genome.fa.s168.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  42  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7859959--7860375	123	3.4	123	84	4	527	25	13	19	41	1.88
7870180--7870235	15	3.9	15	72	9	53	75	10	5	8	1.19
7870420--7870451	2	16.0	2	100	0	64	50	0	0	50	1.00
7870490--7870519	14	2.1	14	93	0	51	73	3	0	23	0.98
7873825--7873960	73	1.9	73	87	3	202	36	30	5	27	1.79
7874087--7874217	52	2.5	52	81	9	169	28	20	8	42	1.81
7874258--7874296	11	3.5	11	82	0	51	51	23	0	25	1.49
7879870--7879907	20	2.0	20	85	10	53	52	0	5	42	1.24
7879856--7879913	28	2.2	26	81	12	64	55	1	5	37	1.33
7881585--7881637	25	2.1	25	86	6	72	45	7	5	41	1.56
7886365--7886389	12	2.1	12	100	0	50	60	16	0	24	1.36
7890016--7890246	113	2.0	113	89	1	347	15	25	11	47	1.78
7890837--7890879	20	2.2	19	91	4	68	48	11	9	30	1.71
7892816--7892859	18	2.4	18	84	3	52	59	13	11	15	1.62
7894679--7894711	2	16.5	2	100	0	66	48	0	51	0	1.00
7897910--7897939	15	2.0	15	100	0	60	33	6	40	20	1.78
7899219--7899256	15	2.4	16	86	4	51	31	0	2	65	1.06
7900382--7900444	20	3.3	20	76	13	69	34	1	12	50	1.50
7900382--7900452	37	1.9	37	94	0	124	33	1	12	52	1.48
7900396--7900452	17	3.1	18	76	14	71	33	0	10	56	1.34
7900492--7900529	20	1.9	20	84	10	51	47	2	15	34	1.60
7906108--7906134	12	2.2	12	100	0	54	7	51	7	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7908377--7908409	13	2.6	13	90	4	50	66	0	15	18	1.25
7913583--7913663	18	4.3	17	69	25	56	82	4	6	6	0.94
7913585--7913662	12	5.9	13	72	19	56	82	5	6	6	0.96
7914415--7914827	119	3.5	120	76	8	396	17	20	16	45	1.86
7914415--7914941	237	2.2	237	78	7	539	18	20	15	45	1.85
7915355--7915467	56	2.0	56	82	0	136	16	26	17	38	1.91
7914737--7915593	472	1.8	474	80	3	1035	19	22	14	44	1.86
7915508--7915954	120	3.7	120	79	6	338	18	21	14	46	1.84
7915606--7915943	120	2.8	119	82	5	353	18	20	14	46	1.84
7916141--7916180	3	13.3	3	100	0	80	32	0	0	67	0.91
7916606--7916647	20	2.1	20	86	0	57	19	9	26	45	1.80
7917149--7917197	5	9.0	6	91	8	63	32	0	0	67	0.91
7918023--7918047	2	12.5	2	100	0	50	48	0	0	52	1.00
7923298--7923357	32	1.9	32	86	3	86	56	1	1	40	1.19
7924127--7924161	18	1.9	18	88	0	52	65	2	5	25	1.28
7924731--7924794	22	2.9	22	72	9	58	70	1	1	26	1.05
7927207--7927240	2	17.0	2	87	0	50	47	0	50	2	1.16
7930146--7930219	21	3.6	20	74	18	64	36	1	8	54	1.39
7930141--7930208	23	3.2	22	76	20	81	35	2	10	51	1.51
7936109--7936150	20	2.2	19	87	12	59	33	0	4	61	1.17
7936311--7936344	15	2.3	15	94	0	59	47	0	0	52	1.00
7936335--7936374	18	2.2	18	86	8	55	57	0	2	40	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7938840--7938928	43	2.1	43	95	0	160	30	13	13	42	1.83
7941387--7941449	29	2.2	29	97	0	117	15	30	4	49	1.66
7943512--7946233	369	7.4	369	88	2	3971	18	32	23	25	1.97
7943512--7946233	740	3.7	738	89	2	4015	18	32	23	25	1.97
7951875--7951909	18	1.9	18	88	0	52	22	0	2	74	0.95
7952015--7952039	10	2.5	10	100	0	50	76	8	0	16	1.02
7952632--7952677	20	2.4	19	85	3	56	13	10	6	69	1.35
7953081--7953120	20	2.0	20	85	9	55	27	7	0	65	1.20
7953302--7953731	47	9.0	47	86	4	569	36	23	12	27	1.91
7953302--7953729	96	4.5	95	85	5	578	36	23	12	27	1.91
7963572--7963609	15	2.4	16	86	4	51	31	0	2	65	1.06
7964734--7964796	20	3.3	20	76	13	69	34	1	12	50	1.50
7964734--7964804	37	1.9	37	94	0	124	33	1	12	52	1.48
7964748--7964804	17	3.1	18	76	14	71	33	0	10	56	1.34
7964844--7964881	20	1.9	20	84	10	51	47	2	15	34	1.60
7986183--7986339	52	3.0	52	85	7	194	26	21	7	44	1.78
7987838--7987873	15	2.4	15	95	0	63	13	8	13	63	1.50
7988878--7988911	16	2.1	16	89	10	52	82	2	8	5	0.93
7988874--7988919	18	2.6	18	80	16	51	82	2	10	4	0.89
7989022--7989256	58	4.0	59	92	2	384	39	12	5	42	1.68
7989280--7989333	6	9.5	6	87	4	69	79	0	3	16	0.87
7989280--7989332	5	9.6	5	86	10	52	79	0	3	16	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7989414--7989449	13	2.8	13	100	0	72	5	33	38	22	1.77
7990203--7990316	42	2.7	40	83	6	129	64	0	6	28	1.23
7990210--7990313	20	5.0	20	83	11	120	65	0	5	27	1.22
7990228--7990422	4	49.2	4	66	17	79	65	3	3	27	1.24
7990240--7990460	14	15.8	13	69	18	74	66	3	2	27	1.20
7990230--7990422	32	6.2	31	73	19	120	65	3	3	27	1.24
7990416--7990460	6	7.8	6	80	14	51	71	2	0	26	0.98
7990418--7990460	7	6.3	7	86	7	54	72	2	0	25	0.97
7990636--7990803	45	3.7	45	95	0	291	39	23	13	23	1.90
7990811--7990904	41	2.3	41	87	3	136	38	23	11	26	1.89
7991895--7991962	9	7.3	9	77	15	59	4	19	0	76	0.95
7991899--7991956	23	2.4	24	80	8	64	5	17	0	77	0.94
7991911--7991941	16	1.9	16	93	0	53	3	9	0	87	0.66
7991899--7991960	26	2.3	26	86	8	81	4	16	0	79	0.90
7991899--7991957	24	2.4	25	80	8	68	5	16	0	77	0.93
7996620--7996854	36	6.3	38	67	21	129	25	14	5	54	1.62
7996620--7996854	38	6.3	36	68	17	124	25	14	5	54	1.62
7996748--7996830	40	2.1	40	84	4	105	24	13	2	60	1.45
7996797--7996875	37	2.2	36	80	13	90	32	11	8	46	1.71
7996669--7996900	113	2.0	114	79	8	249	27	12	6	53	1.62
7996931--7997025	38	2.5	38	84	0	136	28	18	6	46	1.74
7996808--7997037	38	6.2	37	71	9	128	27	15	8	48	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7997796--7997821	13	2.0	13	100	0	52	15	0	23	61	1.33
7997917--7997981	27	2.4	27	85	10	96	16	0	20	63	1.32
7997903--7998006	33	3.3	33	76	15	112	22	0	18	59	1.37
7998155--7998801	334	1.9	334	90	3	1027	34	3	12	49	1.58
8002053--8002098	17	2.7	17	80	12	67	30	0	21	47	1.51
8002616--8002675	15	3.3	19	75	20	65	28	1	20	50	1.58
8002928--8002993	20	3.3	20	83	6	80	31	1	10	56	1.43
8003106--8003153	25	1.9	25	86	0	69	27	8	20	43	1.80
8009013--8009038	5	5.2	5	100	0	52	19	0	0	80	0.71
8010044--8010350	152	2.0	153	83	6	392	41	8	5	44	1.58
8010787--8010838	23	2.2	24	87	12	74	57	3	0	38	1.17
8013429--8013458	14	2.1	15	93	6	53	63	6	0	30	1.20
8013426--8013486	22	2.8	22	85	5	79	60	6	3	29	1.38
8013985--8014139	44	3.5	45	81	7	142	47	4	9	38	1.57
8013907--8014270	22	16.6	22	72	12	121	48	4	9	37	1.55
8014058--8014190	43	3.1	43	81	5	135	51	5	7	36	1.53
8014457--8014774	22	14.1	22	68	13	103	44	5	8	41	1.59
8015030--8015118	45	2.0	46	84	2	117	46	6	10	37	1.64
8015030--8015108	22	3.5	22	81	3	95	46	6	10	36	1.63
8015150--8015240	21	4.3	21	73	8	69	43	5	12	38	1.65
8015477--8015546	22	3.5	21	75	13	67	45	5	8	40	1.58
8023130--8023171	19	2.3	18	87	4	57	80	0	4	14	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8024161--8024426	42	6.3	41	78	10	250	26	14	19	39	1.90
8024159--8024391	42	5.5	42	80	10	260	27	14	18	39	1.90
8024161--8024426	127	2.1	126	80	9	301	26	14	19	39	1.90
8024161--8024427	85	3.2	85	88	1	396	26	14	19	39	1.90
8024413--8024566	42	3.6	42	85	5	218	25	12	20	41	1.87
8024420--8024690	45	6.2	45	76	15	235	23	12	19	44	1.84
8024420--8024690	87	3.1	87	82	5	305	23	12	19	44	1.84
8024413--8024589	42	4.1	43	81	9	193	26	12	20	40	1.88
8024441--8024728	45	6.6	43	74	17	157	23	13	19	42	1.87
8024549--8024728	90	2.0	92	81	8	217	23	13	18	45	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100