genome.fa.s168.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  63  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11504866--11504895	15	1.9	16	93	6	53	70	6	0	23	1.11
11507099--11507159	26	2.5	23	75	14	68	54	16	6	22	1.65
11511576--11511613	16	2.4	16	86	8	51	42	2	5	50	1.39
11513204--11513242	1	39.0	1	89	0	60	0	0	5	94	0.29
11513201--11513242	17	2.6	16	92	7	68	0	0	7	92	0.37
11513204--11513249	23	2.0	23	86	0	65	2	0	8	89	0.57
11515131--11515167	18	2.1	17	90	5	56	32	10	0	56	1.34
11515530--11515595	29	2.3	28	84	7	80	62	0	1	36	1.05
11515543--11515607	29	2.5	25	79	20	71	63	1	3	32	1.19
11516420--11516460	12	3.4	12	83	9	57	65	0	0	34	0.93
11520318--11520398	25	3.3	25	77	14	80	80	6	9	3	1.01
11520321--11520397	40	1.9	39	89	7	120	79	6	10	3	1.04
11520954--11521041	12	6.6	14	77	13	64	38	2	3	55	1.29
11520956--11521014	25	2.2	28	85	8	79	40	3	5	50	1.41
11520994--11521042	3	16.3	3	91	0	80	34	2	0	63	1.06
11522065--11522104	19	2.1	19	95	0	71	60	7	0	32	1.25
11523349--11523400	25	2.1	25	82	3	61	21	3	21	53	1.61
11525767--11525826	31	1.9	31	82	0	75	30	1	16	51	1.54
11529915--11529940	2	13.0	2	100	0	52	50	0	0	50	1.00
11530270--11530321	22	2.4	21	90	9	79	51	0	0	48	1.00
11530269--11530319	20	2.5	21	85	14	72	52	0	0	47	1.00
11533502--11533559	18	3.1	18	85	9	80	50	5	1	43	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11533512--11533940	10	43.6	10	67	14	94	57	6	2	33	1.37
11533503--11533570	19	3.8	18	81	9	77	47	4	1	47	1.31
11533508--11533584	37	2.1	37	85	7	102	49	3	1	45	1.28
11533550--11533642	29	3.2	28	75	3	87	58	6	0	35	1.24
11533567--11533687	19	6.3	19	69	14	61	62	5	2	28	1.31
11533501--11533750	20	12.8	20	69	10	108	56	6	2	35	1.35
11533789--11533860	37	2.0	36	86	2	99	65	0	1	33	1.02
11533836--11533870	17	2.1	17	94	0	61	65	2	0	31	1.07
11533821--11533875	28	2.0	28	88	0	83	63	3	0	32	1.12
11533781--11533870	37	2.4	37	75	7	92	63	2	1	33	1.14
11533898--11533937	21	1.9	21	94	0	71	57	7	5	30	1.48
11534105--11534164	20	3.0	21	85	9	72	53	1	8	36	1.41
11534090--11534150	21	3.0	20	79	18	63	54	1	8	36	1.40
11534510--11534754	10	25.1	9	67	18	82	39	2	6	51	1.40
11534628--11534755	39	3.2	41	76	11	117	35	2	8	53	1.45
11534570--11534902	10	33.8	10	66	13	120	39	2	6	52	1.38
11537583--11537612	14	2.1	14	93	0	51	40	0	0	60	0.97
11541178--11541235	30	2.0	29	86	10	82	62	6	3	27	1.37
11543437--11543518	7	11.3	7	69	17	51	76	2	2	18	1.00
11543432--11543526	21	4.3	22	72	13	70	76	2	3	17	1.01
11543458--11543526	22	3.0	22	82	12	86	78	2	2	15	1.00
11543420--11543518	20	5.2	18	71	22	60	75	2	3	19	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11543432--11543518	6	14.5	6	69	16	56	77	2	2	18	0.99
11544313--11544502	3	65.3	3	82	10	225	63	4	1	31	1.22
11556051--11556088	17	2.2	17	90	9	60	76	2	0	21	0.91
11556051--11556100	26	1.9	26	84	8	66	74	4	2	20	1.08
11556032--11556113	41	2.0	40	81	11	96	69	4	2	23	1.20
11562216--11562242	2	13.5	2	100	0	54	51	0	0	48	1.00
11562574--11562625	22	2.4	21	90	9	79	51	0	0	48	1.00
11562573--11562623	20	2.5	21	85	14	72	52	0	0	47	1.00
11565808--11566236	10	43.8	10	67	15	107	56	5	1	35	1.33
11565809--11565888	37	2.1	37	81	6	99	52	1	1	45	1.16
11565921--11565975	19	2.9	19	81	7	58	60	5	5	29	1.42
11566132--11566166	17	2.1	17	94	0	61	65	2	0	31	1.07
11566150--11566236	11	7.8	11	70	20	65	57	5	1	35	1.30
11566036--11566166	37	3.4	37	76	8	102	58	3	1	36	1.26
11566117--11566171	28	2.0	28	92	0	92	65	1	0	32	1.03
11566077--11566188	38	3.0	37	78	6	127	61	2	0	34	1.16
11565808--11566236	20	21.9	20	67	14	148	56	5	1	35	1.33
11566387--11566442	20	2.7	21	78	21	64	57	1	8	32	1.40
11566401--11566464	19	3.3	20	87	10	89	50	1	6	42	1.37
11566798--11566844	20	2.3	21	79	20	55	44	0	2	53	1.12
11566811--11566852	18	2.2	20	87	8	61	42	0	4	52	1.22
11566944--11567087	10	14.4	10	66	15	66	33	1	11	54	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11566836--11567052	19	11.1	19	72	12	118	36	1	8	52	1.42
11566942--11567053	39	2.8	39	75	15	106	33	1	10	53	1.46
11566865--11567073	19	10.6	19	71	12	129	37	1	7	52	1.41
11566865--11567185	20	15.9	20	67	17	89	39	1	6	52	1.37
11567126--11567185	10	5.9	10	78	9	59	41	3	1	53	1.27
11569876--11569905	14	2.1	14	93	0	51	40	0	0	60	0.97
11573465--11573522	30	2.0	29	86	10	82	62	6	3	27	1.37
11575705--11575799	28	3.4	27	76	12	86	74	1	3	21	1.01
11575724--11575803	15	5.6	14	68	17	58	77	1	2	18	0.95
11575749--11575811	21	2.9	22	83	9	76	77	1	3	17	0.97
11575719--11575803	36	2.5	33	80	14	91	77	1	2	18	0.94
11575719--11575803	7	13.5	6	70	25	52	77	1	2	18	0.94
11576298--11576351	25	2.3	23	78	12	63	33	27	3	35	1.75
11576309--11576366	25	2.3	25	93	0	98	22	32	5	39	1.76
11576622--11576685	3	21.3	3	100	0	128	67	0	0	32	0.91
11588547--11588584	17	2.2	17	90	9	60	76	2	0	21	0.91
11588547--11588667	26	4.7	26	71	16	76	74	4	2	19	1.10
11588528--11588609	41	2.0	40	81	11	96	69	4	2	23	1.20
11588572--11588626	28	1.9	29	85	10	78	70	5	1	21	1.16
11589413--11589609	3	67.3	3	73	10	158	61	3	5	29	1.32
11589413--11589596	26	7.2	25	72	16	114	61	3	4	29	1.32
11589476--11589535	5	11.6	5	82	12	52	61	1	1	35	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11593045--11593069	2	12.5	2	100	0	50	52	0	0	48	1.00
11593728--11593765	13	2.7	14	84	12	51	55	5	2	36	1.37
11593753--11593838	24	3.5	25	76	12	90	55	9	4	30	1.52
11597161--11597204	15	2.9	15	83	6	52	11	2	4	81	0.92
11597495--11597546	21	2.5	21	81	9	70	40	7	0	51	1.30
11604231--11604298	35	1.9	36	85	8	95	14	7	4	73	1.21
11605807--11605846	12	3.3	12	85	0	53	30	25	7	37	1.83
11606329--11606356	14	2.0	14	100	0	56	28	7	7	57	1.52
11607157--11607203	3	15.7	3	100	0	94	68	0	0	31	0.90
11609139--11609168	15	2.0	15	93	0	51	30	6	13	50	1.67
11609149--11609231	40	2.1	39	84	2	103	30	10	10	48	1.72
11609191--11609354	22	7.3	22	70	8	87	35	6	12	45	1.69
11609204--11609277	24	3.2	24	75	7	80	36	8	9	45	1.66
11609192--11609299	46	2.3	46	84	4	137	36	8	11	44	1.70
11609631--11609674	17	2.6	17	89	3	63	34	18	11	36	1.86
11609868--11609906	16	2.4	16	91	4	60	25	15	17	41	1.89
11609925--11609992	17	4.0	17	76	14	68	33	10	17	38	1.84
11610032--11610106	33	2.3	33	74	6	80	28	16	12	44	1.83
11610100--11610155	17	3.3	17	77	7	60	30	12	21	35	1.90
11610257--11610294	18	2.1	19	85	5	51	39	7	15	36	1.77
11610350--11610390	18	2.3	18	80	19	50	34	9	17	39	1.82
11611454--11611557	6	16.5	6	72	16	59	19	4	1	74	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11611449--11611499	25	2.0	25	85	7	68	11	3	3	80	0.98
11611443--11611513	31	2.3	30	82	4	79	14	2	5	77	1.06
11612603--11612652	3	16.3	3	95	4	91	66	0	0	34	0.92
11613315--11613351	15	2.2	18	86	13	53	43	0	0	56	0.99
11614986--11615016	3	10.3	3	100	0	62	32	0	0	67	0.91
11621737--11621770	10	3.4	10	87	0	50	11	8	0	79	0.94
11622908--11622961	26	2.1	26	82	0	63	14	1	11	72	1.21
11623210--11623354	49	3.0	49	84	1	202	40	22	11	26	1.87
11630557--11630601	22	2.0	22	100	0	90	31	24	31	13	1.93
11635934--11635968	18	2.0	17	94	5	61	17	0	8	74	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100