genome.fa.s168.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  72  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12772727--12772767	21	2.0	20	85	4	55	29	9	12	48	1.72
12778947--12779086	23	6.0	23	75	17	94	56	0	0	42	1.09
12778965--12779102	7	18.3	7	67	22	59	58	0	1	39	1.12
12778965--12779098	36	4.1	34	74	18	101	58	0	1	39	1.13
12779013--12779086	26	2.8	27	75	17	75	56	1	0	41	1.07
12779044--12779102	23	2.5	23	83	8	57	61	0	1	37	1.07
12779119--12779206	19	4.9	18	71	21	69	47	0	1	51	1.08
12779128--12779240	16	7.1	16	65	27	55	49	0	0	48	1.13
12779185--12779248	26	2.5	26	90	5	96	50	1	0	48	1.10
12779183--12779248	9	7.7	9	70	21	52	48	1	0	50	1.10
12779364--12779396	14	2.4	14	90	5	50	45	12	3	39	1.57
12782510--12782543	6	5.7	6	100	0	68	32	0	0	67	0.91
12782632--12782719	45	2.0	45	95	0	158	43	5	11	39	1.64
12792144--12792187	22	2.0	22	90	0	70	31	9	13	45	1.75
12796194--12796238	22	2.0	22	86	0	63	37	4	13	44	1.64
12797260--12797303	22	2.0	22	100	0	88	36	13	9	40	1.76
12807167--12807210	22	2.0	22	91	8	72	31	9	13	45	1.75
12807341--12807390	26	2.0	26	88	7	77	20	12	8	60	1.57
12807454--12807516	25	2.5	25	84	0	81	19	25	17	38	1.93
12811223--12811266	22	2.0	22	86	8	63	29	9	13	47	1.74
12812728--12812767	15	2.6	16	84	4	55	35	7	10	47	1.65
12819166--12819222	30	1.9	30	92	0	96	36	10	10	42	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12820934--12820958	5	5.0	5	100	0	50	80	0	0	20	0.72
12821996--12822044	9	5.6	9	82	4	55	40	0	0	59	0.98
12822002--12822043	3	14.3	3	95	5	77	35	0	0	64	0.94
12827601--12827661	26	2.3	26	89	10	106	47	0	3	49	1.18
12827609--12827659	16	3.6	16	70	29	60	45	0	3	50	1.20
12827630--12827669	15	2.6	15	80	4	53	50	0	2	47	1.14
12827630--12827749	34	3.6	33	76	16	97	53	0	1	44	1.16
12827828--12827870	17	2.7	16	86	10	61	44	2	2	51	1.27
12828232--12828268	20	2.0	20	84	10	51	45	0	0	54	1.00
12828218--12828270	23	2.4	23	81	9	67	49	0	0	50	1.00
12828836--12828865	2	15.0	2	100	0	60	50	0	0	50	1.00
12829327--12829365	20	2.0	20	90	10	62	64	0	5	30	1.15
12835109--12835141	17	1.9	17	88	11	50	51	9	15	24	1.72
12840483--12840532	26	1.9	26	100	0	100	42	8	12	38	1.71
12842818--12842845	13	2.2	13	100	0	56	71	0	0	28	0.86
12842819--12842873	21	2.6	21	70	0	56	61	1	1	34	1.17
12842885--12842921	19	1.9	19	94	0	65	32	5	0	62	1.18
12842916--12842960	16	2.8	16	82	0	54	51	2	0	46	1.13
12842912--12842989	40	2.0	40	87	5	113	50	2	1	46	1.23
12843026--12843093	21	3.4	21	73	20	65	63	2	1	32	1.18
12843027--12843082	20	2.9	19	82	12	69	62	3	1	32	1.23
12843110--12843148	17	2.3	16	86	8	51	84	5	2	7	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12843119--12843155	16	2.2	16	90	4	56	78	5	2	13	1.03
12843288--12843345	18	3.5	17	68	17	50	18	3	8	68	1.30
12843379--12843502	10	12.6	10	73	15	71	35	3	4	57	1.34
12843509--12843557	21	2.4	21	79	3	55	26	0	2	71	0.97
12843529--12843596	31	2.2	30	82	7	84	23	0	5	70	1.09
12843552--12843613	22	2.8	21	85	7	79	24	1	9	64	1.33
12843684--12843734	9	5.4	10	86	6	63	23	1	0	74	0.92
12843684--12843718	10	3.5	10	96	0	52	28	2	0	68	1.04
12844572--12844617	13	3.3	13	80	14	56	34	0	6	58	1.24
12852540--12852574	2	17.5	2	87	0	52	48	0	2	48	1.16
12856637--12856672	18	1.9	19	88	5	56	75	0	11	13	1.06
12862815--12862844	13	2.3	13	94	0	51	10	0	10	80	0.92
12863146--12863205	11	5.7	10	76	9	57	5	13	0	81	0.84
12873082--12873121	2	20.0	2	100	0	80	0	50	0	50	1.00
12875934--12875989	27	2.1	27	89	0	85	42	19	10	26	1.84
12880071--12880101	15	2.1	15	93	0	53	38	3	16	41	1.64
12880669--12880763	24	4.1	22	71	18	54	48	1	2	48	1.20
12880715--12880765	21	2.5	21	81	12	54	50	1	0	47	1.12
12880735--12880816	31	2.6	33	77	11	91	52	0	0	47	1.00
12880765--12880841	30	2.5	30	85	10	95	49	0	0	50	1.00
12881464--12881502	11	3.5	11	85	0	60	20	0	2	76	0.90
12881454--12881502	22	2.3	21	92	3	80	24	0	2	73	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12882884--12882924	2	20.5	2	94	0	73	0	46	0	53	1.00
12884265--12884294	5	6.0	5	92	0	51	0	36	0	63	0.95
12884955--12885000	24	2.0	23	82	4	56	19	4	10	65	1.41
12890649--12890840	96	2.0	96	100	0	384	32	8	25	34	1.85
12892893--12892922	3	10.0	3	100	0	60	66	0	0	33	0.92
12899732--12899785	23	2.3	23	81	12	74	35	3	5	55	1.41
12901826--12901867	21	2.0	22	85	4	59	38	16	2	42	1.61
12902123--12902167	22	2.0	22	91	0	72	17	35	4	42	1.70
12904557--12904620	20	2.9	23	84	11	73	67	1	1	29	1.09
12904558--12904616	28	2.1	29	87	3	84	66	1	1	30	1.12
12913082--12913217	68	2.0	67	85	4	184	25	16	28	30	1.96
12914994--12915032	18	2.0	20	85	9	55	30	0	0	69	0.89
12914992--12915035	18	2.5	18	81	3	54	36	0	0	63	0.95
12919297--12919386	40	2.2	40	100	0	180	23	18	11	46	1.81
12921098--12921142	8	6.0	7	82	10	54	26	0	4	68	1.08
12921098--12921144	15	3.1	15	77	17	60	27	0	4	68	1.08
12921303--12921350	17	3.0	16	85	14	64	12	14	0	72	1.11
12921661--12921691	14	2.3	13	94	5	53	6	3	0	90	0.55
12921663--12921707	22	2.0	23	86	4	65	6	6	4	82	0.95
12921957--12921997	20	2.1	20	86	4	57	7	12	0	80	0.90
12922080--12922104	8	3.1	8	100	0	50	12	0	0	88	0.53
12923592--12923633	16	2.7	16	88	3	59	19	2	0	78	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12925278--12925315	14	2.7	14	84	12	51	13	2	15	68	1.32
12931629--12931676	24	2.0	24	100	0	96	25	8	29	37	1.85
12934689--12934718	11	2.6	12	94	5	53	76	3	0	20	0.92
12935015--12935081	18	3.5	18	71	26	57	73	5	2	17	1.17
12935042--12935109	22	3.3	21	76	15	61	76	2	4	16	1.07
12938927--12939212	43	6.6	43	78	10	224	29	12	15	43	1.83
12938920--12939212	86	3.4	86	81	7	272	28	12	15	43	1.83
12938928--12939239	130	2.4	130	79	9	291	28	11	16	44	1.82
12938972--12939250	86	3.2	86	79	9	223	26	11	17	44	1.82
12940359--12940398	21	1.9	21	94	0	71	20	2	22	55	1.56
12942368--12942577	58	3.5	58	75	11	174	44	13	2	39	1.58
12942409--12942616	58	3.5	59	77	9	165	43	14	3	37	1.64
12944244--12944277	2	16.5	2	87	6	50	50	5	0	44	1.26
12944399--12944449	26	2.0	26	85	14	70	37	7	0	54	1.29
12944901--12944976	32	2.3	32	78	10	84	48	1	2	47	1.24
12945515--12945574	30	2.0	29	87	3	84	31	10	0	58	1.31
12945892--12945974	41	2.0	41	90	0	130	26	8	18	46	1.77
12949666--12949708	20	2.1	21	86	4	61	46	9	2	41	1.48
12949867--12949902	18	2.1	16	90	10	54	61	0	0	38	0.96
12949935--12950036	33	3.1	33	71	17	86	51	7	1	38	1.42
12951430--12951479	22	2.3	21	77	16	57	48	2	6	44	1.39
12951856--12951902	23	2.0	23	83	0	58	44	4	2	48	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12954120--12954158	20	1.9	21	84	5	53	41	10	12	35	1.77
12965055--12965123	29	2.4	28	78	2	75	57	1	0	40	1.07
12968342--12968371	2	15.0	2	92	0	51	50	3	0	46	1.18
12976415--12976441	8	3.4	8	100	0	54	55	0	0	44	0.99
12980714--12980933	109	2.0	109	98	0	422	37	17	20	25	1.94
12982151--12982183	18	1.9	17	88	11	50	39	12	6	42	1.67
12982194--12982223	7	4.1	7	91	8	51	26	0	0	73	0.84
12982180--12982217	19	2.0	20	84	5	51	26	0	0	73	0.83
12982194--12982223	15	2.1	15	93	6	53	26	0	0	73	0.84
12982292--12982379	45	2.0	45	95	4	160	47	1	0	51	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100