genome.fa.s168.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  4  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
596135--596167	10	3.7	9	88	11	50	0	9	0	90	0.44
596905--596931	3	9.0	3	100	0	54	66	0	33	0	0.92
613613--613656	22	2.0	22	82	8	54	52	0	6	40	1.28
613844--613874	16	1.9	16	93	0	53	29	0	9	61	1.28
614164--614225	29	2.1	30	82	8	74	43	1	0	54	1.09
614199--614260	13	5.1	13	71	15	51	33	3	0	62	1.11
614198--614260	24	2.6	25	85	7	85	34	3	0	61	1.12
619653--619682	2	15.0	2	100	0	60	0	50	0	50	1.00
631097--631133	2	18.5	2	88	0	56	2	48	0	48	1.15
634588--634623	17	2.1	18	89	5	56	44	0	25	30	1.54
640197--640238	22	1.9	22	85	9	59	54	4	0	40	1.21
640650--640698	24	2.0	24	88	7	73	59	0	12	28	1.34
641475--641533	15	3.8	15	74	14	57	55	1	0	42	1.09
641478--641564	28	3.1	27	82	8	95	54	1	0	44	1.07
641891--641957	31	2.2	31	86	5	91	43	1	1	53	1.19
641891--641960	30	2.3	30	83	11	88	42	1	1	54	1.18
642409--642486	7	10.6	7	71	17	52	46	0	0	53	1.00
642423--642460	16	2.4	16	82	4	51	47	0	0	52	1.00
642447--642508	22	2.8	22	80	7	54	40	3	0	56	1.15
643370--643405	13	2.7	13	91	4	54	75	0	0	25	0.81
644506--644536	15	2.1	15	93	0	53	64	0	0	35	0.94
646292--646353	23	2.7	23	81	18	60	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
647734--647768	17	2.0	18	88	5	54	5	22	28	42	1.76
648671--648721	20	2.4	21	80	9	59	52	0	0	47	1.00
652065--652282	109	2.0	109	96	0	400	31	18	11	38	1.86
655848--655891	14	3.0	16	87	12	60	61	4	0	34	1.16
655853--655899	15	3.2	14	84	6	58	61	6	2	29	1.32
656124--656157	12	2.9	12	91	4	52	47	8	0	44	1.34
663141--663176	3	12.0	3	93	0	63	33	2	0	63	1.08
678129--678510	188	2.0	188	99	0	755	34	17	15	32	1.91
681074--681121	11	4.3	12	73	26	52	85	0	14	0	0.60
681074--681121	10	4.6	10	82	12	53	85	0	14	0	0.60
681072--681121	23	2.3	20	90	10	73	86	0	14	0	0.58
682366--682654	46	6.4	45	86	3	343	40	10	14	35	1.80
682385--682542	21	6.9	23	71	15	103	41	11	11	36	1.77
682504--682654	67	2.3	64	78	12	151	39	9	17	33	1.81
682366--682620	138	1.8	138	87	5	381	40	11	13	35	1.80
682755--682954	107	1.9	106	86	2	285	37	11	16	34	1.85
683176--683681	81	6.2	82	82	4	547	23	14	15	46	1.82
683176--683689	41	12.5	41	81	4	491	23	14	15	46	1.82
683171--683688	205	2.5	206	81	4	600	23	14	15	46	1.82
683723--683756	6	5.7	6	92	0	50	88	11	0	0	0.52
687139--687209	35	2.0	35	83	0	88	35	15	12	36	1.86
687938--688103	62	2.6	63	78	11	178	32	16	16	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
694870--694906	13	2.8	13	87	0	56	18	0	0	81	0.70
696606--696663	23	2.6	21	74	17	55	70	1	3	24	1.12
703111--703139	15	1.9	15	100	0	58	48	6	6	37	1.57
710237--710273	14	2.6	14	91	4	56	37	18	0	43	1.51
710629--710669	13	3.3	13	86	6	50	87	2	7	2	0.70
710689--710745	19	2.9	19	89	2	78	80	0	7	12	0.89
710833--711073	120	2.0	121	92	0	403	29	27	12	30	1.92
711258--711290	13	2.6	13	95	4	59	63	15	0	21	1.30
711672--711711	10	4.2	9	84	9	53	85	0	15	0	0.61
711667--711711	18	2.4	18	88	3	63	82	0	17	0	0.68
711724--711783	3	20.0	3	100	0	120	66	0	0	33	0.92
712287--713129	89	9.5	89	80	3	752	41	16	23	17	1.89
724936--725339	50	8.0	51	85	5	482	28	12	21	36	1.91
724936--725336	151	2.7	152	87	2	576	28	12	21	36	1.91
725611--725651	17	2.3	19	91	8	68	75	9	4	9	1.17
726604--726650	24	2.0	24	83	8	60	27	0	8	63	1.23
726949--726991	18	2.4	18	84	7	52	60	2	6	30	1.35
734490--734537	19	2.4	19	89	6	69	79	0	6	14	0.92
734501--734543	20	2.2	20	83	8	52	79	0	11	9	0.95
735384--735424	11	4.0	10	84	15	57	85	0	14	0	0.60
735392--735430	9	4.1	9	84	12	51	84	2	12	0	0.72
735384--735430	20	2.3	20	89	7	69	82	2	14	0	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
735429--735463	3	11.7	3	93	0	61	65	0	2	31	1.07
735712--735738	2	13.5	2	100	0	54	0	0	48	51	1.00
740602--740648	23	2.0	23	83	0	58	42	8	10	38	1.70
741687--741966	57	4.9	58	84	7	342	37	12	5	44	1.66
741997--742042	5	8.4	5	86	13	56	78	0	4	17	0.91
741996--742039	6	7.7	6	89	5	56	79	0	4	15	0.89
741999--742048	12	4.4	11	80	14	57	74	0	8	18	1.06
742065--742134	3	23.0	3	90	8	106	68	0	1	30	0.98
742529--742560	11	2.9	11	90	0	55	43	9	9	37	1.69
742829--742911	34	2.5	33	84	9	107	66	2	2	28	1.17
742868--742922	13	3.9	14	80	15	53	70	3	0	25	1.03
753386--753447	28	2.2	29	80	13	76	74	12	0	12	1.08
754586--754700	43	2.6	45	72	10	105	43	16	9	30	1.80
754940--754976	17	2.2	17	90	4	58	37	21	10	29	1.88
754931--755020	33	2.6	33	78	5	81	41	17	8	32	1.81
755046--755100	17	3.2	17	84	0	65	40	12	12	34	1.82
754984--755137	84	1.8	84	87	0	227	32	14	12	40	1.84
755499--755672	92	1.9	92	86	0	249	36	19	8	36	1.81
755534--755729	44	4.3	44	73	15	141	36	16	9	37	1.81
755600--755798	109	1.8	109	87	0	299	38	13	10	38	1.78
755779--755888	21	5.1	21	77	10	114	41	18	6	33	1.75
755780--755887	45	2.5	45	81	4	132	42	17	6	33	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
755862--755991	65	2.0	65	86	5	183	42	19	5	33	1.74
755932--755959	14	2.0	14	100	0	56	35	21	7	35	1.81
755937--755988	14	4.1	13	80	12	63	38	17	1	42	1.60
755947--756007	24	2.5	25	89	7	99	37	14	3	44	1.62
756483--756640	79	2.0	79	91	0	253	32	25	6	34	1.83
757240--757527	58	4.9	58	85	7	377	36	13	6	42	1.72
757249--757527	117	2.4	118	87	5	397	37	13	6	41	1.72
757550--757605	10	5.7	10	78	19	64	73	0	0	26	0.84
757550--757605	5	10.4	5	84	7	58	73	0	0	26	0.84
758445--758503	20	3.1	19	84	13	77	62	0	5	32	1.17
758445--758569	9	13.9	9	67	21	50	63	0	4	31	1.21
758445--758557	50	2.1	56	84	11	148	61	0	5	31	1.24
758555--758605	17	2.9	18	80	11	61	78	5	0	15	0.93
758552--758606	24	2.4	23	77	17	60	78	5	0	16	0.93
758552--758603	7	7.0	7	81	12	50	78	5	0	15	0.92
758760--758790	12	2.7	12	95	5	55	0	3	6	90	0.55
758829--759046	41	5.1	45	83	8	224	42	18	11	27	1.85
758832--759098	83	3.2	83	81	4	277	43	18	11	25	1.84
758852--759104	41	6.0	41	85	4	247	41	20	11	26	1.86
760104--760148	16	3.0	16	84	12	60	4	11	2	82	0.91
760112--760168	21	2.6	22	86	8	80	7	14	0	78	0.94
760104--760167	29	2.2	30	83	8	78	4	14	1	79	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
760080--760164	19	4.6	18	74	16	68	5	16	1	76	1.04
765020--765445	162	2.6	162	98	0	827	40	11	7	41	1.68
765462--765493	17	1.9	17	93	6	57	15	3	0	81	0.82
770537--770576	2	20.0	2	100	0	80	50	0	0	50	1.00
773729--773757	15	1.9	15	100	0	58	48	6	6	37	1.57
777547--777589	14	3.1	14	82	0	50	55	0	0	44	0.99
781189--781254	25	2.6	25	79	9	71	10	16	1	71	1.21
781226--781259	15	2.3	15	89	0	50	5	14	0	79	0.91
781260--781300	12	3.1	14	79	13	50	82	0	12	4	0.81
781275--781300	12	2.2	12	100	0	52	84	0	15	0	0.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100