genome.fa.s168.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  55  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10120857--10120960	41	2.6	41	84	4	131	34	14	17	33	1.90
10122660--10122715	15	3.5	15	80	9	58	7	7	1	83	0.86
10122661--10122717	23	2.5	22	83	11	69	8	5	1	84	0.84
10122660--10122717	16	3.7	15	78	15	55	8	6	1	82	0.90
10127547--10127571	5	5.0	5	100	0	50	80	0	0	20	0.72
10129295--10129325	16	1.9	16	93	0	53	19	0	35	45	1.51
10129340--10129390	16	3.4	16	76	10	54	17	0	31	50	1.46
10130833--10130889	28	2.0	29	86	6	82	22	0	1	75	0.90
10133563--10133592	10	3.1	10	95	4	53	63	0	0	36	0.95
10135643--10135696	22	2.4	23	84	6	83	55	0	5	38	1.23
10135923--10135965	2	22.0	2	90	4	70	48	0	2	48	1.14
10136540--10136602	21	3.2	19	76	21	58	65	0	3	31	1.09
10136563--10136612	21	2.4	22	80	12	61	70	2	0	28	0.99
10139682--10139721	17	2.4	17	86	0	53	70	5	0	25	1.08
10139799--10140347	221	2.5	216	76	9	531	50	5	11	32	1.60
10141544--10141615	29	2.6	28	91	6	112	34	2	0	62	1.10
10141686--10141779	29	3.2	28	82	7	89	59	5	3	31	1.35
10145251--10145302	25	2.0	25	82	10	61	28	3	3	63	1.30
10145406--10145471	33	1.9	36	82	14	86	50	3	0	46	1.16
10155193--10155238	14	3.1	15	84	12	60	6	15	0	78	0.95
10161802--10161869	30	2.2	32	82	17	92	19	26	27	26	1.99
10161802--10161872	31	2.4	30	86	13	94	21	26	26	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10161936--10161980	19	2.4	19	92	0	72	24	31	22	22	1.99
10162200--10162232	5	6.6	5	92	0	57	21	42	36	0	1.53
10162317--10162918	157	3.8	157	97	1	1089	29	14	18	38	1.90
10168204--10168233	15	2.1	14	93	6	51	50	6	36	6	1.55
10173121--10173217	8	11.6	8	76	14	54	75	0	13	11	1.05
10173122--10173217	43	2.3	43	85	8	144	75	0	13	11	1.06
10173122--10173222	25	4.1	24	81	14	109	73	0	14	11	1.10
10174234--10174571	42	8.1	41	91	4	468	22	18	24	34	1.96
10174573--10174609	1	37.0	1	88	0	56	94	5	0	0	0.30
10174722--10174761	20	2.0	20	90	0	62	20	30	27	22	1.98
10175053--10175086	11	2.9	12	86	8	52	20	0	0	79	0.73
10175402--10175470	31	2.2	31	87	10	97	18	26	26	28	1.98
10175536--10175580	19	2.4	19	92	0	72	24	31	22	22	1.99
10175800--10175854	5	10.6	5	84	7	74	20	40	36	3	1.70
10175862--10175903	15	2.9	15	86	6	52	9	0	4	85	0.72
10175862--10175886	1	25.0	1	100	0	50	0	0	0	100	0.00
10175933--10176524	152	3.8	152	94	2	986	29	14	18	38	1.90
10180685--10180976	60	4.9	59	87	7	344	32	13	8	45	1.73
10180685--10180965	119	2.4	118	88	7	408	33	13	7	44	1.73
10181045--10181118	27	2.8	26	78	11	80	79	4	2	13	0.98
10181045--10181118	26	2.8	25	80	15	78	79	4	2	13	0.98
10181439--10181476	20	1.9	20	94	0	67	23	18	26	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10181537--10181600	31	2.1	31	87	0	92	31	25	15	28	1.96
10182384--10182416	7	4.9	7	88	3	50	15	0	6	78	0.93
10182398--10182481	1	84.0	1	73	0	51	5	0	9	84	0.77
10182391--10182481	24	3.7	23	77	18	87	6	0	9	83	0.81
10182391--10182479	42	2.1	42	85	8	119	6	0	10	83	0.82
10182385--10182482	14	6.9	14	75	12	74	7	0	10	82	0.84
10182405--10182478	9	8.6	9	85	14	86	5	0	10	83	0.79
10182400--10182480	10	7.9	10	81	12	76	6	0	9	83	0.79
10182489--10183307	41	20.0	41	90	5	1232	37	22	16	22	1.94
10182489--10183307	81	10.0	80	93	4	1166	37	22	16	22	1.94
10184494--10184559	8	8.6	8	81	11	61	7	13	0	78	0.94
10184490--10184559	15	4.6	16	77	12	69	7	15	0	77	0.98
10184502--10184559	28	2.1	28	87	6	82	6	13	0	79	0.93
10184494--10184562	36	1.9	35	80	8	77	8	14	0	76	1.00
10188385--10188713	119	2.8	119	90	4	481	33	13	8	44	1.75
10188385--10188743	178	2.0	181	87	7	518	32	12	8	46	1.72
10188385--10188733	59	5.9	59	86	8	460	32	13	8	45	1.73
10188802--10188870	27	2.7	25	82	17	72	79	2	2	14	0.96
10189194--10189238	20	2.3	20	80	3	56	26	20	24	28	1.99
10189296--10189361	31	2.1	32	85	2	89	30	22	21	25	1.99
10190109--10190486	49	7.8	48	80	6	334	30	13	18	38	1.89
10190109--10190486	194	1.9	194	80	5	442	30	13	18	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10190109--10190490	98	3.9	97	79	3	385	30	13	18	37	1.89
10191588--10191647	21	3.0	21	78	7	54	30	0	1	68	0.99
10191695--10191744	9	4.9	10	79	18	50	68	2	2	28	1.12
10191698--10191750	12	4.2	12	83	7	61	67	1	1	28	1.11
10191698--10191750	25	2.1	25	85	0	70	67	1	1	28	1.11
10193298--10193323	2	13.0	2	100	0	52	50	0	0	50	1.00
10197423--10197447	8	3.1	8	100	0	50	12	24	12	52	1.72
10208331--10208372	17	2.4	17	84	4	57	23	7	0	69	1.13
10208793--10208855	6	10.5	6	80	11	67	19	4	0	76	0.96
10208793--10208845	17	3.1	16	86	10	70	16	5	0	77	0.96
10208875--10209275	60	6.8	58	80	11	413	40	7	13	37	1.73
10209130--10209262	66	2.1	62	90	5	203	41	7	16	34	1.77
10211637--10211672	3	11.7	3	94	5	63	33	0	0	66	0.92
10212154--10212224	31	2.3	31	85	0	88	26	22	23	26	2.00
10212285--10212322	20	1.9	20	94	0	67	31	26	18	23	1.97
10212635--10212659	1	25.0	1	100	0	50	0	0	0	100	0.00
10212643--10212689	25	1.9	25	82	4	60	6	6	6	80	1.01
10212789--10213187	59	6.7	58	84	10	506	43	7	14	33	1.74
10212779--10213187	120	3.4	120	90	5	618	44	8	14	33	1.74
10215436--10215529	11	9.2	11	77	18	64	77	0	14	7	0.97
10215445--10215538	8	10.8	8	73	18	64	78	0	13	7	0.95
10215436--10215539	19	5.2	20	72	23	87	77	0	14	7	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10216701--10216728	11	2.5	11	100	0	56	35	7	21	35	1.81
10216255--10217016	385	2.0	374	95	2	1353	32	13	20	33	1.91
10217615--10217905	41	7.0	41	82	6	293	22	15	21	40	1.91
10217611--10217905	84	3.6	82	82	5	326	22	15	21	40	1.91
10217659--10217954	41	7.0	45	81	8	166	20	15	22	41	1.90
10217895--10218247	98	3.6	97	85	9	482	36	13	16	32	1.88
10218070--10218247	96	1.9	95	89	3	277	39	13	15	31	1.86
10217976--10218247	104	2.7	105	86	7	334	37	13	16	32	1.87
10218214--10218375	42	3.8	42	83	7	193	22	17	20	38	1.93
10218195--10218379	41	4.3	43	82	8	200	22	16	21	40	1.91
10218208--10218371	86	2.0	82	82	4	202	22	17	20	40	1.91
10218398--10218442	24	1.9	24	90	4	74	82	8	6	2	0.93
10218635--10218727	22	3.9	23	77	12	82	26	5	1	66	1.20
10218663--10218783	17	7.1	18	74	14	73	23	7	1	66	1.26
10219147--10219195	13	3.8	13	78	8	55	16	6	0	77	0.96
10219215--10219651	59	7.6	58	84	5	514	41	7	15	35	1.74
10219219--10219651	114	3.8	114	85	5	543	41	7	15	35	1.75
10219219--10219651	173	2.5	169	88	5	645	41	7	15	35	1.75
10228162--10228213	25	2.1	25	96	0	95	32	7	9	50	1.64
10241836--10241925	44	2.0	45	91	2	146	35	16	11	36	1.84
10244082--10244139	21	2.8	21	76	5	55	74	8	0	17	1.06
10244645--10244684	20	2.0	20	85	0	53	50	17	7	25	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10257355--10257379	2	12.5	2	100	0	50	48	0	0	52	1.00
10261573--10261618	21	2.2	21	84	0	56	56	0	4	39	1.19
10262675--10262717	16	2.7	16	89	7	61	48	0	2	48	1.14
10262750--10262776	6	4.5	6	100	0	54	18	0	0	81	0.69
10262766--10262817	27	1.9	27	84	7	70	34	3	3	57	1.35
10264298--10264367	32	2.2	32	86	0	95	18	18	24	38	1.93
10266016--10266072	30	1.9	30	92	0	96	52	0	3	43	1.18
10266025--10266136	27	4.1	27	76	13	104	56	1	4	37	1.30
10267792--10269915	709	3.0	706	85	2	2794	33	21	9	36	1.86
10274099--10274133	18	1.9	18	88	11	54	57	5	0	37	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100