3432069--3432532	58	7.9	58	90	6	697	46	6	11	35	1.64
3436563--3436651	27	3.2	27	62	20	65	37	14	6	41	1.72
3436370--3436734	60	6.1	59	83	8	443	32	11	7	47	1.69
3436708--3436740	17	1.9	17	88	11	50	24	0	3	72	0.98
3436803--3436854	20	2.6	19	82	8	68	82	3	1	11	0.88
3436803--3436853	8	6.4	8	82	6	50	82	3	1	11	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3436830--3436882	28	1.9	28	88	3	81	81	3	7	7	0.99
3438533--3438571	10	3.7	10	93	6	60	84	0	15	0	0.62
3438517--3438579	20	3.0	20	79	9	65	79	0	15	4	0.90
3438536--3438589	20	2.8	19	78	8	56	81	0	14	3	0.82
3439832--3440377	41	13.1	41	86	3	716	24	16	22	36	1.94
3439832--3440377	83	6.6	83	89	1	772	24	16	22	36	1.94
3440384--3440428	14	3.1	14	87	6	63	86	4	2	6	0.76
3440384--3440422	17	2.4	17	91	4	62	89	5	0	5	0.58
3440569--3440620	12	4.4	12	80	11	63	23	0	3	73	1.00
3440569--3440643	25	3.1	25	83	7	75	22	5	4	68	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100