genome.fa.s168.2.7.7.80.10.50.1000.90.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  90  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15666346--15666444	44	2.2	44	85	0	126	46	5	10	38	1.60
15666346--15666444	22	4.5	22	73	5	92	46	5	10	38	1.60
15666548--15666618	22	3.2	22	83	0	97	47	7	7	38	1.58
15666555--15666687	22	6.0	22	73	6	72	48	7	9	34	1.65
15667213--15667244	12	2.7	12	95	0	55	46	6	3	43	1.44
15669223--15669250	2	14.0	2	100	0	56	50	0	0	50	1.00
15680953--15681034	38	2.2	38	95	2	148	40	13	8	37	1.75
15692971--15693070	34	2.9	34	88	7	139	39	3	10	48	1.52
15692996--15693056	19	3.4	19	70	25	69	34	1	13	50	1.51
15692999--15693062	20	3.5	20	68	29	61	37	3	10	48	1.54
15692971--15693086	34	3.4	34	85	8	121	39	4	11	44	1.60
15693060--15693112	26	2.2	23	83	10	61	52	5	11	30	1.60
15693099--15693134	16	2.2	17	90	5	56	63	8	11	16	1.49
15693126--15693804	180	3.8	180	77	4	658	41	7	6	44	1.59
15693985--15696341	181	13.1	179	74	8	1522	42	9	7	40	1.65
15694869--15694905	18	2.0	19	94	5	67	48	5	8	37	1.56
15696130--15696162	18	1.9	17	88	11	50	39	6	6	48	1.53
15696224--15696471	133	1.9	133	85	0	343	44	8	7	39	1.64
15696342--15698955	181	14.5	178	77	5	2017	42	9	7	40	1.65
15696343--15698957	361	7.3	359	77	5	2047	42	9	7	40	1.65
15704325--15704357	18	1.9	17	88	11	50	39	6	6	48	1.53
15704141--15704485	182	1.9	182	80	7	407	41	6	10	41	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15704543--15705567	181	5.7	177	76	4	829	42	9	8	39	1.68
15704580--15705569	358	2.7	362	77	5	918	42	9	8	39	1.68
15705425--15705697	146	1.9	146	82	1	341	43	8	8	40	1.64
15706067--15707109	179	5.8	177	74	10	509	40	9	8	41	1.67
15707132--15707178	22	2.1	22	96	0	85	46	8	21	23	1.78
15706026--15708488	181	13.6	179	70	11	1077	40	9	9	40	1.70
15708537--15709150	181	3.4	178	82	5	639	39	7	8	43	1.64
15708652--15709663	516	2.0	518	79	4	1105	39	8	9	42	1.67
15709168--15710238	181	6.0	177	74	6	784	40	7	9	41	1.66
15709237--15710208	361	2.7	358	77	5	944	40	7	9	41	1.66
15710193--15710331	67	2.1	68	90	1	217	44	7	11	36	1.68
15710289--15711283	180	5.6	177	73	11	596	39	8	10	41	1.71
15710450--15710984	181	3.0	180	80	6	476	38	9	9	42	1.70
15711288--15719414	181	44.9	181	69	13	2049	39	7	10	41	1.68
15711441--15755510	539	81.9	536	69	13	4707	39	8	10	41	1.69
15711288--15728122	538	31.4	538	69	13	3520	40	7	10	41	1.68
15714942--15723889	181	50.4	173	71	11	1329	40	7	10	41	1.68
15714942--15719325	357	12.3	349	72	11	1456	39	7	10	42	1.68
15719542--15719816	145	1.9	145	82	8	353	38	6	10	44	1.66
15719656--15723882	181	23.6	181	75	8	3068	40	7	9	41	1.67
15723723--15724032	157	2.0	157	80	3	345	38	8	10	42	1.70
15724141--15724455	169	1.9	169	80	6	379	41	7	8	41	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15724609--15725809	181	6.8	180	74	11	899	40	8	9	42	1.67
15723950--15725829	182	10.6	179	73	10	1228	40	8	9	41	1.67
15725680--15725961	152	1.8	153	84	3	381	37	6	9	46	1.63
15725830--15728092	180	12.7	177	73	10	1105	39	7	10	42	1.68
15727569--15728088	181	2.9	181	78	5	475	40	6	10	41	1.66
15728781--15730303	178	8.5	175	74	8	756	39	8	10	41	1.71
15728772--15733526	355	13.4	352	73	12	2257	40	8	10	41	1.69
15728849--15732988	537	7.8	534	73	11	1930	40	8	10	41	1.69
15730310--15733528	181	18.0	181	75	7	2358	40	8	9	41	1.68
15730310--15755490	720	35.3	708	72	11	8064	39	8	10	41	1.69
15732395--15733029	344	1.8	344	80	6	750	40	8	8	42	1.65
15733415--15733659	134	1.8	135	84	2	341	35	8	7	48	1.62
15733550--15737165	181	20.2	179	74	8	2180	39	8	10	41	1.70
15733649--15755510	358	61.2	353	70	12	5401	39	8	10	41	1.69
15737179--15747584	181	58.1	181	75	7	7516	39	8	10	41	1.68
15737179--15755512	539	34.2	536	73	10	9991	39	8	10	41	1.69
15737179--15755509	362	51.2	362	73	10	10495	39	8	10	41	1.69
15746331--15747578	179	7.0	180	78	6	1130	40	8	9	41	1.67
15747867--15749561	177	9.6	177	74	9	1155	40	7	10	41	1.68
15749593--15750999	182	7.8	180	77	6	1090	39	7	10	42	1.67
15749593--15750987	543	2.6	538	79	6	1333	39	7	10	42	1.67
15751976--15752293	171	1.8	172	82	4	408	42	7	8	41	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15753188--15753235	18	2.7	19	81	15	66	43	6	6	43	1.54
15752564--15755510	181	16.5	180	75	8	2131	40	8	10	41	1.69
15751114--15755510	721	6.1	709	75	9	2525	39	8	10	41	1.69
15755160--15755509	175	2.0	176	82	1	434	38	10	10	40	1.73
15755763--15755795	18	1.9	17	88	11	50	48	6	6	39	1.53
15755758--15755804	19	2.7	18	80	12	62	44	4	10	40	1.59
15755821--15756765	181	5.3	181	79	4	841	41	10	8	39	1.70
15756636--15756885	130	1.9	129	84	4	333	41	11	8	38	1.72
15756760--15757455	181	3.9	179	77	6	690	42	9	9	39	1.69
15756759--15757598	359	2.3	355	78	9	764	41	9	9	39	1.69
15757567--15757694	67	1.9	67	90	0	202	37	11	8	42	1.72
15757635--15759100	181	8.3	180	72	10	763	40	9	7	41	1.67
15757770--15758458	349	2.0	349	81	5	822	42	8	6	41	1.62
15758749--15758799	21	2.4	22	87	9	70	52	1	11	33	1.49
15759770--15759831	23	2.6	25	80	10	76	61	1	1	35	1.16
15759123--15761164	182	11.4	181	75	7	1443	41	9	8	40	1.67
15759118--15763695	359	12.9	354	69	15	1331	42	9	8	40	1.67
15761218--15763695	181	13.7	180	77	7	1962	42	10	8	39	1.68
15763697--15763839	56	2.5	56	98	1	277	32	13	9	44	1.76
15763806--15764679	181	4.8	180	77	4	630	41	9	8	41	1.67
15764680--15767886	181	18.0	180	76	8	2336	42	9	7	41	1.65
15765595--15765894	163	1.8	163	86	4	435	40	10	7	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15765772--15771223	181	30.7	172	69	14	1044	41	9	7	41	1.65
15767730--15768022	141	2.0	143	83	7	373	42	9	7	39	1.67
15767872--15771215	180	18.8	178	74	9	2110	41	9	7	40	1.66
15771395--15772416	524	1.9	525	79	6	1111	41	9	8	40	1.69
15772497--15774262	363	4.9	362	76	6	1460	41	9	8	40	1.67
15772497--15774262	181	9.8	181	77	5	1444	41	9	8	40	1.67
15774873--15776280	181	7.9	181	76	6	1066	40	8	8	42	1.66
15776389--15777316	176	5.3	175	75	10	744	40	8	10	41	1.69
15776389--15777434	531	2.0	537	88	2	1557	39	8	10	40	1.71
15777352--15777395	19	2.2	21	84	8	56	40	15	9	34	1.79
15777730--15777762	16	2.1	16	100	0	66	36	18	6	39	1.75
15777746--15778297	181	3.1	181	78	7	549	40	8	9	40	1.69
15778247--15778332	35	2.5	35	98	0	163	43	6	10	39	1.66
15778347--15778803	176	2.6	177	78	9	444	40	8	9	42	1.67
15778776--15778834	31	1.9	31	92	0	100	40	1	6	50	1.39
15779090--15779393	162	1.9	163	81	2	371	42	9	6	41	1.63
15780008--15780229	120	1.9	120	89	1	347	33	11	10	45	1.74
15780128--15781819	180	9.4	180	78	7	1209	41	10	7	40	1.68
15780131--15781823	362	4.7	355	76	8	1371	41	10	7	40	1.68
15782195--15783479	181	7.1	178	77	8	1010	41	8	8	40	1.67
15782198--15784824	361	7.3	359	75	10	1635	41	9	8	40	1.68
15783323--15783638	159	2.0	160	91	0	517	40	9	9	39	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15783484--15784824	181	7.4	181	75	8	965	41	10	8	39	1.70
15783497--15785754	181	12.6	174	71	11	717	41	10	8	40	1.70
15784865--15789658	180	26.8	177	73	10	1832	42	9	7	40	1.67
15785059--15789642	359	12.8	362	73	10	1237	42	9	7	40	1.67
15785593--15785883	158	1.8	158	79	7	340	42	8	9	39	1.69
15786814--15786846	18	1.9	17	88	11	50	39	6	6	48	1.53
15785754--15789657	359	10.9	354	75	9	2809	42	9	7	40	1.66
15789325--15789376	16	3.0	18	75	11	54	36	7	9	46	1.66
15789525--15789797	139	2.0	138	85	2	368	42	8	6	42	1.61
15789682--15790691	181	5.7	176	73	13	523	42	9	7	40	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100