genome.fa.s168.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  38  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7167716--7167773	26	2.3	26	84	3	73	70	8	0	20	1.13
7168647--7168687	3	13.7	3	100	0	82	31	0	0	68	0.90
7168858--7168960	42	2.4	43	77	1	118	36	14	13	34	1.86
7168932--7169216	80	3.6	80	82	0	318	41	17	13	27	1.88
7168932--7169213	120	2.4	119	80	3	305	41	18	13	26	1.88
7168932--7169217	40	7.2	40	80	0	277	40	17	13	27	1.88
7169315--7169422	34	3.1	34	72	12	94	36	20	16	26	1.94
7169550--7169650	34	3.0	34	86	0	121	34	17	14	32	1.91
7169633--7169736	40	2.6	40	83	3	129	43	16	12	27	1.84
7176904--7176948	23	1.9	23	90	4	72	22	2	4	71	1.15
7176997--7177045	3	16.7	3	95	4	91	65	0	0	34	0.93
7177841--7177876	17	2.1	18	89	5	56	16	0	2	80	0.83
7178125--7178159	15	2.2	16	90	10	54	80	2	0	17	0.84
7182045--7182221	65	2.8	62	87	5	241	33	14	6	45	1.72
7184663--7184705	20	2.2	20	87	8	61	72	0	6	20	1.08
7185091--7185121	13	2.4	13	100	0	62	0	0	6	93	0.35
7184890--7185096	104	2.0	105	94	3	364	35	17	13	32	1.89
7185128--7185707	41	14.1	40	86	4	732	36	22	16	24	1.94
7185128--7185707	123	4.7	123	88	3	810	36	22	16	24	1.94
7186637--7186756	63	1.9	63	89	0	186	31	22	8	37	1.84
7187470--7187509	11	3.6	11	86	10	55	0	15	0	85	0.61
7187470--7187509	21	1.9	21	89	0	62	0	15	0	85	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7187470--7187507	10	3.7	10	92	3	58	0	13	0	86	0.56
7187496--7187534	20	2.0	20	85	10	53	7	20	2	69	1.26
7191955--7192149	58	3.2	58	82	11	255	35	13	9	41	1.78
7194577--7194619	20	2.2	20	83	8	52	72	2	4	20	1.14
7199200--7199242	17	2.7	16	82	10	52	39	0	2	58	1.11
7199342--7199391	17	2.8	17	79	11	55	26	6	0	68	1.13
7199413--7199473	3	19.7	3	88	6	86	67	3	0	29	1.07
7199485--7199524	20	2.0	20	85	5	53	70	15	5	10	1.32
7207088--7207113	13	2.0	13	100	0	52	23	0	0	76	0.78
7208394--7208436	2	21.5	2	90	0	68	44	0	4	51	1.22
7208587--7208739	76	2.0	76	81	7	177	28	11	16	43	1.82
7209012--7209059	23	2.2	23	85	7	64	47	0	0	52	1.00
7209045--7209100	26	2.2	25	81	9	60	37	1	1	58	1.19
7209464--7209518	17	3.2	17	80	12	67	63	1	0	34	1.05
7210193--7210230	2	19.5	2	86	5	51	50	0	0	50	1.00
7210441--7210477	17	2.2	17	95	0	65	86	2	0	10	0.67
7210509--7210561	18	3.0	17	75	8	52	79	3	5	11	1.03
7216831--7216864	13	2.4	14	85	14	52	23	0	11	64	1.26
7217411--7217736	166	2.0	166	97	0	616	34	11	17	36	1.86
7222433--7222495	30	2.2	28	78	15	67	28	1	6	63	1.28
7222441--7222499	30	2.0	30	90	6	93	27	1	5	66	1.22
7222809--7222837	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7223023--7223053	10	3.1	10	95	0	53	58	0	0	41	0.98
7240651--7240715	32	2.0	33	93	3	114	46	13	7	32	1.72
7244622--7244658	2	18.5	2	100	0	74	48	0	0	51	1.00
7245232--7245264	12	2.8	12	90	4	50	42	9	18	30	1.81
7246013--7246076	31	2.1	31	90	0	101	53	10	10	25	1.68
7246008--7246114	31	3.7	29	80	7	83	57	11	8	23	1.61
7253132--7253193	21	2.9	21	88	9	81	50	0	0	50	1.00
7253132--7253193	22	2.8	22	90	9	92	50	0	0	50	1.00
7254735--7254803	11	6.6	10	69	21	52	21	2	4	71	1.17
7254733--7254778	18	2.5	18	83	16	51	21	2	2	73	1.04
7254935--7254983	22	2.1	24	82	17	59	51	2	0	46	1.12
7260314--7260339	11	2.4	11	100	0	52	50	0	0	50	1.00
7260462--7260548	29	3.0	29	81	1	86	27	6	6	58	1.50
7263204--7263231	2	14.0	2	100	0	56	50	0	0	50	1.00
7263431--7263461	3	10.3	3	100	0	62	67	0	0	32	0.91
7269372--7269433	21	2.8	22	76	14	65	41	0	1	56	1.09
7269774--7271933	621	3.5	618	83	3	2479	36	13	12	36	1.84
7272951--7272992	14	3.2	14	77	19	54	76	0	4	19	0.96
7272938--7273005	22	3.1	22	78	17	70	76	1	5	16	1.05
7274428--7274498	30	2.4	30	83	6	83	53	8	7	30	1.58
7278240--7278304	34	1.9	34	90	0	103	35	0	7	56	1.28
7278299--7278334	18	2.0	18	88	0	54	55	5	0	38	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7278422--7278504	33	2.5	33	84	5	105	45	6	2	45	1.41
7280540--7280564	12	2.1	12	100	0	50	28	0	0	72	0.86
7280565--7280607	14	2.9	14	86	13	52	46	0	0	53	1.00
7280578--7280635	15	3.8	15	84	8	73	51	0	0	48	1.00
7283654--7283770	34	3.5	33	81	3	117	42	4	6	46	1.50
7283864--7283899	18	2.0	18	88	0	54	38	0	5	55	1.23
7283894--7283958	34	1.9	34	90	0	103	56	7	0	35	1.28
7287270--7287294	1	25.0	1	100	0	50	0	0	0	100	0.00
7288888--7288913	2	13.0	2	100	0	52	50	0	0	50	1.00
7291351--7291388	18	2.1	18	95	0	67	55	13	5	26	1.59
7296332--7296369	3	12.7	3	100	0	76	68	0	0	31	0.90
7298184--7298238	22	2.6	22	83	11	71	29	0	0	70	0.87
7298198--7298272	33	2.4	32	82	8	91	26	2	2	68	1.17
7299017--7299060	3	15.0	3	86	9	56	31	2	0	65	1.05
7299016--7299053	20	1.9	20	94	0	67	28	2	0	68	1.03
7299009--7299056	23	2.1	23	88	7	71	27	4	0	68	1.07
7299017--7299065	23	2.1	23	81	7	55	34	2	0	63	1.06
7299118--7299475	58	6.2	57	81	9	345	45	5	10	37	1.62
7299118--7299492	115	3.2	115	79	10	410	46	5	10	37	1.61
7299232--7299267	15	2.4	15	85	0	54	38	5	2	52	1.39
7299628--7299671	23	1.9	23	85	0	61	11	11	0	77	1.00
7301897--7301964	5	13.8	5	81	15	72	82	0	13	4	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7301909--7301964	11	5.4	11	87	12	82	80	0	14	5	0.88
7301897--7301965	19	3.5	19	81	14	68	82	0	13	4	0.81
7301900--7301966	11	6.5	11	83	13	72	80	0	14	4	0.86
7301900--7301966	6	11.0	6	72	15	57	80	0	14	4	0.86
7301900--7301966	30	2.2	30	86	2	98	80	0	14	4	0.86
7301899--7301978	36	2.2	37	78	13	94	78	0	16	5	0.91
7302970--7303314	44	7.9	44	85	4	455	22	13	20	42	1.87
7303515--7303564	14	3.8	13	77	12	57	26	2	0	72	0.96
7303520--7303593	35	2.1	35	87	5	105	28	2	1	67	1.12
7303529--7303613	35	2.4	35	84	9	102	29	2	3	64	1.22
7303679--7303704	13	2.0	13	100	0	52	46	7	15	30	1.74
7304279--7304318	3	13.0	3	85	15	55	32	0	2	65	1.06
7304336--7304368	5	6.4	5	93	6	57	18	0	0	81	0.68
7304399--7304685	58	5.0	58	80	5	305	47	6	10	36	1.64
7304384--7304692	115	2.7	114	83	6	363	48	6	9	35	1.63
7304399--7304692	57	5.1	55	76	10	259	47	6	10	35	1.63
7306654--7306707	27	2.0	26	96	3	99	68	1	14	14	1.30
7307110--7307147	18	2.2	18	95	4	69	44	2	5	47	1.39
7313323--7313356	2	17.0	2	100	0	68	50	0	0	50	1.00
7316232--7316261	2	15.0	2	92	0	51	46	0	0	53	1.00
7317145--7317188	19	2.2	20	88	4	63	34	0	15	50	1.45
7319109--7319149	20	2.0	21	85	9	57	48	2	0	48	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7319580--7319611	12	2.7	12	100	0	64	40	9	6	43	1.62
7323958--7323996	3	12.7	3	84	15	53	66	2	2	28	1.18
7327096--7327124	2	14.5	2	100	0	58	48	0	51	0	1.00
7329802--7329839	2	19.5	2	83	5	51	57	0	0	42	0.98
7329802--7329839	10	3.9	10	93	3	60	57	0	0	42	0.98
7330952--7331006	21	2.6	21	97	0	101	12	41	29	16	1.85
7338297--7338335	17	2.4	16	84	16	53	23	28	10	38	1.87
7338787--7338841	26	2.1	26	83	6	67	52	1	3	41	1.29
7339117--7339176	24	2.5	24	72	2	57	70	3	3	23	1.18
7341312--7341380	20	3.3	20	76	15	61	59	0	0	40	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100