genome.fa.s168.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  59  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10801660--10801824	90	1.8	90	82	0	213	38	20	13	26	1.90
10801957--10802169	56	3.8	56	76	1	212	34	19	12	33	1.89
10801956--10802169	112	1.9	112	87	0	311	34	20	12	33	1.89
10801866--10802203	112	3.0	110	76	5	308	33	20	13	32	1.91
10802370--10802416	19	2.5	19	76	13	51	40	19	17	23	1.91
10804375--10804433	22	2.7	21	84	7	64	67	13	0	18	1.22
10805013--10805094	43	1.9	43	94	0	146	47	21	3	26	1.67
10806534--10806571	18	2.1	18	90	0	58	50	10	13	26	1.73
10815262--10815352	41	2.2	41	96	0	164	40	18	7	32	1.79
10815406--10815470	25	2.6	25	82	0	85	35	32	7	24	1.84
10816734--10817592	356	2.4	356	82	3	989	36	12	15	36	1.85
10825468--10825545	29	2.8	27	77	11	77	39	1	10	48	1.45
10825762--10825835	21	3.7	21	71	26	70	66	1	1	31	1.09
10825770--10825830	12	4.9	12	75	13	61	68	0	1	29	0.99
10826013--10826058	11	4.0	12	76	21	53	43	0	2	54	1.12
10826013--10826055	23	1.9	22	86	13	61	41	0	2	55	1.12
10826012--10826080	34	2.0	34	88	5	104	42	0	1	56	1.08
10826012--10826075	15	3.9	16	72	14	51	42	0	1	56	1.09
10827678--10827712	11	3.1	11	92	8	61	25	2	0	71	1.00
10829467--10829544	19	3.8	20	69	14	61	50	1	1	47	1.17
10829437--10829613	29	6.2	29	74	9	123	53	2	1	42	1.23
10829445--10829621	11	17.2	11	65	18	69	54	2	1	41	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10829742--10830004	30	8.4	31	69	20	83	53	1	2	41	1.26
10829856--10829964	29	3.8	28	85	3	146	51	0	0	46	1.13
10829846--10829964	57	2.1	58	88	4	179	52	1	0	45	1.16
10829903--10830198	21	14.4	21	69	16	63	49	2	3	44	1.31
10829930--10829997	11	5.9	11	74	16	57	54	1	2	41	1.24
10829830--10829966	30	4.7	30	77	13	135	52	1	0	45	1.15
10829887--10830005	44	2.6	46	78	11	127	52	0	2	43	1.20
10829835--10830005	93	1.8	94	85	6	240	52	1	2	43	1.24
10830039--10830098	21	2.9	19	88	9	66	55	1	3	40	1.27
10830043--10830198	11	15.2	10	69	12	84	51	1	3	44	1.25
10830193--10830247	25	2.1	28	83	10	71	45	0	5	49	1.25
10835531--10835560	15	2.1	15	93	6	53	40	50	0	10	1.36
10835553--10835627	12	6.0	12	75	14	62	49	38	2	9	1.49
10835704--10835786	26	3.3	26	78	8	82	46	33	1	18	1.56
10835744--10835855	7	17.4	7	71	15	64	47	33	0	17	1.54
10835746--10835855	13	8.2	13	70	17	73	47	34	0	17	1.54
10835780--10835837	20	3.0	20	74	2	55	43	36	1	18	1.61
10835808--10835855	12	3.9	12	81	8	53	45	31	0	22	1.53
10835868--10835920	19	2.8	19	79	0	61	49	35	0	15	1.45
10836428--10836478	23	2.1	25	82	10	61	58	1	3	35	1.28
10837591--10837664	8	8.6	9	86	7	84	79	0	14	5	0.90
10838638--10838904	41	6.6	41	86	5	371	24	12	20	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10838643--10838947	41	7.4	41	83	5	249	24	12	20	42	1.87
10839959--10840019	4	15.2	4	84	6	79	19	0	4	75	0.98
10839968--10840028	8	7.3	9	87	10	60	21	0	3	75	0.94
10839968--10840027	12	4.8	13	80	10	72	21	0	3	75	0.95
10840222--10840263	22	1.9	22	85	0	57	73	4	2	19	1.12
10840217--10840262	14	3.2	15	85	14	62	76	6	2	15	1.09
10840611--10840728	53	2.2	52	86	1	155	49	8	14	27	1.72
10842889--10842924	18	2.0	18	100	0	72	11	16	5	66	1.40
10843950--10843992	17	2.5	17	84	0	59	48	34	6	9	1.62
10844812--10844848	7	5.1	7	96	3	65	16	2	0	81	0.81
10844965--10845020	20	2.7	21	81	10	71	69	0	3	26	1.04
10844984--10845022	15	2.7	15	88	4	53	69	0	2	28	1.02
10845162--10845198	17	2.1	18	90	5	58	78	0	5	16	0.93
10845162--10845213	13	3.9	14	77	22	51	78	0	5	15	0.92
10853043--10853084	21	2.0	21	85	4	57	30	9	7	52	1.61
10853392--10853454	33	1.9	33	96	0	117	47	20	12	19	1.81
10854067--10854268	85	2.4	85	84	6	266	29	15	17	37	1.91
10854039--10854335	85	3.5	83	76	9	255	27	16	18	38	1.91
10854992--10855016	13	1.9	13	100	0	50	80	20	0	0	0.72
10855496--10855555	25	2.4	25	78	10	61	71	10	6	11	1.30
10856370--10856394	13	1.9	13	100	0	50	12	0	0	88	0.53
10856513--10856576	3	22.7	3	81	12	66	71	1	0	26	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10860728--10860763	6	6.2	6	96	3	65	69	0	13	16	1.19
10860731--10860787	6	9.3	6	90	3	60	75	0	8	15	1.04
10860728--10860784	18	3.1	18	85	9	71	71	0	10	17	1.12
10860749--10860787	13	3.1	13	85	7	53	79	0	5	15	0.90
10865211--10865238	9	3.1	9	100	0	56	35	0	53	10	1.36
10872606--10872656	23	2.2	23	83	16	70	78	5	3	11	1.06
10879654--10879684	7	4.4	7	95	0	53	22	0	19	58	1.40
10885419--10885467	16	2.9	17	81	6	55	79	2	12	6	0.99
10885423--10885466	15	2.9	15	82	3	52	81	2	11	4	0.92
10886503--10886601	34	3.1	34	78	16	138	22	9	17	51	1.73
10886534--10886589	28	2.0	28	96	0	103	23	10	14	51	1.73
10886542--10886603	28	2.2	27	83	11	72	20	8	16	54	1.67
10894136--10894170	18	2.1	17	89	10	54	62	2	11	22	1.41
10897608--10897667	25	2.5	24	83	5	77	25	25	3	46	1.68
10902727--10902950	110	2.0	111	85	5	299	46	17	10	25	1.80
10908918--10908951	15	2.3	15	90	5	52	26	2	2	67	1.19
10909086--10909112	3	9.0	3	100	0	54	66	0	0	33	0.92
10909824--10909922	34	3.1	34	78	16	138	22	9	17	51	1.73
10909855--10909910	28	2.0	28	96	0	103	23	10	14	51	1.73
10909863--10909924	28	2.2	27	83	11	72	20	8	16	54	1.67
10916857--10916884	3	9.3	3	100	0	56	35	0	0	64	0.94
10917460--10917495	18	2.0	18	89	10	56	61	2	13	22	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10917614--10917649	3	12.0	3	100	0	72	33	0	0	66	0.92
10917791--10917849	28	2.1	28	84	6	75	77	3	6	11	1.07
10918162--10918257	36	2.6	36	78	6	95	38	0	1	60	1.04
10918191--10918258	20	3.2	20	75	18	66	36	0	0	63	0.95
10918563--10918587	12	2.1	12	100	0	50	76	0	0	24	0.80
10920022--10920059	18	2.1	18	90	9	60	23	5	0	71	1.07
10920021--10920061	17	2.4	18	84	8	59	26	4	0	68	1.10
10921237--10921270	17	2.0	17	88	0	50	41	2	0	55	1.15
10921506--10921530	2	12.5	2	100	0	50	48	0	0	52	1.00
10922348--10922469	9	13.6	9	76	0	100	30	29	4	35	1.79
10922348--10922469	6	20.3	6	78	0	100	30	29	4	35	1.79
10923252--10923309	20	2.9	20	80	10	82	48	10	5	36	1.60
10923410--10923515	20	5.0	20	76	12	95	55	8	5	30	1.53
10923424--10923512	23	4.0	22	74	10	74	58	8	5	26	1.51
10923415--10923514	43	2.3	43	87	0	137	56	9	6	29	1.54
10923643--10923688	20	2.2	20	92	3	74	58	10	0	30	1.32
10923409--10923644	98	2.4	102	82	3	275	53	9	6	30	1.58
10923622--10923718	21	4.5	21	75	13	90	55	8	2	34	1.41
10924669--10924929	85	3.1	85	81	6	312	38	19	13	28	1.90
10924680--10924929	42	5.9	43	83	5	294	38	19	14	28	1.91
10929368--10929412	16	2.8	16	93	6	74	37	6	24	31	1.81
10931477--10931515	19	2.1	19	85	0	51	58	7	10	23	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10932588--10932673	20	4.1	20	75	13	75	50	13	5	30	1.66
10932963--10933051	22	4.0	23	75	10	96	58	10	3	28	1.47
10932960--10933054	43	2.2	43	92	0	154	56	9	3	30	1.47
10932962--10933054	23	4.3	21	76	14	100	56	9	3	30	1.47
10932901--10933102	98	2.1	96	86	1	278	52	11	4	30	1.57
10932998--10933101	55	1.9	55	93	0	181	53	10	5	29	1.58
10933001--10933133	55	2.4	55	85	6	164	54	12	4	27	1.57
10933111--10933220	36	3.2	35	68	20	97	54	14	5	25	1.61
10933065--10933220	68	2.3	70	87	5	230	54	14	5	25	1.61
10934893--10934930	19	2.0	20	94	5	69	63	7	7	21	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100