genome.fa.s168.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  3  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
224687--224719	15	2.2	15	94	0	57	18	18	48	15	1.81
228514--229286	387	2.0	387	93	0	1314	23	19	19	37	1.94
237565--237678	16	7.2	15	70	18	54	63	7	0	28	1.27
237904--238170	43	6.2	43	79	4	254	24	14	16	45	1.84
237904--238147	128	1.9	130	80	5	289	24	14	15	45	1.84
239159--239200	9	4.7	9	85	8	59	26	0	2	71	0.98
239450--239483	13	2.5	13	90	4	50	64	0	5	29	1.17
242730--242773	8	5.8	8	78	10	56	38	0	0	61	0.96
254399--254430	15	2.1	15	100	0	64	40	12	28	18	1.87
254969--255007	20	2.1	19	86	13	55	28	2	2	66	1.18
262673--262713	2	21.0	2	95	5	75	51	0	0	48	1.00
264582--264607	2	13.0	2	100	0	52	50	0	0	50	1.00
270837--270867	2	15.5	2	100	0	62	51	0	0	48	1.00
278473--278501	15	2.0	15	93	6	51	68	0	31	0	0.89
282016--282065	25	2.0	25	100	0	100	36	12	20	32	1.89
287354--287385	12	2.4	14	90	10	50	40	0	0	59	0.97
294611--294639	14	2.0	15	93	6	51	65	0	0	34	0.93
296356--296391	16	2.2	16	90	0	54	44	19	2	33	1.65
302213--302246	7	4.9	7	88	0	50	23	17	44	14	1.86
302475--302511	17	2.3	15	90	9	56	86	13	0	0	0.57
303726--303753	2	14.0	2	100	0	56	50	0	0	50	1.00
305995--306046	23	2.3	23	81	12	63	46	1	0	51	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
310103--310165	2	31.5	2	83	0	72	47	3	4	44	1.40
314489--314522	2	17.0	2	87	0	50	47	2	0	50	1.16
315681--315727	2	23.5	2	95	0	85	51	2	0	46	1.13
325561--325590	2	15.0	2	100	0	60	50	0	0	50	1.00
336080--336107	2	14.0	2	100	0	56	0	50	0	50	1.00
351363--351391	3	9.7	3	100	0	58	0	34	0	65	0.93
351543--351569	2	13.5	2	100	0	54	48	0	0	51	1.00
353510--353546	16	2.2	17	86	13	51	72	0	0	27	0.84
353590--353657	30	2.3	28	85	14	93	48	13	5	32	1.66
357909--358007	41	2.4	41	81	10	103	50	10	2	37	1.48
360223--360257	7	5.0	7	85	0	52	51	0	17	31	1.45
362113--362154	22	1.9	22	95	0	75	33	9	9	47	1.68
366944--366968	6	4.2	6	100	0	50	84	0	0	16	0.63
372614--372643	12	2.4	13	94	5	53	36	3	6	53	1.44
378753--378933	95	1.9	95	93	0	308	35	25	16	22	1.94
384324--384359	2	18.0	2	100	0	72	50	0	0	50	1.00
387496--387551	25	2.3	25	87	3	78	32	5	1	60	1.29
391317--391350	2	17.0	2	93	0	59	47	0	2	50	1.16
396174--396254	40	2.0	40	97	0	153	35	24	8	30	1.86
398532--398560	15	1.9	15	100	0	58	41	6	3	48	1.47
401591--401645	26	2.1	26	96	0	101	52	12	23	10	1.71
402357--402398	21	2.0	20	86	4	57	38	2	47	11	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
420578--420630	3	17.7	3	96	0	97	66	1	0	32	1.03
428100--428138	17	2.1	20	86	13	57	46	0	0	53	1.00
428778--428807	10	3.1	10	95	4	53	36	0	0	63	0.95
430055--430096	18	2.3	18	80	8	50	66	0	0	33	0.92
430359--430715	150	2.3	149	78	8	328	44	6	5	43	1.51
431085--431124	17	2.4	17	95	0	71	52	10	5	32	1.56
431101--431148	23	2.0	24	84	11	64	58	4	2	35	1.29
432146--432253	44	2.5	44	84	0	144	41	6	11	40	1.66
432102--432262	66	2.5	65	78	8	159	44	6	12	36	1.69
432146--432262	22	5.4	22	75	7	114	42	5	11	40	1.65
432183--432286	22	4.8	22	75	7	77	43	4	11	40	1.62
432285--432362	22	3.6	21	78	11	68	44	7	5	42	1.55
432326--432393	32	2.1	32	97	0	127	48	1	5	44	1.36
432258--432434	76	2.4	76	81	7	200	46	5	6	42	1.51
432360--432456	44	2.2	44	87	3	133	48	5	5	41	1.47
432374--432498	66	1.9	66	85	6	173	48	6	5	40	1.52
432326--432434	11	10.1	10	72	12	74	48	2	5	43	1.40
432374--432478	22	4.8	22	83	6	115	46	7	4	40	1.53
432336--432498	22	7.5	22	74	9	102	47	4	6	41	1.50
432756--432830	22	3.4	22	77	3	78	48	6	9	36	1.62
432993--433137	22	6.6	22	75	9	73	46	9	5	38	1.60
433014--433149	66	2.1	66	81	5	159	49	8	4	37	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
433014--433149	22	6.2	22	79	5	123	49	8	4	37	1.54
433173--433232	22	2.7	23	72	23	56	41	1	10	46	1.47
440403--440436	2	17.0	2	100	0	68	50	0	0	50	1.00
440621--440672	22	2.5	22	93	6	90	50	0	0	50	1.00
440779--440813	2	17.5	2	100	0	70	48	0	0	51	1.00
441276--441319	21	2.1	21	100	0	88	9	29	13	47	1.74
443687--443716	15	1.9	16	93	6	53	60	6	13	20	1.55
447252--447298	23	2.0	23	95	0	85	34	29	10	25	1.90
450682--450745	28	2.3	28	83	2	76	46	26	0	26	1.53
458018--458079	30	2.1	30	100	0	124	40	33	6	19	1.77
460781--460837	21	2.6	21	81	10	53	64	1	3	29	1.20
460982--461060	28	2.7	29	79	18	85	55	3	6	34	1.43
461502--461545	16	2.7	16	83	13	54	9	6	2	81	0.94
471387--471416	2	15.0	2	100	0	60	50	0	50	0	1.00
477284--477355	18	4.0	18	71	10	58	63	0	1	34	1.03
482751--482867	15	8.1	15	76	18	115	54	1	0	43	1.10
482754--482859	26	4.4	25	76	13	105	54	1	0	43	1.11
482759--482855	48	2.0	49	84	10	126	53	2	0	44	1.12
482754--482877	42	2.9	42	76	13	137	56	1	0	41	1.14
482956--483003	9	5.6	9	76	18	57	45	0	0	54	0.99
485130--485304	90	2.0	84	86	6	242	21	17	14	46	1.83
491515--491555	2	20.5	2	94	0	73	48	2	0	48	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
491814--491844	14	2.1	14	94	5	53	58	0	41	0	0.98
493254--493303	25	2.0	26	92	4	84	34	8	28	30	1.86
493470--493508	20	2.0	20	94	0	69	48	5	7	38	1.54
497478--497512	2	17.5	2	100	0	70	48	0	0	51	1.00
500249--500281	15	2.2	15	94	0	57	36	18	6	39	1.75
501899--501923	1	25.0	1	100	0	50	0	0	0	100	0.00
513750--513791	6	7.2	6	97	2	77	30	52	0	16	1.44
524535--524574	18	2.2	19	86	4	55	50	0	0	50	1.00
524531--524580	19	2.7	18	78	6	55	54	0	0	46	1.00
528480--528543	25	2.6	25	76	14	60	40	6	1	51	1.36
528793--528865	30	2.3	32	79	11	80	46	8	4	41	1.53
532615--532648	17	1.9	18	88	5	52	20	2	17	58	1.51
532954--532994	14	2.8	15	75	20	50	34	0	0	65	0.93
534227--534290	25	2.6	25	73	12	60	45	0	7	46	1.32
538551--538668	36	3.3	35	92	2	182	33	11	17	37	1.85
540878--540906	14	2.0	15	93	6	51	20	24	13	41	1.89
541328--541369	21	2.0	21	100	0	84	38	9	4	47	1.57
546043--546101	24	2.5	24	82	0	73	61	3	6	28	1.38
546042--546096	13	4.4	13	79	9	60	63	1	5	29	1.27
550521--550557	16	2.3	16	100	0	74	32	8	32	27	1.86
553512--553547	12	3.0	12	91	0	54	38	0	38	22	1.54
553512--553549	15	2.5	15	91	0	58	39	0	39	21	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
574806--575322	116	4.6	115	88	5	745	44	27	7	20	1.79
574806--575322	225	2.3	226	90	1	797	44	27	7	20	1.79
576291--576329	11	3.5	11	82	0	51	46	0	0	53	1.00
577010--577043	17	2.1	16	88	5	50	50	11	5	32	1.63
578085--578129	23	2.0	23	82	8	56	35	0	8	55	1.31
582076--582116	12	3.2	13	83	10	50	51	0	0	48	1.00
589075--589114	2	20.0	2	94	0	71	52	0	0	47	1.00
595048--595145	48	2.0	48	100	0	196	37	32	9	20	1.84
595252--595334	43	1.9	43	85	9	116	26	25	8	39	1.84
595370--595412	11	3.9	11	87	0	68	55	27	0	16	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100