genome.fa.s168.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  2  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81133--84013	360	8.1	358	73	9	2010	42	10	7	39	1.67
82878--83559	343	2.0	341	79	4	737	42	10	7	39	1.69
83223--84017	179	4.4	176	75	10	495	41	10	7	41	1.66
81133--83725	524	4.9	517	75	9	1671	42	10	7	39	1.68
83865--84129	144	1.8	144	86	1	379	44	7	7	39	1.63
84750--84790	18	2.2	20	91	8	68	36	0	2	60	1.10
85757--85842	5	16.4	5	77	15	77	15	5	1	77	1.01
85756--85834	6	13.7	6	76	12	60	15	6	0	78	0.94
85869--86389	58	8.7	57	81	11	582	43	8	12	35	1.73
85869--86389	119	4.4	115	85	9	586	43	8	12	35	1.73
85867--86391	179	2.9	179	88	6	737	43	8	12	35	1.74
97759--97864	8	13.5	8	77	11	94	77	0	11	10	1.04
97775--97835	11	5.5	11	77	9	61	81	0	6	11	0.85
97759--97858	32	3.2	31	80	7	112	78	1	10	11	1.03
97823--97880	20	2.7	21	84	13	64	74	0	18	6	1.04
97832--97870	14	2.7	14	80	4	51	74	0	20	5	1.01
98881--99011	41	3.1	41	90	2	190	23	17	23	35	1.95
99202--99266	16	4.3	15	70	18	55	20	1	3	75	1.02
99319--99367	20	2.7	18	82	17	57	28	0	2	69	1.00
99905--99943	19	2.0	20	90	5	62	41	17	15	25	1.89
100283--100450	5	31.4	5	68	23	69	16	2	4	76	1.07
100283--100453	11	15.1	11	69	13	57	16	2	4	76	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100384--100450	27	2.5	28	80	7	84	13	4	2	79	1.01
100383--100442	6	10.7	6	74	13	56	13	5	1	80	0.96
100412--100464	22	2.4	22	81	15	65	15	7	1	75	1.11
100478--100877	119	3.3	119	91	5	614	43	8	13	34	1.74
100477--100877	58	6.7	57	85	9	509	43	8	12	34	1.74
101369--103278	181	10.7	179	77	7	1451	41	10	7	40	1.67
101395--103175	719	2.5	705	79	8	1795	42	9	7	40	1.66
102997--103519	278	1.9	279	80	2	613	39	9	8	42	1.68
102828--103737	459	2.0	458	78	5	960	41	9	8	40	1.67
103287--104019	181	4.1	180	76	6	461	42	9	8	39	1.68
104242--104848	332	1.8	332	90	0	982	24	20	26	27	1.99
104953--105059	53	2.0	53	98	0	205	43	6	10	39	1.65
105073--105106	17	2.0	17	100	0	68	35	29	0	35	1.58
107042--107111	34	2.1	34	100	0	140	52	2	22	21	1.60
110605--110680	37	2.0	38	92	2	127	27	9	31	31	1.88
112453--115170	181	15.2	181	72	7	771	42	9	7	40	1.66
112447--113757	180	7.3	181	77	4	1047	42	10	7	39	1.67
112447--115217	362	7.7	356	75	7	1830	42	9	7	40	1.66
113602--113918	161	2.0	160	81	4	379	42	11	6	39	1.66
113773--115212	181	8.0	179	78	6	1207	42	9	7	41	1.65
114325--114360	16	2.1	17	90	10	56	41	16	2	38	1.63
113880--115212	543	2.5	537	81	6	1478	42	9	7	41	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115280--115317	10	3.8	10	89	0	58	0	13	0	86	0.56
115280--115326	23	2.0	23	83	0	58	4	12	2	80	0.94
121764--121802	21	1.9	21	89	5	62	20	35	28	15	1.93
121843--121874	9	3.4	9	95	4	55	0	18	0	81	0.70
121879--122072	4	47.8	4	70	16	82	26	1	4	68	1.17
121885--122057	22	8.0	21	70	19	63	27	1	3	68	1.13
122967--123029	27	2.3	28	84	10	78	25	0	4	69	1.07
123024--123105	22	4.0	20	72	19	62	13	10	2	73	1.20
123109--123749	58	10.9	58	86	5	889	45	7	12	34	1.69
123116--123749	120	5.4	116	88	5	898	45	7	12	34	1.70
123109--123749	178	3.6	177	90	4	976	45	7	12	34	1.69
123781--123814	6	5.7	6	96	0	59	14	0	11	73	1.10
134180--134221	13	2.9	15	82	13	52	83	0	4	11	0.79
134181--134213	7	4.9	7	85	7	50	84	0	3	12	0.72
135248--135620	41	9.0	41	86	4	482	25	17	21	35	1.95
135629--135684	9	6.5	8	79	20	60	87	10	0	1	0.62
135629--135690	10	6.2	10	85	7	72	85	11	0	3	0.71
135632--135684	19	2.9	18	91	5	88	86	11	0	1	0.64
135631--135690	19	3.1	19	90	7	86	85	11	0	3	0.72
135879--135950	3	23.7	3	83	13	94	29	0	2	68	1.04
137009--137043	4	8.5	4	87	6	52	20	0	2	77	0.90
137003--137043	13	3.2	13	82	6	57	19	0	2	78	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137004--137036	17	1.9	17	93	0	57	15	0	3	81	0.80
137065--137106	22	1.9	22	85	9	59	14	11	2	71	1.24
137110--137630	58	8.9	57	86	6	706	44	6	12	35	1.69
137117--137630	119	4.4	116	88	4	750	44	6	13	35	1.70
137102--137628	177	3.0	174	89	4	773	44	6	12	36	1.68
144174--144200	11	2.5	11	100	0	54	92	0	7	0	0.38
145038--145516	49	9.8	49	77	7	456	27	14	18	38	1.90
145038--145420	196	1.9	198	84	3	504	27	13	19	39	1.90
145345--145549	94	2.2	93	85	2	295	28	17	16	37	1.91
145745--145779	9	3.8	9	88	7	52	0	14	0	85	0.59
147410--150211	181	15.7	180	75	8	1870	41	7	8	41	1.65
147701--150049	887	2.6	891	76	7	2077	41	8	8	42	1.65
150986--151041	21	2.7	21	88	2	87	32	26	19	21	1.97
150986--151038	20	2.6	20	90	3	79	33	22	20	22	1.97
151030--151218	74	2.5	74	81	3	236	34	20	20	24	1.96
152120--152444	157	2.1	157	81	4	379	44	5	9	40	1.61
153800--153832	17	1.9	17	88	11	50	75	3	0	21	0.93
153856--153912	19	2.9	19	78	12	62	50	8	7	33	1.60
154061--154099	14	2.9	14	85	14	55	76	10	0	12	1.01
154063--154105	20	2.2	20	83	8	52	76	11	0	11	1.02
155618--155680	17	3.6	17	75	12	56	41	14	15	28	1.87
155920--156295	45	8.4	44	77	5	362	39	15	9	35	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156009--156124	22	5.2	22	63	10	74	41	14	7	36	1.75
156007--156305	134	2.2	136	82	4	356	39	15	8	36	1.78
155920--156295	89	4.2	89	84	3	436	39	15	9	35	1.80
157260--157297	20	1.9	19	89	5	58	10	2	0	86	0.66
163687--163739	28	1.9	27	92	3	88	43	0	5	50	1.25
163687--163753	28	2.4	28	85	2	82	41	1	7	49	1.40
163806--163865	29	2.1	29	84	6	79	53	5	0	41	1.23
163815--163873	29	2.0	29	90	0	91	52	8	0	38	1.32
166426--166479	18	3.0	18	80	0	63	33	0	35	31	1.58
168687--168719	16	2.1	16	100	0	66	42	18	0	39	1.50
171403--171485	27	3.0	28	82	5	114	33	20	8	37	1.83
173359--173391	16	2.1	16	100	0	66	42	18	0	39	1.50
187011--187104	19	5.2	18	68	21	63	14	1	38	45	1.53
187001--187067	33	2.0	33	85	0	89	13	0	41	44	1.43
186997--187129	26	4.8	26	69	23	85	15	0	37	45	1.52
188508--188533	1	26.0	1	100	0	52	100	0	0	0	0.00
188937--189288	145	2.5	139	81	6	375	42	14	13	30	1.83
188909--189377	143	3.3	144	76	9	352	42	13	12	31	1.81
192141--192235	50	1.9	50	84	0	127	37	18	14	28	1.91
192850--192881	17	1.9	17	93	6	57	68	6	6	18	1.32
193245--193294	25	2.0	25	84	0	64	38	4	4	54	1.38
193716--193753	3	12.7	3	100	0	76	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
193808--193836	2	14.5	2	100	0	58	51	0	48	0	1.00
198844--198892	24	2.0	24	100	0	98	22	8	24	44	1.79
198847--198900	24	2.2	24	90	6	83	24	9	22	44	1.81
205247--205304	19	3.1	19	76	0	53	34	1	0	63	1.04
208316--208391	34	2.3	33	83	2	89	46	1	6	46	1.37
208316--208360	17	2.6	17	75	0	54	48	2	6	42	1.41
209657--209693	2	18.5	2	100	0	74	48	0	0	51	1.00
213620--213687	21	3.3	20	75	17	68	35	2	2	58	1.28
214292--214352	20	3.2	20	69	21	51	27	4	1	65	1.22
216306--216358	24	2.2	25	77	16	58	22	0	7	69	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100