genome.fa.s168.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  36  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6877098--6877138	18	2.3	18	80	16	50	46	12	2	39	1.54
6877098--6877139	17	2.4	17	84	11	50	45	11	2	40	1.54
6880319--6880424	53	2.0	53	88	1	160	49	7	16	26	1.73
6882024--6882130	35	3.0	35	72	14	103	28	1	5	63	1.27
6882120--6882153	17	1.9	18	88	5	52	14	2	2	79	0.97
6882127--6882264	65	2.2	63	77	12	140	21	6	3	68	1.27
6882519--6882572	25	2.2	25	86	6	74	40	1	16	40	1.59
6882704--6882747	20	2.2	20	88	4	63	22	31	18	27	1.97
6883104--6883188	6	13.7	6	68	19	50	15	7	1	76	1.06
6883140--6883188	16	3.1	15	80	8	53	16	6	0	77	0.96
6883214--6883491	118	2.4	116	90	4	443	44	7	13	34	1.72
6883214--6883491	57	4.7	59	85	7	370	44	7	13	34	1.72
6891854--6891983	8	16.8	8	88	9	198	73	0	13	13	1.11
6891854--6891983	15	8.4	16	88	9	198	73	0	13	13	1.11
6891855--6891983	23	5.6	23	91	7	192	72	0	13	13	1.11
6891854--6891983	31	4.2	31	92	6	203	73	0	13	13	1.11
6893020--6893371	41	8.5	41	91	5	548	22	19	23	35	1.96
6893379--6893460	23	3.6	22	87	6	110	89	10	0	0	0.50
6893379--6893450	15	4.9	15	93	5	121	90	9	0	0	0.46
6893380--6893449	7	9.9	7	90	7	106	90	10	0	0	0.47
6893378--6893452	1	75.0	1	81	0	87	90	9	0	0	0.45
6893597--6893634	20	2.0	20	89	5	60	26	31	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6894007--6894091	6	13.7	6	68	19	50	15	7	1	76	1.06
6894043--6894091	16	3.1	15	80	8	53	16	6	0	77	0.96
6894107--6894335	60	3.9	60	86	7	335	44	7	13	34	1.72
6894119--6894335	116	1.9	117	91	4	359	44	7	13	34	1.72
6895694--6895742	16	3.1	16	77	16	57	57	4	2	36	1.30
6895949--6895973	2	12.5	2	100	0	50	48	0	0	52	1.00
6908213--6908252	16	2.4	17	91	4	64	57	5	0	37	1.21
6909506--6909560	29	1.9	28	88	3	83	41	1	3	52	1.29
6913533--6913564	3	10.7	3	100	0	64	31	0	0	68	0.90
6915581--6915613	16	2.1	16	94	0	57	42	15	0	42	1.46
6919552--6919583	3	10.7	3	100	0	64	31	0	0	68	0.90
6921595--6921627	16	2.1	16	94	0	57	42	15	0	42	1.46
6927352--6927410	9	5.9	10	78	21	54	32	0	6	61	1.22
6927413--6927497	35	2.4	35	67	15	50	27	2	5	64	1.28
6927357--6927461	16	6.6	16	69	18	60	28	0	6	64	1.18
6927484--6927521	9	4.5	8	90	9	58	13	2	0	84	0.73
6927487--6927520	17	1.9	18	94	5	61	14	2	0	82	0.79
6927488--6927529	18	2.3	18	84	12	59	16	7	0	76	1.00
6928070--6928115	20	2.3	20	92	3	76	26	21	21	30	1.99
6928428--6928499	25	2.8	25	78	13	67	9	5	4	80	1.00
6928588--6928676	27	3.2	27	62	20	65	41	5	14	38	1.70
6928580--6928782	57	3.5	57	91	4	318	45	6	13	33	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6928642--6928929	147	2.0	145	88	6	431	43	6	15	34	1.73
6928787--6928942	59	2.6	59	84	10	212	40	6	16	37	1.74
6934055--6934543	42	11.8	42	86	7	673	22	17	21	38	1.93
6934059--6934543	82	5.9	83	88	6	654	23	17	21	37	1.94
6934551--6934613	22	3.0	21	90	6	101	93	6	0	0	0.34
6934550--6934605	1	56.0	1	92	0	94	96	3	0	0	0.22
6934806--6934910	16	6.6	16	69	18	60	27	0	7	64	1.20
6934937--6934970	17	1.9	18	88	5	52	14	2	2	79	0.97
6934891--6935011	58	2.1	56	80	13	131	27	3	3	66	1.23
6935372--6935436	31	2.1	32	83	13	82	29	16	21	32	1.96
6935870--6935916	12	4.1	11	82	12	51	12	2	4	80	0.94
6935985--6936334	119	2.9	118	89	6	505	44	8	13	34	1.73
6935995--6936332	60	5.7	58	85	7	457	44	7	13	34	1.72
6938711--6938740	12	2.5	12	94	0	51	70	3	0	26	1.03
6939446--6939505	30	2.0	30	90	0	93	36	23	15	25	1.93
6940103--6940285	73	2.5	73	83	5	237	44	6	13	35	1.70
6940948--6941007	28	2.1	28	82	11	70	36	1	25	36	1.66
6942847--6943096	133	1.9	131	88	3	376	35	14	10	40	1.80
6943743--6943802	12	4.8	13	76	15	56	65	0	0	35	0.93
6943746--6943784	16	2.4	16	82	0	51	64	0	0	35	0.94
6943742--6943803	22	2.8	22	73	7	63	64	0	0	35	0.94
6944072--6944119	21	2.3	21	89	7	71	37	10	10	41	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6944340--6944382	20	2.2	20	91	0	68	48	9	4	37	1.56
6944604--6944652	21	2.3	22	82	7	64	51	12	4	32	1.58
6945156--6945549	158	2.5	158	87	0	556	42	22	4	30	1.73
6953251--6953287	19	1.9	19	89	10	58	48	0	40	10	1.38
6954082--6954114	14	2.3	15	89	5	50	57	3	0	39	1.14
6962017--6962042	2	13.0	2	100	0	52	50	0	0	50	1.00
6964354--6964391	15	2.5	15	95	0	67	39	0	2	57	1.12
6964400--6964432	10	3.3	10	95	0	57	24	24	0	51	1.48
6965434--6965474	20	2.0	22	85	9	59	9	7	0	82	0.83
6966369--6966428	24	2.5	24	94	0	102	51	0	0	48	1.00
6968660--6968771	52	2.1	54	86	6	158	60	4	7	27	1.42
6969545--6969578	13	2.4	14	85	14	52	23	0	11	64	1.26
6974395--6974434	17	2.3	18	87	12	57	27	2	0	70	1.01
6986068--6986108	15	2.6	16	84	7	57	34	7	2	56	1.40
6988851--6988881	11	2.8	11	100	0	62	19	0	29	51	1.47
6988906--6989062	52	3.0	51	84	3	188	43	7	22	26	1.78
6993002--6993045	21	2.1	21	100	0	88	52	4	27	15	1.63
6997956--6997990	18	1.9	18	88	11	54	11	11	2	74	1.18
6997956--6997989	17	1.9	18	88	5	52	11	11	2	73	1.20
7000366--7000423	29	2.0	29	83	9	75	50	1	1	46	1.22
7004819--7004911	45	2.0	46	83	2	116	37	13	16	32	1.88
7005233--7005291	21	2.7	22	85	10	77	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7005233--7005298	22	3.1	21	77	16	73	48	0	0	51	1.00
7005641--7005740	50	1.9	51	86	6	139	51	3	1	45	1.23
7006116--7006154	12	3.4	11	92	7	60	87	2	7	2	0.73
7006179--7006243	30	2.1	31	86	8	89	76	7	6	9	1.14
7006179--7006259	30	2.7	30	80	5	83	77	6	4	11	1.10
7011124--7011154	16	1.9	16	93	0	53	16	0	16	67	1.23
7020935--7020995	31	2.0	31	86	0	86	36	16	22	24	1.94
7023358--7023414	29	2.0	29	89	6	89	45	5	12	36	1.64
7024458--7024588	67	2.0	67	90	0	208	34	13	19	32	1.91
7026251--7026283	14	2.3	15	89	5	50	18	0	9	72	1.10
7026621--7026666	18	2.6	18	80	13	51	23	6	0	69	1.11
7026676--7026708	3	11.0	3	100	0	66	66	0	0	33	0.92
7037933--7037973	3	13.7	3	100	0	82	68	0	0	31	0.90
7042076--7042221	75	1.9	75	81	0	175	34	15	20	29	1.94
7048411--7048440	15	1.9	16	93	6	53	26	3	0	70	1.03
7053449--7053507	21	2.7	22	85	10	77	49	0	0	50	1.00
7053487--7053562	29	2.6	29	74	12	75	52	1	1	44	1.17
7053548--7053583	19	1.9	18	94	5	63	69	0	0	30	0.89
7054178--7054216	16	2.4	16	87	8	53	82	2	2	12	0.89
7054785--7054828	15	2.9	15	96	0	79	29	6	9	54	1.58
7057393--7057440	6	8.0	6	77	9	53	29	4	2	64	1.23
7061649--7061710	31	2.0	31	93	0	106	37	17	20	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7061799--7061859	31	2.0	31	83	6	79	40	11	18	29	1.85
7061603--7061897	149	2.0	148	90	0	464	29	14	18	36	1.92
7064205--7064277	29	2.5	29	84	6	85	47	4	8	39	1.52
7064219--7064327	29	3.7	29	76	11	96	50	3	11	34	1.55
7068494--7068549	22	2.6	22	91	2	87	32	5	0	62	1.18
7069369--7069415	5	9.4	5	86	9	69	17	2	2	78	0.94
7069358--7069412	25	2.2	25	83	6	67	18	3	3	74	1.11
7069444--7069782	58	5.8	58	91	2	516	42	5	14	37	1.70
7080999--7081032	14	2.4	14	95	0	59	17	20	17	44	1.87
7082102--7082317	117	1.8	117	92	0	369	23	16	14	45	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100