genome.fa.s168.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  39  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7341305--7341373	12	6.0	12	72	23	51	59	1	0	39	1.06
7341299--7341379	15	5.1	15	73	14	54	59	1	0	39	1.05
7347012--7347117	51	2.1	50	87	6	160	55	10	4	29	1.54
7347443--7347484	23	1.9	21	100	0	66	38	11	2	47	1.53
7351890--7351920	2	15.5	2	93	0	53	51	3	0	45	1.17
7360726--7360775	24	2.1	24	85	3	66	16	6	8	70	1.32
7361051--7361090	19	2.1	19	86	9	55	55	5	2	37	1.35
7361108--7361156	24	2.0	24	88	0	71	46	0	2	51	1.12
7361181--7361215	18	1.9	18	88	0	52	37	2	0	60	1.12
7369976--7370003	6	4.7	6	100	0	56	0	32	0	67	0.91
7371904--7371953	20	2.5	19	78	9	55	68	0	28	4	1.08
7376250--7376315	33	2.0	34	93	3	116	42	6	0	51	1.26
7381650--7381717	34	2.0	35	97	2	129	45	5	0	48	1.26
7381634--7381724	34	2.6	34	85	13	107	45	7	1	46	1.39
7386376--7386522	52	2.8	52	83	8	201	26	23	8	41	1.82
7387310--7387448	52	2.7	52	86	6	201	25	21	7	45	1.79
7387480--7387510	11	2.8	11	100	0	62	51	29	0	19	1.47
7391360--7391432	35	2.1	35	86	0	101	42	9	1	46	1.45
7399298--7399392	48	2.0	48	85	0	127	35	9	15	38	1.80
7408050--7408121	34	2.1	36	84	5	94	23	6	4	65	1.35
7408215--7408281	24	2.8	24	80	12	77	70	2	7	19	1.25
7408201--7408283	13	5.4	14	74	22	62	72	2	6	19	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7408202--7408290	25	3.5	24	75	15	74	71	2	7	17	1.20
7409093--7409246	3	53.0	3	71	22	98	56	5	3	35	1.38
7409093--7409246	41	4.0	38	76	21	135	56	5	3	35	1.38
7410185--7410312	68	1.9	68	85	3	177	38	10	16	34	1.84
7411306--7411393	11	7.7	11	71	7	68	3	12	4	79	1.01
7415218--7415294	38	2.1	38	90	2	120	19	7	6	66	1.40
7415368--7415431	17	3.6	17	74	14	58	70	4	7	17	1.29
7416290--7416316	14	1.9	14	100	0	54	29	29	0	40	1.57
7416367--7416529	3	56.3	3	70	22	64	55	7	3	33	1.45
7416364--7416529	29	5.8	29	68	20	91	55	7	4	33	1.47
7416433--7416509	34	2.3	33	76	14	84	58	9	2	29	1.42
7416475--7416529	11	4.6	12	76	19	53	56	3	1	38	1.28
7421438--7421505	34	2.0	35	91	2	111	42	5	1	50	1.35
7429542--7429614	35	2.1	35	86	0	101	42	9	1	46	1.45
7437486--7437580	48	2.0	48	87	0	136	38	8	13	38	1.75
7446227--7446299	35	2.1	36	84	2	94	23	6	4	65	1.34
7446227--7446305	36	2.2	36	84	4	97	21	6	5	67	1.33
7446393--7446459	24	2.8	24	80	12	77	70	2	7	19	1.25
7446379--7446461	13	5.4	14	74	22	62	72	2	6	19	1.17
7446380--7446473	25	3.8	24	75	14	75	72	2	8	17	1.19
7447256--7447406	3	51.0	3	70	23	81	55	5	3	35	1.39
7447278--7447387	42	2.7	37	82	16	121	55	5	3	35	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7447256--7447406	34	4.8	32	74	18	113	55	5	3	35	1.39
7447256--7447400	13	10.6	14	70	20	58	55	5	3	35	1.40
7448374--7448482	34	3.2	34	70	10	105	37	11	16	33	1.85
7453396--7453474	39	2.0	39	90	4	124	18	7	6	67	1.38
7453548--7453612	18	3.6	18	72	6	60	70	4	7	16	1.28
7454009--7454051	20	2.2	20	86	0	59	53	16	4	25	1.62
7454543--7454702	3	55.3	3	69	22	58	55	7	3	33	1.46
7454540--7454617	29	2.7	29	77	15	81	53	5	6	34	1.48
7454648--7454702	11	4.6	12	76	19	53	56	3	1	38	1.28
7456206--7456254	18	2.8	17	81	6	62	38	16	16	28	1.90
7456065--7456370	86	3.6	85	80	4	310	37	13	16	33	1.87
7456761--7456787	14	1.9	14	100	0	54	48	0	14	37	1.45
7462249--7462380	51	2.6	52	86	1	167	43	15	4	37	1.67
7462581--7462613	13	2.5	13	90	9	50	15	3	0	81	0.80
7464505--7464688	92	2.0	93	84	1	244	44	9	7	39	1.65
7464787--7464821	2	17.5	2	100	0	70	48	0	0	51	1.00
7469314--7469338	7	3.6	7	100	0	50	12	0	0	88	0.53
7469539--7469575	14	2.5	15	83	16	51	40	2	5	51	1.39
7477829--7477930	50	2.0	50	96	0	186	36	20	11	31	1.89
7483682--7483739	27	2.2	26	81	9	64	60	1	5	32	1.29
7486195--7486245	24	2.2	24	85	3	68	25	9	45	19	1.81
7489316--7489391	38	2.0	40	89	5	120	36	13	6	43	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7493449--7493573	63	2.0	63	90	3	198	36	27	14	21	1.92
7499503--7499569	34	1.9	35	87	6	100	56	0	2	40	1.14
7500196--7500248	2	26.5	2	100	0	106	0	49	0	50	1.00
7501589--7501613	13	1.9	13	100	0	50	76	0	0	24	0.80
7501690--7501747	22	2.8	20	84	5	71	55	0	0	44	0.99
7501689--7501737	12	4.2	12	76	12	57	59	0	0	40	0.98
7502380--7502560	10	18.6	10	67	14	67	61	6	1	30	1.29
7502377--7502564	9	19.4	10	66	16	76	59	6	1	33	1.30
7502379--7502549	28	6.0	27	76	15	116	61	7	0	30	1.27
7503510--7503569	9	6.4	9	73	9	50	31	3	1	63	1.20
7503717--7503910	10	19.6	9	68	19	77	38	1	5	55	1.32
7503740--7503875	30	4.5	30	74	13	98	40	1	2	55	1.24
7503761--7503905	41	3.5	40	74	12	125	37	2	3	56	1.28
7503769--7503910	20	7.2	18	74	17	88	37	2	4	56	1.31
7504778--7504820	22	2.0	21	90	4	68	13	6	0	79	0.93
7504907--7504941	9	3.8	9	88	3	52	0	17	2	80	0.84
7505321--7505353	16	2.1	16	94	0	57	9	12	3	75	1.14
7506452--7506653	95	2.1	95	89	4	309	40	7	8	42	1.65
7506584--7506721	63	2.2	64	89	3	208	34	7	10	46	1.68
7508048--7508099	27	1.9	26	85	14	70	9	9	3	76	1.12
7509424--7509455	17	1.9	16	93	6	55	40	0	0	59	0.97
7509770--7509812	18	2.3	18	80	8	50	60	0	6	32	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7510396--7510448	15	3.5	15	84	5	70	9	3	5	81	0.98
7511138--7511188	22	2.3	22	79	0	57	13	9	1	74	1.15
7515529--7515562	15	2.1	17	89	10	54	35	17	2	44	1.64
7516406--7516455	14	3.5	14	72	5	55	56	2	6	36	1.36
7519698--7519731	17	1.9	17	88	5	50	17	11	5	64	1.45
7523837--7523867	2	15.5	2	93	0	53	48	0	3	48	1.17
7527639--7527663	2	12.5	2	100	0	50	48	0	52	0	1.00
7528459--7528493	3	11.7	3	100	0	70	68	0	0	31	0.90
7537182--7537211	2	15.0	2	92	0	51	46	0	0	53	1.00
7551132--7551179	20	2.4	20	86	6	62	39	12	2	45	1.54
7557935--7557988	17	3.2	17	85	15	60	29	0	3	66	1.09
7558140--7558292	79	1.9	79	81	2	182	40	15	22	20	1.91
7558420--7558446	13	2.1	13	100	0	54	51	0	7	40	1.30
7575322--7575362	22	1.9	21	90	5	64	36	2	0	60	1.10
7576085--7576122	17	2.2	17	86	9	51	78	0	10	10	0.95
7583512--7583547	17	2.1	17	89	0	54	36	2	0	61	1.11
7583496--7583540	20	2.2	20	80	7	56	35	4	0	60	1.17
7583522--7583551	9	3.4	9	90	9	53	43	0	0	56	0.99
7584069--7584113	18	2.5	18	81	0	54	44	0	8	46	1.34
7584128--7584165	17	2.2	17	90	0	58	36	2	2	57	1.26
7584834--7584947	17	6.7	17	81	9	126	32	18	22	26	1.97
7584845--7584943	34	2.8	35	93	3	164	33	18	22	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7592320--7592367	19	2.6	17	75	12	51	41	4	0	54	1.20
7602370--7602416	23	2.1	21	84	7	58	38	2	4	55	1.31
7604174--7604207	15	2.3	15	89	0	50	11	0	11	76	1.02
7605278--7605347	21	3.3	20	81	16	70	8	4	8	78	1.08
7605569--7605691	49	2.5	50	81	5	151	34	18	17	29	1.94
7605678--7605705	14	2.0	14	100	0	56	35	21	7	35	1.81
7605628--7605754	63	2.0	63	80	6	141	37	19	13	29	1.90
7605699--7606292	49	12.4	48	82	6	600	38	21	12	27	1.90
7605699--7606292	144	4.1	142	83	7	700	38	21	12	27	1.90
7605741--7606292	241	2.3	237	82	8	679	38	21	12	27	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100