genome.fa.s168.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  60  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10935443--10935482	16	2.4	17	83	4	55	65	5	2	27	1.27
10936266--10936293	2	14.0	2	100	0	56	50	0	0	50	1.00
10936592--10936888	146	2.0	147	96	0	542	24	18	19	37	1.94
10936865--10936898	6	5.7	6	92	0	50	0	2	8	88	0.62
10938813--10938881	23	3.0	23	77	10	77	17	2	30	49	1.61
10938800--10938890	47	1.9	47	82	4	112	19	4	28	47	1.69
10938813--10938901	15	5.9	15	74	6	63	16	4	31	47	1.67
10938800--10938887	23	3.8	23	72	8	70	19	3	28	48	1.65
10941315--10941421	35	3.1	35	75	0	106	45	10	21	22	1.81
10941554--10941715	36	4.6	35	68	12	100	53	14	14	16	1.73
10941521--10941698	69	2.5	70	77	8	166	51	15	15	17	1.76
10941920--10942074	35	4.5	35	77	2	116	51	13	17	17	1.76
10942075--10942142	35	1.9	35	84	0	91	48	8	17	25	1.76
10943202--10943329	23	5.6	23	77	1	105	27	17	21	33	1.96
10943202--10943260	22	2.6	22	83	2	64	25	18	23	32	1.97
10945575--10945607	15	2.2	15	94	0	57	6	6	9	78	1.08
10949617--10949785	8	21.5	8	72	8	60	20	2	26	50	1.61
10949617--10949737	16	7.7	16	71	3	75	22	2	26	48	1.63
10949605--10949672	23	2.9	23	75	2	73	25	4	25	45	1.72
10949606--10949751	47	3.1	46	80	7	134	22	3	26	47	1.67
10949663--10949783	32	3.8	31	74	9	84	18	2	27	52	1.58
10949734--10949775	16	2.6	16	92	0	75	11	0	26	61	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10949764--10949794	16	1.9	16	93	0	53	22	6	22	48	1.73
10949732--10949791	24	2.5	24	89	5	86	15	1	28	55	1.50
10950288--10950413	62	2.0	62	87	7	184	39	15	0	45	1.46
10952195--10952235	10	4.3	10	84	6	50	60	4	2	31	1.30
10953223--10953279	28	2.1	26	83	6	69	35	0	0	64	0.93
10954220--10954264	12	3.5	12	80	14	54	37	4	0	57	1.19
10954220--10954275	27	2.1	26	90	3	85	33	5	0	60	1.19
10954219--10954284	27	2.4	27	75	14	71	33	4	0	62	1.16
10955767--10955843	18	4.3	18	70	11	59	25	0	3	70	1.05
10955757--10955844	36	2.7	32	78	16	92	27	1	3	68	1.13
10955767--10955844	12	6.5	12	72	16	63	25	0	3	70	1.04
10955933--10955985	24	2.2	25	82	3	63	50	0	1	47	1.12
10957741--10957780	21	1.9	21	89	0	62	60	0	2	37	1.11
10957779--10957834	17	2.9	18	80	17	60	51	0	1	46	1.11
10957732--10957821	48	2.0	47	80	12	107	52	1	2	44	1.20
10957987--10958065	25	3.5	21	73	19	70	43	5	0	51	1.23
10958014--10958077	29	2.2	28	83	8	74	43	4	0	51	1.22
10960641--10960666	2	13.0	2	100	0	52	50	0	0	50	1.00
10964136--10964220	16	5.5	15	70	6	71	14	4	31	49	1.63
10964225--10964258	16	2.1	16	88	0	50	26	8	20	44	1.81
10964563--10964600	20	2.0	20	94	5	69	28	0	0	71	0.87
10965493--10965527	14	2.5	14	90	0	52	8	2	20	68	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10966630--10966761	35	3.8	36	84	6	164	51	12	16	19	1.75
10966540--10966756	69	3.1	69	76	4	186	49	11	17	20	1.78
10966625--10966783	70	2.3	69	80	1	183	52	11	15	20	1.74
10966627--10966778	35	4.4	35	80	8	148	51	11	16	19	1.75
10967090--10967170	35	2.3	35	76	4	83	53	12	16	18	1.73
10967124--10967280	69	2.3	70	81	1	181	54	14	15	16	1.72
10967179--10967379	70	2.9	71	77	8	189	51	14	16	17	1.77
10967725--10967773	26	1.9	26	83	4	64	12	6	4	77	1.09
10967913--10968208	155	1.9	156	96	0	549	39	20	9	30	1.84
10968666--10968738	23	3.2	23	80	1	76	31	15	20	32	1.93
10968962--10969004	16	2.6	16	85	10	52	0	11	9	79	0.95
10969465--10969509	17	2.6	17	89	0	63	35	13	22	28	1.92
10969700--10969725	13	2.0	13	100	0	52	23	7	7	61	1.49
10971038--10971076	19	2.1	19	85	0	51	0	5	7	87	0.68
10973313--10973371	31	1.9	31	92	0	100	35	23	16	23	1.95
10975169--10975224	15	3.7	15	73	17	53	25	1	23	50	1.59
10975141--10975224	23	3.6	23	79	9	73	22	3	26	47	1.67
10975127--10975224	8	12.6	8	72	8	60	21	3	26	48	1.64
10975175--10975294	31	3.8	32	77	12	117	21	4	25	49	1.67
10975186--10975294	47	2.3	47	77	0	128	22	4	25	47	1.70
10975141--10975295	23	6.6	22	70	12	62	21	4	26	47	1.69
10975586--10975619	17	1.9	18	94	5	61	26	0	0	73	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10980711--10980767	28	2.1	26	83	6	69	35	0	0	64	0.93
10982527--10982582	25	2.2	25	83	0	67	26	3	0	69	1.04
10982547--10982582	12	3.0	12	92	8	56	27	0	0	72	0.85
10982548--10982611	17	3.7	18	78	12	62	29	1	0	68	0.99
10982727--10982770	20	2.3	19	88	4	70	50	0	0	50	1.00
10982714--10982768	20	2.7	20	78	16	67	45	0	0	54	0.99
10983985--10984031	25	1.9	25	83	12	62	42	0	0	57	0.98
10984201--10984237	17	2.1	18	90	5	58	51	0	2	45	1.15
10984203--10984249	21	2.3	21	88	3	69	55	0	2	42	1.12
10984431--10984494	29	2.2	28	83	8	74	43	3	0	53	1.16
10986541--10986591	21	2.4	21	83	0	66	41	7	0	50	1.31
10987573--10987623	17	2.8	18	77	17	52	41	5	9	43	1.62
10992507--10992551	16	2.8	17	83	6	58	33	22	2	42	1.66
10994817--10994870	25	2.2	25	90	6	83	61	0	5	33	1.19
10994809--10994870	24	2.5	24	84	7	81	61	1	4	32	1.27
11002882--11002922	18	2.3	18	91	8	66	73	0	7	19	1.07
11004299--11004340	14	3.1	14	79	3	50	42	4	9	42	1.58
11009333--11009417	8	10.8	8	80	12	70	80	0	8	11	0.92
11009350--11009424	8	8.2	9	78	21	77	85	0	5	9	0.74
11009350--11009424	18	4.1	18	78	21	77	85	0	5	9	0.74
11009374--11009424	1	51.0	1	82	0	57	90	0	1	7	0.53
11010714--11010820	44	2.4	45	80	13	130	35	10	18	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11011118--11011168	19	2.8	18	76	5	57	33	7	17	41	1.79
11011160--11011191	15	2.1	15	94	0	55	28	6	18	46	1.73
11011275--11011623	43	8.2	43	76	8	239	25	13	17	43	1.86
11011366--11011592	83	2.7	84	80	7	203	24	12	18	44	1.85
11011395--11011592	87	2.3	84	81	9	217	25	13	18	42	1.87
11011984--11012265	43	6.7	39	72	16	165	24	12	17	45	1.83
11011977--11012408	44	10.0	44	77	7	370	24	12	18	45	1.84
11011977--11012341	83	4.3	83	81	7	301	24	12	16	45	1.83
11011969--11012339	87	4.3	86	78	10	318	25	12	16	45	1.82
11030357--11030412	25	2.2	25	100	0	112	62	0	12	25	1.30
11030367--11030424	25	2.3	25	87	3	80	70	0	13	15	1.17
11030391--11030426	19	1.9	19	88	5	56	72	0	13	13	1.13
11035708--11035758	25	2.0	25	92	7	86	33	13	3	49	1.61
11035986--11036086	47	2.1	48	80	10	109	38	4	1	54	1.33
11037285--11037311	2	13.5	2	100	0	54	51	0	0	48	1.00
11040657--11040692	15	2.2	16	90	9	56	19	0	8	72	1.10
11042434--11042901	49	9.7	48	75	10	339	42	18	12	26	1.85
11042434--11042900	98	4.8	97	73	10	375	42	18	12	26	1.85
11042414--11042848	142	3.0	140	79	6	455	42	17	12	27	1.85
11042434--11042908	142	3.3	144	78	7	387	42	18	12	27	1.85
11043560--11043593	15	2.3	15	95	5	61	8	0	5	85	0.75
11044775--11044835	26	2.4	24	76	10	59	18	11	14	55	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11047905--11047951	24	2.0	23	84	12	60	38	8	8	44	1.65
11054587--11054622	15	2.2	16	90	9	56	19	0	8	72	1.10
11059003--11059035	15	2.2	15	100	0	66	39	12	6	42	1.67
11060445--11060498	20	2.7	19	81	15	65	53	1	0	44	1.11
11060844--11060884	18	2.4	17	84	8	55	24	2	0	73	0.96
11061006--11061039	16	2.1	16	88	5	50	50	0	0	50	1.00
11062439--11062511	30	2.4	29	77	6	74	46	2	6	43	1.44
11062864--11062901	20	1.9	20	84	10	51	15	10	0	73	1.09
11064691--11064739	14	3.5	14	81	10	64	73	0	10	16	1.09
11066300--11066342	22	2.0	22	86	4	61	41	0	0	58	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100