genome.fa.s168.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  31  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5737068--5737111	16	2.9	15	80	6	52	56	4	31	6	1.46
5741982--5742038	8	6.9	8	83	16	64	78	0	10	10	0.95
5741983--5742024	20	2.2	19	95	4	75	78	0	11	9	0.96
5741983--5742044	28	2.2	28	85	5	81	82	0	8	9	0.85
5742011--5742049	14	2.7	14	88	4	51	84	0	5	10	0.76
5743058--5743484	40	10.1	41	86	9	481	23	18	23	34	1.96
5743058--5743201	41	3.6	39	90	5	220	25	18	21	34	1.96
5743662--5743712	5	9.6	5	78	18	50	19	0	1	78	0.85
5743662--5743712	21	2.4	22	93	3	86	19	0	1	78	0.85
5743691--5743929	4	61.2	4	68	14	83	26	3	3	66	1.25
5743780--5743852	29	2.4	29	84	9	83	27	4	4	64	1.30
5743809--5743884	17	4.4	17	73	16	68	32	1	2	63	1.17
5743860--5743947	22	4.3	22	76	15	82	23	3	2	70	1.14
5743860--5743947	41	2.3	39	84	9	117	23	3	2	70	1.14
5743860--5743942	19	4.2	20	79	13	82	24	3	2	69	1.16
5743854--5743959	11	9.8	10	70	22	56	24	2	1	70	1.10
5743952--5743995	18	2.4	18	88	3	61	13	6	6	72	1.25
5743951--5743996	19	2.4	18	82	7	56	13	6	6	73	1.22
5744851--5744898	4	12.0	4	90	0	78	20	0	4	75	0.97
5744853--5744898	16	2.9	16	100	0	92	19	0	4	76	0.96
5744938--5744980	15	2.7	15	82	10	59	11	6	4	76	1.13
5744920--5744982	22	2.9	21	81	11	65	12	7	3	76	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5744933--5744993	30	1.9	31	87	9	88	13	6	3	77	1.09
5744989--5745304	58	5.3	58	77	13	288	46	6	10	37	1.64
5745224--5745261	16	2.4	16	82	4	51	44	5	0	50	1.24
5745199--5745407	102	2.0	102	88	3	314	43	6	11	39	1.66
5745241--5745334	44	2.2	43	87	9	131	42	7	11	38	1.70
5745292--5745682	60	6.7	58	81	10	404	45	5	10	37	1.63
5745300--5745683	58	6.6	58	81	9	383	44	5	10	38	1.64
5745300--5745684	175	2.2	174	85	7	521	44	5	10	38	1.64
5748450--5748499	23	2.2	24	78	10	59	38	0	12	50	1.40
5748457--5748521	23	3.0	22	82	6	69	40	1	9	49	1.44
5749413--5749437	13	1.9	13	100	0	50	40	24	4	32	1.73
5753936--5753983	25	2.0	25	84	8	64	37	6	0	56	1.25
5753926--5753988	25	2.4	27	75	20	62	38	6	1	53	1.36
5765485--5765558	35	2.1	35	89	0	112	41	9	5	43	1.60
5773537--5773612	25	3.2	24	71	15	68	35	0	3	60	1.15
5773749--5773796	19	2.5	20	73	10	55	56	0	0	43	0.99
5774585--5774627	14	3.0	14	86	6	59	41	0	2	55	1.12
5774583--5774635	15	3.5	15	84	7	63	45	1	1	50	1.23
5787639--5787684	12	4.1	11	81	18	51	2	19	2	76	1.00
5790413--5790439	14	1.9	14	100	0	54	51	0	0	48	1.00
5790464--5790498	15	2.3	15	90	0	61	54	0	0	45	0.99
5791031--5791077	14	3.0	16	75	15	53	48	2	0	48	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5795821--5795865	23	2.0	23	86	8	65	37	0	6	55	1.26
5801150--5801246	49	2.0	49	95	0	176	42	12	16	28	1.84
5810716--5810744	2	14.5	2	100	0	58	48	51	0	0	1.00
5811020--5811069	24	2.1	24	100	0	100	28	32	12	28	1.92
5820685--5820734	20	2.3	22	83	10	59	52	12	8	28	1.66
5825504--5825548	22	2.0	22	100	0	90	31	31	0	37	1.58
5834133--5834303	90	1.9	90	93	0	297	19	30	9	39	1.85
5839900--5839928	2	14.5	2	100	0	58	51	0	0	48	1.00
5840250--5840308	30	2.0	30	86	6	84	42	0	3	54	1.17
5841278--5841318	21	2.0	21	90	9	66	31	0	0	68	0.90
5841279--5841324	21	2.2	21	84	7	58	34	0	0	65	0.93
5841312--5841389	23	3.6	21	73	19	61	47	1	1	50	1.17
5841288--5841380	23	4.0	22	74	21	59	41	1	1	55	1.14
5841359--5841400	14	3.0	14	86	6	50	54	0	0	45	0.99
5848504--5848538	3	11.7	3	87	0	52	28	0	2	68	1.04
5856929--5856962	16	2.1	16	94	0	59	38	17	20	23	1.93
5862954--5863020	4	16.5	4	75	9	64	68	4	4	22	1.26
5863957--5864124	20	8.4	20	67	19	66	42	16	10	30	1.81
5864123--5864212	19	4.8	18	81	8	83	44	10	14	31	1.78
5864358--5864463	16	6.6	16	74	11	83	45	8	6	39	1.61
5864358--5864424	32	2.1	33	86	8	93	47	5	5	40	1.52
5864706--5865126	109	3.9	109	87	2	551	37	14	10	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5864706--5865126	217	1.9	218	85	2	578	37	14	10	38	1.79
5865107--5865226	21	5.4	21	71	20	91	42	13	5	39	1.66
5865130--5865217	46	1.9	45	86	2	122	44	11	3	40	1.57
5865175--5865220	24	1.9	24	90	0	74	39	19	4	36	1.72
5865249--5865301	24	2.2	24	86	6	72	33	15	5	45	1.69
5866461--5866503	23	1.9	23	90	4	70	13	16	0	69	1.19
5866459--5866508	22	2.3	21	80	10	64	12	14	0	74	1.09
5869334--5869364	12	2.6	12	100	0	62	58	6	9	25	1.54
5870598--5870871	120	2.3	121	84	6	351	36	8	10	45	1.68
5871036--5871106	4	17.5	4	77	8	63	70	5	4	19	1.24
5880577--5880639	23	2.7	22	69	9	54	41	3	7	47	1.48
5884434--5884470	15	2.4	16	86	8	51	40	5	2	51	1.39
5885023--5885071	19	2.5	20	81	18	66	59	0	0	40	0.98
5885423--5885461	16	2.2	19	82	17	57	46	2	0	51	1.14
5885426--5885467	18	2.4	18	88	7	61	42	2	0	54	1.13
5885423--5885467	8	5.2	9	80	17	51	42	2	0	55	1.12
5888775--5888889	30	3.9	29	85	10	135	52	0	6	40	1.35
5889357--5889386	2	15.5	2	93	6	53	50	0	0	50	1.00
5889989--5890033	21	2.2	21	84	4	56	53	0	2	44	1.13
5890008--5890077	31	2.2	31	89	2	104	52	0	0	47	1.00
5890091--5890255	87	1.9	86	83	3	215	34	13	13	37	1.85
5892629--5892702	31	2.4	32	79	4	80	28	4	0	67	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5893690--5894742	531	2.0	532	98	0	2029	37	8	13	39	1.75
5895255--5895324	4	17.2	4	79	2	59	17	2	8	71	1.23
5895259--5895320	16	3.8	16	82	4	79	16	3	9	70	1.26
5895733--5895769	19	1.9	19	94	0	65	51	24	0	24	1.49
5897010--5897053	20	2.3	19	88	4	61	25	18	9	47	1.77
5896977--5897096	61	2.0	61	89	0	186	33	17	10	39	1.83
5896977--5897115	61	2.3	61	85	5	165	33	17	10	38	1.84
5900036--5900090	15	3.8	14	76	7	56	20	0	23	56	1.42
5900567--5900613	3	15.7	3	100	0	94	31	0	0	68	0.90
5903149--5903202	17	3.2	16	84	12	65	81	0	9	9	0.88
5903157--5903196	16	2.4	16	91	4	62	87	0	5	7	0.66
5904649--5904724	22	3.5	22	75	10	75	32	17	17	32	1.93
5906293--5906371	4	19.5	4	76	7	79	21	2	6	69	1.23
5906543--5906803	121	2.2	120	78	10	257	44	9	10	35	1.71
5906736--5906780	19	2.4	18	82	13	56	53	0	4	42	1.21
5908012--5908063	21	2.5	21	76	11	63	42	0	1	55	1.10
5910628--5910705	37	2.1	37	90	4	122	51	6	3	38	1.46
5912790--5912826	18	2.1	18	100	0	74	37	16	5	40	1.71
5915824--5915895	30	2.3	31	81	11	85	51	0	0	48	1.00
5916259--5916321	31	2.1	31	82	14	78	55	0	1	42	1.09
5916259--5916321	30	2.1	30	82	14	76	55	0	1	42	1.09
5922755--5922792	15	2.6	15	91	4	60	55	0	2	42	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5922660--5922873	108	2.0	106	80	4	243	45	7	2	44	1.45
5926119--5926172	28	2.0	26	82	13	65	40	9	5	44	1.60
5926704--5926738	16	2.1	16	89	5	52	51	0	0	48	1.00
5926767--5926859	31	3.0	31	87	0	123	51	3	1	44	1.24
5927002--5927028	14	1.9	14	100	0	54	59	0	0	40	0.98
5928466--5928493	2	14.0	2	100	0	56	50	0	0	50	1.00
5941466--5941531	33	2.0	33	96	0	123	50	12	4	33	1.60
5944787--5944832	24	1.9	24	100	0	92	47	23	6	21	1.74
5945538--5945562	2	12.5	2	100	0	50	52	0	0	48	1.00
5950263--5950302	21	1.9	21	84	0	53	65	0	2	32	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100