genome.fa.s168.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  61  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11067298--11067348	22	2.3	23	81	18	56	29	0	7	62	1.23
11068655--11068703	20	2.4	21	86	6	73	28	0	4	67	1.09
11070016--11070060	17	2.8	16	78	21	58	75	0	0	24	0.80
11070429--11070472	14	2.9	15	81	18	63	75	0	0	25	0.81
11069952--11070779	412	2.0	411	94	3	1459	41	12	10	35	1.77
11071099--11071135	19	1.9	19	100	0	74	40	5	0	54	1.24
11081201--11081306	33	3.3	33	80	9	112	27	2	4	65	1.27
11081197--11081275	29	2.7	30	86	7	108	29	1	1	68	1.05
11084627--11084669	17	2.6	16	78	10	50	67	4	9	18	1.36
11086320--11086370	21	2.5	21	90	9	79	49	0	0	50	1.00
11086343--11086399	30	1.9	30	88	0	87	52	0	0	47	1.00
11093360--11093393	17	2.0	17	88	0	50	26	8	5	58	1.51
11104337--11104532	100	2.0	100	96	0	365	50	16	11	21	1.77
11108305--11108421	40	2.9	40	87	0	162	44	20	10	24	1.82
11120854--11120906	11	4.9	11	86	13	58	24	0	3	71	1.02
11121179--11121211	16	2.0	17	94	5	59	48	0	0	51	1.00
11121299--11121392	25	3.8	25	84	6	102	75	8	0	15	1.03
11121299--11121383	24	3.5	24	82	9	91	74	8	0	17	1.06
11121299--11121354	12	4.7	12	76	14	62	71	8	0	19	1.12
11121351--11121397	6	7.7	6	81	13	51	82	6	2	8	0.90
11121325--11121397	12	6.0	11	75	19	56	79	8	1	10	0.99
11121350--11121392	13	3.4	13	83	3	61	83	6	0	9	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11121730--11121766	19	2.0	18	94	5	65	43	18	16	21	1.88
11121655--11121773	51	2.3	51	81	2	132	40	18	12	28	1.87
11121687--11121795	51	2.1	51	81	3	121	40	21	11	27	1.86
11122222--11122266	23	2.0	21	91	8	72	68	2	0	28	1.01
11123513--11123553	21	2.0	21	85	9	57	24	7	31	36	1.83
11126417--11126490	29	2.5	30	97	2	141	50	8	0	41	1.32
11126858--11126906	25	1.9	26	87	4	73	44	8	2	44	1.45
11126927--11126957	14	2.2	14	94	0	53	45	3	0	51	1.17
11127482--11127535	21	2.8	19	86	13	83	48	0	0	51	1.00
11127546--11127591	19	2.3	21	85	7	60	65	0	0	34	0.93
11132410--11132455	18	2.6	19	76	13	53	47	2	0	50	1.13
11133051--11133093	22	1.9	23	85	4	61	27	4	4	62	1.35
11135900--11135953	21	2.6	21	77	13	67	22	3	1	72	1.10
11138117--11138250	64	2.1	65	81	4	155	44	5	12	37	1.67
11151766--11151870	21	5.0	21	84	0	129	39	30	7	22	1.82
11152494--11152540	13	3.1	15	82	11	53	65	10	0	23	1.23
11157793--11157892	51	2.0	51	89	0	155	43	7	20	30	1.78
11159017--11159050	15	2.3	15	89	0	50	52	2	23	20	1.60
11159250--11159332	43	2.0	43	85	7	116	39	33	9	16	1.82
11160091--11160133	22	2.0	22	90	4	70	74	4	9	11	1.20
11160710--11160752	18	2.5	17	81	11	52	74	6	2	16	1.14
11160873--11160932	29	2.1	28	82	14	70	51	3	3	41	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11160927--11160973	12	3.9	12	80	5	51	61	0	0	38	0.96
11161170--11161204	18	1.9	18	88	0	52	74	2	2	20	1.08
11164550--11164696	75	2.0	75	95	0	267	29	16	15	38	1.89
11164822--11164963	72	2.0	72	94	0	248	35	16	25	23	1.95
11167253--11167289	1	37.0	1	100	0	74	100	0	0	0	0.00
11182284--11182331	8	6.1	8	80	4	53	50	8	2	39	1.44
11188744--11188770	14	1.9	14	100	0	54	51	3	7	37	1.48
11194349--11194407	31	1.9	31	85	0	82	35	10	15	38	1.81
11197730--11197768	19	2.1	19	100	0	78	15	30	12	41	1.85
11199965--11200015	26	2.0	26	88	7	77	29	5	9	54	1.56
11200157--11200190	6	5.7	6	96	0	50	0	14	8	76	1.01
11202536--11202590	23	2.3	23	84	6	65	50	7	23	18	1.71
11204131--11204167	2	18.5	2	100	0	74	51	0	0	48	1.00
11204875--11204926	24	2.2	24	86	6	70	5	15	3	75	1.14
11204886--11204939	24	2.2	24	81	15	67	3	18	1	75	1.03
11204911--11204949	20	2.0	20	90	10	62	7	20	0	71	1.10
11205161--11205203	20	2.2	19	95	4	77	34	0	0	65	0.93
11209827--11209885	4	13.8	4	77	10	55	67	1	6	23	1.24
11217264--11217298	18	1.9	18	88	0	52	14	2	8	74	1.17
11218518--11218551	14	2.4	14	86	13	52	73	5	0	20	1.04
11219973--11220077	50	2.1	50	92	0	174	38	20	10	30	1.87
11223148--11223180	2	16.5	2	100	0	66	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11227170--11227371	110	1.8	111	87	3	300	32	8	6	52	1.58
11227718--11227789	7	10.3	7	71	20	53	70	0	0	29	0.87
11227719--11227785	24	2.7	26	88	6	111	70	0	0	29	0.88
11227717--11227793	15	4.7	15	73	19	57	71	0	0	28	0.86
11227699--11227788	26	3.5	27	88	11	145	70	0	0	30	0.88
11227700--11227799	50	2.0	51	90	5	159	70	0	0	30	0.88
11227699--11227800	26	4.1	25	83	14	104	70	0	0	29	0.87
11229100--11229273	43	4.0	43	82	5	165	41	14	13	30	1.85
11235498--11235558	20	3.0	20	83	9	61	21	4	1	72	1.13
11235511--11235558	20	2.3	20	86	10	62	25	4	0	70	1.04
11235619--11235647	12	2.3	13	94	5	51	24	0	0	75	0.80
11236575--11236639	13	5.3	12	78	10	69	64	0	0	35	0.94
11246269--11246353	10	8.4	10	67	17	50	49	3	4	42	1.41
11246254--11246353	34	2.9	34	75	4	101	50	5	5	40	1.46
11246790--11246829	21	2.0	21	85	5	55	27	0	7	65	1.20
11246912--11246994	34	2.4	34	86	7	107	60	8	1	30	1.34
11246920--11247071	79	1.9	81	83	5	202	57	6	2	33	1.39
11247002--11247104	33	3.2	33	78	5	111	55	4	3	35	1.40
11255793--11255848	29	1.9	29	100	0	112	58	12	14	14	1.63
11264432--11264470	20	2.0	20	89	0	60	30	10	17	41	1.83
11267477--11267505	3	9.7	3	100	0	58	31	0	0	68	0.89
11268338--11268367	14	2.1	14	100	0	60	56	20	0	23	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11280134--11280178	23	2.0	23	86	8	65	42	4	0	53	1.21
11305848--11305893	20	2.2	20	84	7	56	45	0	2	52	1.13
11305839--11305893	22	2.6	22	80	5	60	47	1	1	49	1.23
11306121--11306319	98	2.0	99	95	0	355	36	15	15	33	1.89
11306790--11306848	29	2.0	29	86	0	82	28	6	5	59	1.45
11307080--11307155	31	2.5	30	82	4	98	47	7	19	25	1.76
11320406--11320472	16	4.3	15	77	11	64	73	0	2	23	0.97
11320406--11320464	32	1.9	29	90	10	91	71	0	3	25	1.02
11320430--11320474	22	2.0	22	91	8	74	73	0	2	24	0.95
11321325--11321462	3	48.3	3	79	9	146	62	3	2	31	1.24
11325492--11325532	21	2.0	21	85	0	55	48	2	9	39	1.49
11325684--11325716	9	3.3	10	91	8	50	54	0	0	45	0.99
11325699--11325795	50	1.9	52	85	8	137	47	2	3	47	1.29
11326739--11326772	3	11.3	3	100	0	68	64	0	0	35	0.94
11326771--11326797	3	9.0	3	100	0	54	33	0	0	66	0.92
11326954--11327033	10	7.8	10	75	12	56	46	12	1	40	1.50
11327257--11327327	37	1.9	37	85	0	97	54	4	2	38	1.34
11327657--11327707	19	2.7	19	81	6	59	27	0	11	60	1.31
11327752--11327792	9	3.7	11	84	15	50	26	2	2	68	1.15
11327656--11327775	9	12.8	9	67	11	62	31	2	7	58	1.39
11328712--11328778	22	2.9	23	70	16	59	47	1	1	49	1.19
11333035--11333115	44	1.9	44	85	7	114	41	20	9	27	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11344887--11344918	15	2.1	15	100	0	64	40	34	6	18	1.76
11345928--11345963	18	1.9	19	88	5	56	55	0	2	41	1.14
11346523--11346600	9	8.6	9	76	1	57	53	2	5	38	1.37
11346548--11346595	18	2.7	18	90	0	78	50	2	8	39	1.44
11346722--11346766	18	2.6	18	82	3	56	42	6	0	51	1.28
11350517--11350875	179	2.0	179	96	0	664	37	20	14	28	1.91
11354004--11354049	20	2.2	20	84	7	56	34	4	6	54	1.46
11357409--11357492	9	9.3	9	74	16	50	65	8	1	25	1.27
11357420--11357486	27	2.6	25	83	7	80	67	4	1	26	1.19
11357436--11357540	27	3.7	29	76	10	83	62	6	0	29	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100