genome.fa.s168.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  95  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16359956--16360179	122	1.8	122	79	1	261	38	11	10	40	1.75
16359643--16360540	479	1.9	482	79	6	1045	41	10	8	39	1.69
16360070--16363376	716	4.6	706	76	10	3068	41	10	7	39	1.69
16360098--16363378	362	9.2	356	75	9	2573	41	10	7	39	1.69
16362076--16362108	18	1.9	17	88	11	50	39	6	6	48	1.53
16360098--16363380	181	18.4	180	74	10	2250	41	10	7	39	1.69
16363332--16363429	49	2.0	49	87	0	142	28	11	11	48	1.73
16366149--16366210	16	3.8	16	72	10	54	40	11	14	33	1.82
16371460--16372661	181	6.6	181	77	8	932	40	8	8	42	1.67
16372708--16374040	181	7.4	181	77	8	1157	42	10	8	38	1.69
16373898--16374203	154	2.0	155	82	7	372	44	9	7	38	1.66
16374052--16376105	180	11.4	180	73	8	1295	41	9	7	40	1.67
16374874--16376105	537	2.3	539	79	6	1277	41	9	7	41	1.67
16374792--16376089	181	7.2	176	73	10	479	42	9	7	40	1.66
16374148--16376116	901	2.2	894	78	7	2006	41	9	8	40	1.67
16375871--16376395	268	2.0	268	82	6	643	44	7	8	40	1.61
16376121--16377058	181	5.2	179	76	6	718	42	9	7	41	1.65
16376215--16377051	179	4.7	180	74	11	443	41	10	7	41	1.66
16377197--16377236	21	1.9	21	94	0	71	62	5	10	22	1.46
16377250--16377910	182	3.6	180	80	3	659	43	9	9	38	1.68
16378154--16378434	146	1.9	147	82	6	352	41	8	7	41	1.64
16378301--16386606	359	23.4	356	75	9	5354	41	9	8	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16379521--16386657	180	40.1	178	73	9	4188	41	9	8	40	1.67
16380288--16386178	710	8.3	710	86	5	6676	41	9	8	40	1.67
16387719--16387829	53	2.1	52	81	9	127	22	17	10	49	1.77
16389558--16390561	179	5.7	177	75	11	749	39	9	9	41	1.70
16391004--16391047	20	2.1	21	84	12	56	45	2	0	52	1.13
16391464--16391509	21	2.2	20	88	3	65	47	0	2	50	1.13
16392316--16392373	21	2.7	21	79	12	57	46	0	0	53	1.00
16392466--16392507	17	2.5	17	78	14	52	45	2	0	52	1.13
16392751--16392803	13	3.9	13	82	12	54	50	0	0	49	1.00
16392752--16392809	9	6.8	9	76	13	52	51	0	1	46	1.11
16394624--16394657	15	2.2	16	89	5	52	50	0	0	50	1.00
16394748--16394797	15	3.3	15	74	23	50	44	2	0	54	1.11
16395331--16395375	14	3.1	14	80	3	54	51	2	0	46	1.13
16396243--16396277	6	5.5	6	93	6	52	71	0	0	28	0.86
16396228--16396278	13	4.0	12	82	17	59	72	0	1	25	0.95
16396242--16396278	7	5.6	7	87	12	60	72	0	0	27	0.84
16397392--16397560	43	3.9	43	77	12	182	33	17	14	34	1.90
16397582--16397715	22	6.0	22	78	10	130	35	13	11	39	1.81
16397588--16397721	46	3.0	46	82	5	159	34	12	11	41	1.80
16398760--16398802	15	2.9	16	83	10	56	46	4	0	48	1.22
16398716--16398795	38	2.1	38	81	4	90	42	6	1	50	1.35
16399049--16399081	9	3.5	10	92	8	52	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16399257--16399295	19	2.1	18	90	4	60	35	5	5	53	1.45
16399383--16399425	15	2.9	15	80	16	54	44	0	0	55	0.99
16399458--16399575	17	6.4	18	66	17	64	49	1	1	47	1.21
16399470--16399555	10	7.5	12	69	24	53	48	1	1	48	1.16
16399594--16399631	20	1.9	20	94	0	67	44	0	7	47	1.32
16399746--16399800	23	2.4	23	77	14	60	52	1	1	43	1.22
16399953--16399986	18	1.9	17	88	5	50	41	2	8	47	1.50
16400816--16400855	21	1.9	21	90	10	64	52	0	0	47	1.00
16400845--16400888	21	2.1	21	82	0	52	45	0	2	52	1.13
16400851--16400907	21	2.6	22	81	13	64	43	0	1	54	1.10
16401236--16401270	18	2.0	18	88	5	54	48	5	5	40	1.51
16401738--16401824	35	2.5	33	80	14	88	44	0	2	52	1.13
16401741--16401824	18	4.6	17	73	19	64	45	0	2	52	1.13
16402134--16402190	15	3.7	15	73	19	55	49	0	1	49	1.11
16402134--16402190	22	2.5	22	75	13	62	49	0	1	49	1.11
16402123--16402239	18	7.0	17	69	18	59	50	2	2	44	1.29
16402619--16402676	21	2.7	21	84	7	64	53	0	1	44	1.10
16402613--16402676	27	2.3	28	81	5	85	54	0	1	43	1.09
16402617--16402701	31	2.8	31	78	8	77	54	2	3	40	1.31
16403025--16403065	20	2.0	22	85	9	59	53	2	2	41	1.27
16403141--16403231	28	3.2	28	76	14	87	43	2	1	52	1.20
16403396--16403441	19	2.5	20	82	13	62	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16403402--16403452	24	2.3	22	75	21	52	49	0	0	50	1.00
16403429--16403478	20	2.5	20	83	9	66	46	2	0	52	1.12
16408426--16408544	45	2.6	45	79	7	134	24	26	27	21	1.99
16409941--16409970	13	2.3	13	100	0	60	13	10	46	30	1.75
16422189--16422275	45	1.9	45	83	4	113	21	27	32	18	1.97
16460000--16460074	21	3.6	21	98	0	141	10	24	32	33	1.89
16465112--16465199	45	2.0	45	83	0	113	27	28	19	25	1.99
16472658--16472751	47	2.0	47	87	4	136	10	21	32	35	1.88
16475066--16475158	45	2.1	45	89	0	141	24	31	18	25	1.98
16475111--16475240	66	2.0	66	81	0	152	24	30	17	26	1.97
16486821--16486846	9	2.9	9	100	0	52	23	34	23	19	1.96
16498006--16498131	66	1.9	66	83	3	164	30	29	15	23	1.96
16509420--16509477	22	2.6	22	86	0	80	25	31	13	29	1.94
16510690--16510778	45	2.0	45	82	4	108	22	30	21	25	1.99
16525068--16525120	21	2.5	22	84	6	65	28	33	16	20	1.95
16528601--16528649	22	2.2	22	85	7	64	30	6	2	61	1.32
16528601--16528648	11	4.5	11	78	2	53	31	6	2	60	1.33
16540284--16540391	45	2.4	46	84	6	132	22	28	21	27	1.99
16540386--16540428	21	2.0	21	90	0	68	34	34	13	16	1.88
16562134--16562192	26	2.3	26	84	0	73	23	3	8	64	1.37
16572628--16572785	45	3.5	45	80	5	158	20	29	22	27	1.98
16578208--16578335	66	1.9	66	87	3	186	25	32	18	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16580726--16580822	47	2.1	47	82	3	115	21	20	22	35	1.96
16590874--16590965	47	2.0	47	82	4	114	18	22	22	35	1.95
16594220--16594319	45	2.2	46	76	15	109	23	30	23	24	1.99
16598296--16598327	10	3.2	10	100	0	64	9	43	18	28	1.81
16601808--16601900	47	2.0	47	81	12	111	21	19	23	35	1.96
16621092--16621152	26	2.2	28	85	5	81	26	4	6	62	1.40
16632221--16632313	45	2.1	45	85	0	123	24	31	19	24	1.98
16634642--16634672	7	4.4	7	100	0	62	54	0	0	45	0.99
16636472--16636528	25	2.3	24	93	3	96	57	3	1	36	1.26
16640322--16640365	22	2.0	22	100	0	88	31	13	13	40	1.84
16644248--16644292	22	2.0	22	100	0	90	31	13	15	40	1.86
16659293--16659333	3	13.7	3	100	0	82	65	0	0	34	0.93
16668552--16668595	22	2.0	22	90	0	70	43	11	11	34	1.77
16668555--16668607	22	2.4	22	81	6	54	49	7	11	32	1.67
16668572--16668708	68	2.0	68	91	0	220	44	10	12	32	1.77
16672674--16672719	22	2.1	22	87	0	65	41	13	10	34	1.79
16672688--16672731	22	2.0	22	82	8	54	52	9	9	29	1.64
16673716--16673811	47	2.0	47	93	0	165	34	12	12	40	1.81
16677913--16677957	18	2.5	17	79	10	54	35	11	15	37	1.83
16679030--16679072	4	10.8	4	80	9	52	69	0	0	30	0.88
16679030--16679080	20	2.5	21	84	6	61	66	0	0	33	0.92
16682005--16682029	7	3.6	7	100	0	50	56	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16682768--16682811	22	2.0	23	86	4	63	38	4	11	45	1.61
16696489--16696613	63	2.0	63	80	3	144	36	16	12	34	1.86
16696901--16696942	3	14.3	3	95	5	77	66	0	0	33	0.92
16696941--16696978	3	12.7	3	100	0	76	34	0	0	65	0.93
16699127--16699277	45	3.4	45	66	6	108	21	25	24	27	1.99
16714925--16715718	432	1.9	418	79	6	889	22	26	20	30	1.98
16717398--16717552	45	3.4	45	72	7	125	20	27	23	28	1.99
16725080--16725172	47	2.0	47	89	4	143	13	20	29	36	1.91
16726957--16727091	45	3.0	45	75	4	130	22	25	21	29	1.99
16733228--16733280	27	1.9	28	85	11	74	32	20	15	32	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100