genome.fa.s168.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  64  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11637098--11637176	40	2.0	40	85	5	106	44	6	12	36	1.68
11639483--11639530	22	2.2	22	81	7	53	47	2	0	50	1.12
11653049--11653078	14	2.1	15	93	6	53	26	3	0	70	1.03
11654082--11654121	20	2.0	20	90	0	62	35	0	0	65	0.93
11656568--11656635	32	2.1	32	91	0	109	27	23	10	38	1.87
11658200--11658254	26	2.1	26	82	0	65	47	12	3	36	1.59
11662519--11662564	21	2.2	21	100	0	92	47	0	8	43	1.34
11668840--11668881	2	21.5	2	90	4	68	50	2	0	47	1.14
11675100--11675162	8	8.0	8	79	6	67	22	4	0	73	1.02
11675110--11675161	20	2.6	20	87	0	86	21	5	0	73	1.04
11675100--11675162	12	5.3	12	81	5	67	22	4	0	73	1.02
11675201--11675422	120	1.8	119	80	9	261	46	8	7	37	1.62
11682778--11682884	43	2.5	42	80	11	119	30	11	15	42	1.82
11684363--11684414	4	12.8	4	85	2	68	23	5	0	71	1.07
11684369--11684414	20	2.3	20	96	0	83	23	6	0	69	1.11
11686503--11686569	21	3.1	21	89	2	89	47	0	0	52	1.00
11689391--11689793	198	2.0	199	89	2	623	33	14	17	33	1.91
11691256--11691284	3	9.7	3	100	0	58	65	0	0	34	0.93
11692385--11692435	25	2.0	25	88	7	77	29	29	9	31	1.89
11697881--11697956	30	2.5	28	79	12	80	43	1	13	42	1.52
11697889--11698002	30	3.8	30	75	13	85	46	2	11	39	1.54
11700776--11700828	22	2.3	23	90	6	81	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11700774--11700824	25	2.0	26	81	11	61	50	0	0	49	1.00
11702622--11703121	132	3.8	131	78	6	469	42	9	6	41	1.63
11705125--11705190	28	2.4	28	89	0	105	15	33	30	21	1.94
11707806--11707993	92	2.0	94	93	2	326	25	15	32	26	1.95
11708967--11709016	23	2.1	24	85	3	66	52	0	2	46	1.12
11709039--11709072	17	2.0	17	94	0	59	35	11	20	32	1.89
11710885--11710939	27	2.0	27	96	0	101	40	5	12	41	1.66
11727761--11727807	19	2.4	19	83	13	60	61	2	0	36	1.08
11729150--11729206	22	2.6	22	83	10	64	59	3	0	36	1.14
11729597--11729673	35	2.2	36	81	6	95	44	2	2	50	1.29
11729859--11729926	36	1.9	34	82	5	82	38	1	1	58	1.16
11732836--11732879	21	2.0	22	86	4	63	31	13	15	38	1.87
11734405--11734461	22	2.6	23	71	15	57	33	19	15	31	1.93
11740727--11740777	16	3.1	16	76	15	50	60	0	0	39	0.97
11745360--11745433	28	2.4	33	80	14	79	31	2	1	64	1.15
11754617--11754699	40	2.1	40	88	2	123	49	4	2	43	1.37
11755293--11755539	131	1.9	131	84	8	322	45	9	7	37	1.64
11756361--11756772	217	1.9	214	80	6	483	52	6	9	31	1.60
11757750--11757797	15	3.1	15	82	11	53	54	2	6	37	1.38
11757752--11757794	14	2.9	14	86	6	50	55	2	4	37	1.33
11759904--11759974	15	4.4	15	72	19	54	56	4	1	38	1.28
11764006--11764068	17	3.6	17	73	14	65	50	1	4	42	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11764097--11764293	7	27.6	7	66	19	50	47	2	4	45	1.35
11764240--11764286	16	3.0	15	84	9	67	42	2	2	53	1.25
11764323--11764399	35	2.2	36	81	6	95	44	2	2	50	1.29
11764411--11764458	19	2.6	18	81	15	53	39	2	0	58	1.10
11764560--11764617	19	3.1	19	72	22	59	43	0	1	55	1.10
11765633--11765661	10	2.7	11	94	5	51	17	0	0	82	0.66
11765632--11765731	42	2.4	42	74	12	100	19	5	6	70	1.28
11766979--11767100	65	1.9	63	85	6	165	56	9	12	21	1.64
11771016--11771055	17	2.2	18	86	8	55	80	0	20	0	0.72
11771592--11771716	63	2.0	63	85	6	173	38	10	24	27	1.87
11772233--11772316	43	2.0	43	81	13	102	40	16	16	26	1.90
11772324--11772362	20	2.0	20	89	0	60	38	10	20	30	1.86
11772726--11772845	46	2.6	46	80	4	134	25	13	13	47	1.79
11773167--11773270	5	19.6	5	71	24	72	20	0	4	74	1.06
11773578--11773616	19	2.1	19	90	4	62	41	15	2	41	1.61
11774292--11774448	72	2.1	75	82	8	189	60	5	10	22	1.51
11785387--11785431	2	22.5	2	100	0	90	51	0	48	0	1.00
11785675--11785729	23	2.3	25	81	9	69	40	3	1	54	1.28
11785757--11785794	20	2.1	18	85	14	51	63	0	2	34	1.09
11785877--11786237	182	2.0	178	92	3	600	37	4	11	46	1.60
11786378--11786437	28	2.2	28	90	3	95	48	3	6	41	1.46
11787690--11787726	19	1.9	19	89	10	58	59	0	2	37	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11791644--11791673	2	15.0	2	100	0	60	50	0	0	50	1.00
11793244--11793275	10	3.1	11	91	8	50	9	15	0	75	1.05
11793984--11794018	18	1.9	18	88	0	52	28	0	0	71	0.86
11800751--11800790	22	1.9	20	85	10	53	62	7	5	25	1.42
11805629--11805676	22	2.2	22	88	0	69	43	8	8	39	1.65
11806460--11807015	158	3.5	156	79	6	544	43	16	8	31	1.77
11808523--11808565	12	3.8	12	84	9	63	2	16	0	81	0.79
11810079--11810131	23	2.4	23	81	6	65	5	20	1	71	1.16
11810159--11810199	20	2.0	20	85	0	55	7	34	2	56	1.40
11811136--11811180	19	2.3	20	92	3	74	33	11	11	44	1.75
11811977--11812049	32	2.3	31	88	4	110	24	17	8	49	1.74
11812238--11812357	37	3.3	37	66	9	111	37	15	8	39	1.77
11812247--11812391	72	2.0	72	97	0	272	35	14	8	40	1.77
11814988--11815013	11	2.4	11	100	0	52	15	7	0	76	0.99
11817521--11817563	2	21.5	2	95	0	77	48	2	0	48	1.14
11819627--11819969	114	3.0	114	97	0	643	34	16	9	39	1.81
11820948--11820997	26	1.9	26	84	8	66	54	0	0	46	1.00
11821030--11821067	14	2.8	14	88	4	51	71	0	2	26	1.00
11821062--11821101	21	2.0	21	90	5	64	52	2	0	45	1.14
11824045--11824441	103	3.9	103	80	4	426	42	10	10	36	1.74
11824039--11824441	206	2.0	206	82	5	494	42	10	10	36	1.74
11824989--11825041	22	2.3	22	78	12	54	49	0	1	49	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11825206--11825240	17	2.1	17	88	0	52	17	2	0	80	0.84
11825352--11825385	18	2.0	17	88	11	52	29	0	0	70	0.87
11825359--11825410	21	2.7	18	75	18	59	34	0	0	65	0.93
11828495--11828624	65	2.0	65	89	3	199	25	17	13	43	1.85
11829838--11829878	19	2.1	20	86	4	57	14	0	63	21	1.30
11829861--11829962	50	2.0	50	90	3	161	13	0	60	24	1.39
11829911--11830010	40	2.5	40	91	1	166	15	0	60	25	1.35
11833433--11833462	6	5.0	6	91	0	51	20	0	50	30	1.49
11833808--11833929	18	6.8	18	68	15	58	34	30	4	31	1.76
11834655--11834710	21	2.8	20	81	5	76	32	0	1	66	1.03
11836559--11836637	30	2.7	29	82	5	95	18	10	16	54	1.70
11836998--11837057	31	1.9	31	93	0	102	31	13	16	38	1.87
11837260--11837474	42	5.1	42	91	2	333	21	15	36	26	1.93
11839974--11840038	18	3.6	18	71	10	51	58	3	4	33	1.34
11839986--11840038	18	2.8	18	74	5	52	60	3	3	32	1.32
11839996--11840035	17	2.3	18	82	4	55	57	5	5	32	1.42
11840128--11840170	19	2.2	20	87	4	61	25	0	2	72	0.97
11840204--11840255	22	2.5	20	82	11	61	38	3	3	53	1.37
11842130--11842189	31	1.9	31	93	0	102	33	11	15	40	1.83
11842622--11842654	16	2.0	17	88	5	50	42	0	0	57	0.98
11843363--11843419	30	1.9	30	88	0	87	22	15	36	24	1.94
11843396--11843675	114	2.5	114	81	2	330	22	13	30	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11843925--11843991	30	2.2	30	91	0	107	17	16	34	31	1.93
11844003--11844209	33	6.2	33	78	6	227	20	20	24	34	1.96
11844012--11844212	66	3.0	65	85	5	267	20	20	25	33	1.97
11845816--11845879	30	2.1	30	85	5	85	51	1	9	37	1.44
11846635--11846672	20	1.9	20	88	0	58	44	7	2	44	1.47
11846693--11846737	17	2.6	17	78	0	54	60	4	0	35	1.17
11846773--11846815	18	2.4	18	76	0	59	65	4	2	27	1.25
11846876--11846971	20	4.9	20	77	7	72	31	0	4	64	1.12
11847004--11847053	23	2.2	22	82	6	64	32	6	2	60	1.32
11850191--11850466	114	2.4	113	80	3	304	22	13	29	33	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100