genome.fa.s168.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  20  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3892519--3892563	22	2.0	23	86	4	65	26	26	20	26	1.99
3892464--3893084	110	5.7	110	81	2	633	38	18	19	23	1.93
3892734--3892776	22	2.0	22	85	0	59	32	20	20	25	1.97
3893155--3893221	23	3.0	23	80	10	75	28	17	26	26	1.98
3893282--3893376	22	4.2	22	84	6	102	32	22	20	25	1.97
3893074--3893352	132	2.1	131	84	4	355	37	17	21	23	1.94
3893165--3893479	154	2.0	155	83	5	397	35	19	21	23	1.96
3893342--3893553	109	1.9	111	84	1	284	37	19	21	22	1.95
3893325--3893588	109	2.4	109	79	6	264	35	19	22	22	1.96
3893548--3893610	22	2.9	22	88	7	101	28	17	23	30	1.97
3893586--3893832	122	2.0	123	95	0	442	37	16	12	33	1.87
3894063--3894167	41	2.6	41	92	3	176	29	16	18	36	1.92
3896440--3896491	18	2.9	18	85	0	59	3	9	0	86	0.69
3900754--3900790	13	3.0	13	80	11	51	67	10	0	21	1.21
3902388--3902497	51	2.2	51	83	6	134	16	0	35	47	1.53
3902460--3902554	30	3.2	30	70	18	90	17	1	34	46	1.56
3902519--3902550	15	2.1	15	94	0	55	18	3	31	46	1.65
3903623--3903655	14	2.3	14	94	5	57	6	12	6	75	1.16
3906135--3906199	30	2.2	30	91	0	103	20	15	15	49	1.80
3909077--3909131	29	1.9	28	85	3	74	41	3	3	50	1.37
3916887--3916965	39	2.0	40	90	5	124	31	22	15	30	1.95
3917213--3917250	19	2.0	19	85	10	51	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3918663--3918707	23	1.9	24	86	4	65	62	0	0	37	0.96
3920848--3920905	3	20.3	3	86	10	86	32	0	1	65	1.03
3921358--3921400	10	4.3	10	80	8	52	4	6	23	65	1.37
3921764--3921808	20	2.3	19	88	7	72	11	2	2	84	0.80
3923185--3923224	21	1.9	21	89	0	62	17	2	10	70	1.27
3923733--3923899	43	3.8	43	78	7	167	47	15	7	28	1.73
3923733--3923897	87	1.9	85	82	6	206	47	15	7	29	1.74
3924647--3924743	22	4.4	22	75	7	90	30	11	21	36	1.89
3924642--3924743	44	2.3	43	81	3	123	30	12	20	36	1.90
3925003--3925042	16	2.5	17	84	8	57	37	20	0	42	1.52
3926081--3926108	12	2.3	12	100	0	56	46	7	7	39	1.59
3929087--3929691	59	10.2	59	86	6	771	34	12	7	45	1.70
3929087--3929691	119	5.1	117	87	6	844	34	12	7	45	1.70
3929215--3929306	27	3.2	27	67	14	76	38	11	6	43	1.68
3929727--3929868	8	16.5	8	70	18	63	74	2	3	19	1.09
3929718--3929867	18	8.6	18	72	16	63	74	2	3	19	1.08
3929698--3929840	5	27.0	5	67	21	53	74	2	4	18	1.12
3929803--3929868	4	16.5	4	77	16	66	75	1	1	21	0.96
3929732--3929864	16	8.5	15	72	19	94	74	3	3	18	1.10
3929759--3929868	12	9.8	11	74	16	68	74	2	1	20	1.03
3929792--3929868	24	3.2	24	74	20	79	72	3	1	22	1.08
3930634--3930680	21	2.2	21	85	11	60	65	6	4	23	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3930698--3930730	17	1.9	17	93	0	57	78	0	12	9	0.95
3930771--3930878	20	5.3	19	70	25	62	73	1	2	22	1.06
3930821--3930878	6	9.2	6	77	17	55	75	1	1	20	0.97
3931543--3931710	44	3.8	44	79	3	178	45	18	8	27	1.79
3932380--3932501	44	2.8	44	83	0	163	36	10	17	36	1.84
3932384--3932483	22	4.6	21	73	12	85	36	12	17	35	1.86
3932469--3932524	22	2.5	22	80	11	78	35	16	16	32	1.90
3934018--3934051	9	3.7	9	84	7	50	5	11	0	82	0.83
3934017--3934051	10	3.6	10	84	7	54	5	11	0	82	0.82
3934015--3934051	19	1.9	19	100	0	74	5	16	0	78	0.93
3934400--3934434	18	1.9	18	88	0	52	0	2	11	85	0.69
3936875--3936962	41	2.1	41	87	4	124	35	9	18	37	1.82
3939126--3939166	16	2.5	17	80	8	57	31	2	0	65	1.05
3942703--3942733	1	31.0	1	93	0	53	96	3	0	0	0.21
3943615--3944347	149	4.9	149	94	2	1286	36	11	8	42	1.72
3943615--3944347	304	2.4	302	95	1	1330	36	11	8	42	1.72
3945134--3945161	3	9.3	3	100	0	56	32	0	0	67	0.91
3945177--3945646	150	3.0	154	84	8	608	42	23	9	25	1.83
3946419--3946459	20	2.0	20	100	0	82	46	9	9	34	1.70
3946984--3947023	20	2.0	20	100	0	80	25	20	15	40	1.90
3953312--3953344	15	2.1	16	88	5	50	36	0	0	63	0.95
3954526--3954661	52	2.6	52	84	9	179	28	18	5	47	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3955619--3955678	27	2.3	26	80	8	68	35	11	0	53	1.38
3955951--3956032	40	2.0	41	90	4	130	31	14	9	43	1.78
3958243--3958308	26	2.6	26	86	11	100	51	1	0	46	1.10
3958277--3958316	15	2.6	15	88	4	62	52	0	0	47	1.00
3958277--3958354	16	4.6	16	74	15	68	52	0	0	47	1.00
3958277--3958359	17	4.9	16	73	15	53	51	0	0	48	1.00
3958408--3958569	13	12.5	13	67	21	65	42	2	1	53	1.22
3958496--3958569	10	7.2	10	72	22	64	43	1	0	55	1.08
3958484--3958563	15	4.9	16	74	21	69	45	1	0	53	1.08
3959088--3959135	24	2.0	24	100	0	96	41	20	8	29	1.81
3977632--3977689	24	2.4	24	75	16	66	34	5	3	56	1.38
3984771--3984868	51	1.9	51	89	0	151	26	10	18	44	1.81
3991956--3992021	24	2.8	24	100	0	132	40	4	30	24	1.75
3991956--3992015	12	5.0	12	69	15	52	40	5	30	25	1.77
3994236--3994292	21	2.7	21	76	13	62	24	3	24	47	1.68
3994804--3994842	18	2.1	19	90	4	62	17	2	0	79	0.84
3996047--3996295	40	6.3	39	80	7	157	42	16	10	30	1.82
3996047--3996300	80	3.2	79	76	7	230	42	16	10	30	1.82
3996490--3996584	40	2.4	39	79	10	104	45	20	6	28	1.75
3996436--3996584	79	1.9	80	83	4	194	42	16	12	28	1.84
4009130--4009183	6	9.7	6	82	8	53	70	11	0	18	1.16
4009118--4009183	12	5.8	11	74	16	55	71	10	0	18	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4009501--4009539	19	2.1	19	90	9	62	48	17	12	20	1.80
4009978--4010003	3	8.7	3	100	0	52	65	0	0	34	0.93
4016606--4016740	64	2.1	66	84	2	175	34	18	14	32	1.92
4019020--4019066	24	2.0	24	83	8	60	63	2	10	23	1.37
4019448--4019707	130	2.0	130	96	0	486	33	19	22	24	1.97
4019761--4019819	26	2.2	27	82	8	68	20	1	6	71	1.18
4019758--4019823	27	2.5	28	78	9	75	19	1	9	69	1.23
4020042--4020084	21	2.0	21	91	8	70	81	0	0	18	0.69
4020399--4020444	23	2.0	22	84	12	58	71	2	2	23	1.08
4020503--4020606	50	2.1	50	81	3	120	40	6	10	42	1.66
4020780--4020811	3	10.7	3	100	0	64	65	0	0	34	0.93
4021581--4021855	63	4.4	63	84	1	320	30	22	9	37	1.86
4021581--4021854	125	2.2	125	84	0	359	31	22	9	36	1.86
4022565--4022611	20	2.5	19	83	10	60	0	19	2	78	0.85
4022556--4022608	8	6.1	8	79	18	54	0	18	1	79	0.83
4022558--4022610	12	4.0	12	75	20	52	0	16	1	81	0.79
4026540--4026655	55	2.1	55	82	7	148	31	13	8	46	1.74
4027042--4027075	8	4.1	8	88	3	50	20	0	0	79	0.73
4027105--4027178	18	4.1	17	69	20	53	68	8	5	17	1.33
4027832--4027878	7	6.7	7	81	13	53	14	2	0	82	0.75
4027832--4027878	18	2.7	17	90	9	69	14	2	0	82	0.75
4027926--4027982	26	2.2	26	83	0	78	45	1	0	52	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4028003--4028070	31	2.2	31	81	5	75	64	4	0	30	1.13
4028268--4028311	21	2.1	21	91	0	70	47	20	31	0	1.50
4041817--4041861	22	2.0	22	91	0	72	35	4	4	55	1.40
4043512--4043537	2	13.0	2	100	0	52	50	0	0	50	1.00
4049023--4049293	115	2.4	115	84	1	366	37	13	5	43	1.68
4049023--4049293	57	4.7	58	87	2	350	37	13	5	43	1.68
4049305--4049393	9	10.8	8	75	12	65	79	2	4	13	0.97
4049308--4049409	30	3.6	29	79	15	106	79	1	4	13	0.98
4049310--4049397	12	7.2	11	75	17	68	80	2	3	13	0.93
4049305--4049404	38	2.6	38	78	16	98	79	2	5	14	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100