genome.fa.s168.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  76  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13701491--13701566	19	3.6	21	77	20	70	17	2	3	76	1.06
13701556--13701597	20	2.1	20	86	8	59	26	2	2	69	1.13
13701868--13701892	12	2.1	12	100	0	50	36	8	0	56	1.29
13706359--13706400	10	4.2	10	90	0	57	83	4	11	0	0.79
13707130--13707316	60	3.1	60	75	6	146	22	26	14	35	1.94
13707775--13707842	17	3.9	17	83	11	66	32	14	16	36	1.89
13707771--13707842	18	4.1	17	82	10	83	30	13	16	38	1.88
13707759--13707926	86	2.0	86	84	2	221	30	17	13	38	1.88
13708338--13708502	88	1.9	88	91	5	271	49	15	10	25	1.76
13708947--13708987	12	3.4	13	87	9	52	80	4	0	14	0.87
13709821--13709869	21	2.3	21	82	6	55	32	6	10	51	1.61
13713045--13713114	29	2.5	27	82	13	88	38	0	0	61	0.96
13713057--13713121	13	4.7	14	76	14	64	40	0	0	60	0.97
13713037--13713126	32	3.0	32	78	12	102	40	0	0	60	0.97
13713837--13713890	23	2.5	22	80	11	67	50	1	1	46	1.23
13713889--13713926	14	2.8	14	88	4	51	63	5	0	31	1.17
13715355--13715397	18	2.3	19	84	11	54	41	0	0	58	0.98
13717623--13717648	13	2.0	13	100	0	52	46	23	23	7	1.78
13718167--13718226	31	1.9	30	83	6	75	38	0	5	56	1.21
13720858--13720908	23	2.2	23	79	6	59	21	27	7	43	1.80
13726299--13726361	29	2.2	29	94	2	110	31	25	3	39	1.71
13726850--13726930	35	2.3	34	75	10	83	27	16	4	51	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13727375--13727452	41	1.9	41	92	5	131	34	5	21	38	1.76
13729366--13729410	22	2.0	23	91	4	74	51	4	4	40	1.42
13738578--13738604	13	2.1	13	100	0	54	37	22	18	22	1.95
13739490--13739534	10	4.5	10	81	10	56	51	17	4	26	1.65
13749372--13749434	25	2.5	25	94	0	108	33	12	15	38	1.86
13753438--13753478	12	3.4	13	87	9	52	80	4	0	14	0.87
13754312--13754360	21	2.3	21	82	6	55	32	4	12	51	1.58
13754974--13755010	18	2.2	18	85	9	51	40	0	5	54	1.24
13757530--13757599	29	2.5	27	82	13	88	38	0	0	61	0.96
13757542--13757606	13	4.7	14	76	14	64	40	0	0	60	0.97
13757522--13757611	32	3.0	32	78	12	102	40	0	0	60	0.97
13758320--13758373	23	2.5	22	80	11	67	50	1	1	46	1.23
13758372--13758409	14	2.8	14	88	4	51	63	5	0	31	1.17
13759827--13759873	19	2.5	19	86	10	62	44	2	0	53	1.12
13762081--13762106	13	2.0	13	100	0	52	46	23	23	7	1.78
13762623--13762682	31	1.9	30	83	6	75	38	0	5	56	1.21
13763754--13763778	10	2.5	10	100	0	50	92	8	0	0	0.40
13765318--13765368	23	2.2	23	79	6	59	21	27	7	43	1.80
13766736--13767167	230	1.9	230	85	2	609	39	15	15	30	1.88
13770773--13770834	28	2.2	28	97	0	115	32	24	3	40	1.71
13771197--13771320	50	2.5	51	83	6	139	23	15	5	55	1.61
13771847--13771922	40	1.9	40	97	0	143	35	3	21	39	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13771917--13772005	46	1.9	46	81	0	106	47	14	5	32	1.68
13780117--13780382	133	2.0	134	96	0	498	39	10	14	35	1.81
13783164--13783188	4	6.2	4	100	0	50	76	0	0	24	0.80
13785171--13785241	21	3.4	20	72	14	63	53	1	2	42	1.24
13785159--13785241	42	2.0	43	92	2	141	51	3	2	42	1.32
13785385--13785450	20	3.3	20	97	0	123	31	9	39	19	1.83
13794025--13794063	17	2.3	17	86	0	51	10	0	12	76	1.01
13794296--13794453	52	3.0	52	86	1	208	41	8	22	27	1.82
13795020--13795078	24	2.4	25	80	5	66	42	11	30	15	1.83
13795035--13795082	24	2.0	25	91	4	80	43	10	27	18	1.82
13795333--13795357	11	2.3	11	100	0	50	32	0	28	40	1.57
13795378--13795517	51	2.7	52	83	2	183	47	5	18	27	1.71
13796089--13796167	25	3.2	25	71	7	72	43	7	31	17	1.77
13796104--13796177	25	3.0	25	78	4	87	39	8	32	20	1.82
13796424--13796459	11	3.3	11	88	11	56	27	0	27	44	1.55
13796481--13796587	51	2.1	52	87	1	153	47	5	16	29	1.70
13796487--13796634	51	2.9	51	76	6	145	47	4	18	29	1.69
13797166--13797282	25	4.7	25	73	10	105	40	5	31	23	1.76
13797166--13797282	49	2.4	50	79	4	130	40	5	31	23	1.76
13797569--13797723	52	3.0	52	84	1	195	43	7	20	29	1.78
13798290--13798365	24	3.1	25	75	7	75	40	9	28	21	1.84
13798675--13798823	52	2.9	52	88	4	194	44	4	21	29	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13799357--13799434	25	3.2	25	80	8	97	37	8	32	21	1.85
13799728--13799761	11	3.1	11	86	0	50	23	0	29	47	1.52
13799782--13799937	52	3.0	52	81	5	190	44	7	19	28	1.78
13800365--13800398	12	2.8	12	95	0	59	20	0	11	67	1.21
13800526--13800595	24	2.8	25	80	4	70	34	8	37	20	1.83
13800482--13800593	49	2.3	50	78	4	120	38	7	33	21	1.81
13800482--13800593	25	4.5	25	77	4	102	38	7	33	21	1.81
13800897--13801005	52	2.1	52	87	3	157	45	7	19	27	1.76
13801627--13801696	24	2.8	25	80	4	70	34	8	37	20	1.83
13811532--13811583	18	2.7	20	80	16	65	19	0	1	78	0.84
13811666--13811753	30	3.0	28	76	15	88	37	14	2	45	1.58
13815861--13815916	25	2.2	25	87	0	76	28	16	37	17	1.91
13820014--13820058	20	2.2	20	84	11	56	48	0	17	33	1.48
13823741--13823775	16	2.2	16	89	0	52	28	14	11	45	1.79
13826507--13826537	13	2.4	13	100	0	62	54	16	6	22	1.64
13836336--13836495	59	2.7	58	82	5	180	21	3	18	56	1.56
13836824--13836912	37	2.4	38	82	1	108	37	3	6	52	1.44
13840913--13841006	29	3.1	31	81	10	104	45	3	6	44	1.45
13841661--13842053	58	6.7	59	86	6	482	35	13	7	43	1.72
13841778--13841866	27	3.2	27	65	20	65	37	15	4	42	1.68
13841949--13842041	29	3.2	30	61	27	72	37	16	7	38	1.77
13842068--13842096	5	6.0	5	92	8	51	79	0	0	20	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13842068--13842096	14	2.0	15	93	6	51	79	0	0	20	0.74
13842971--13843100	20	6.2	20	81	6	134	64	1	6	27	1.26
13843047--13843134	41	2.1	41	87	10	126	60	1	5	32	1.28
13843041--13843130	14	6.7	13	76	20	80	61	1	4	33	1.23
13843492--13843587	35	2.7	35	83	12	117	57	2	6	34	1.36
13843824--13844159	42	7.9	41	81	10	331	39	21	14	23	1.91
13843829--13844159	127	2.6	126	87	4	425	38	22	15	23	1.92
13843829--13844159	170	1.9	170	83	8	431	38	22	15	23	1.92
13844676--13845022	59	5.9	59	86	4	470	35	13	7	42	1.74
13845024--13845070	13	3.7	13	76	23	55	80	0	0	19	0.70
13845023--13845067	6	7.5	6	88	11	58	82	0	0	17	0.68
13845022--13845128	14	7.5	14	70	18	53	71	3	0	24	1.01
13845092--13845129	18	2.1	18	90	0	58	78	0	0	21	0.74
13845928--13845990	19	3.3	18	74	10	54	71	4	1	22	1.13
13845943--13846010	20	3.5	20	74	10	59	69	2	2	25	1.17
13845928--13846014	38	2.2	38	82	11	97	68	4	2	24	1.19
13845971--13846132	20	7.8	20	79	10	139	62	1	4	30	1.26
13846003--13846185	3	54.7	3	72	21	118	62	1	3	31	1.22
13846003--13846189	14	13.9	13	73	19	122	63	1	3	31	1.22
13846027--13846254	22	10.9	22	70	18	100	67	2	2	27	1.15
13846163--13846256	8	13.1	7	79	15	72	79	2	0	18	0.82
13846184--13846256	18	3.8	19	81	15	80	82	2	0	15	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13846161--13846256	32	3.0	31	78	14	97	79	2	0	18	0.84
13847390--13847444	21	2.7	21	91	2	85	41	21	9	27	1.83
13848211--13848241	15	2.1	15	93	0	53	58	6	3	32	1.40
13849230--13849276	24	2.0	22	88	8	67	19	2	4	74	1.09
13849283--13849352	31	2.2	32	82	12	83	24	2	4	68	1.21
13853450--13853488	13	3.3	13	73	26	50	76	5	5	12	1.11
13853455--13853493	11	3.5	11	80	13	53	74	5	2	17	1.12
13853445--13853502	22	2.7	22	91	2	91	77	3	6	12	1.09
13855086--13855175	46	2.0	46	84	8	121	31	7	17	43	1.78
13855677--13855760	28	3.0	28	74	16	84	20	3	2	73	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100