genome.fa.s168.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  96  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16739868--16740887	476	2.1	473	80	5	1110	24	25	20	30	1.99
16742317--16742810	250	2.0	252	90	0	785	27	27	18	25	1.98
16742825--16743074	110	2.3	110	82	1	295	22	28	20	28	1.99
16743076--16743128	23	2.3	23	93	0	97	18	22	28	30	1.98
16751109--16751156	21	2.3	21	100	0	96	22	27	18	31	1.97
16757150--16757254	52	2.0	52	92	0	174	23	32	15	28	1.95
16764727--16764778	3	17.7	3	92	4	88	1	0	30	67	1.02
16764943--16764979	18	2.1	19	90	10	60	18	5	0	75	0.99
16765039--16765085	15	3.3	14	78	21	53	23	2	4	70	1.16
16765340--16765401	33	1.9	33	83	9	83	66	11	1	20	1.32
16765230--16765429	110	1.8	110	92	1	337	64	9	5	22	1.42
16766742--16766882	19	7.6	18	69	18	76	46	32	2	18	1.61
16766773--16766826	11	4.5	11	80	15	54	46	29	1	22	1.62
16766733--16766882	6	24.3	6	71	18	89	46	32	2	19	1.61
16766771--16766879	25	4.5	24	79	11	105	46	32	1	19	1.60
16766754--16766882	67	1.9	66	84	6	170	46	32	1	19	1.59
16766884--16766932	25	2.0	25	87	0	71	48	26	2	22	1.61
16768417--16768458	22	1.9	22	90	9	68	30	7	26	35	1.83
16773863--16773910	22	2.1	24	84	7	64	54	10	2	33	1.46
16776609--16776675	34	2.0	33	88	2	98	23	2	17	55	1.56
16776853--16777018	62	2.7	62	87	1	228	36	13	13	36	1.84
16784149--16784331	62	3.0	62	82	3	199	36	7	8	48	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16796016--16796067	4	12.8	4	88	11	79	25	1	1	71	1.07
16796591--16796632	20	2.1	20	82	8	50	45	2	11	40	1.54
16802691--16802725	10	3.4	10	92	4	52	80	2	11	5	1.00
16808895--16809023	61	2.1	61	92	2	215	41	12	13	31	1.82
16812665--16812711	8	5.9	8	92	0	76	57	0	2	40	1.11
16812721--16812780	13	4.8	13	69	22	56	46	1	0	51	1.10
16814301--16814328	3	9.3	3	100	0	56	67	0	0	32	0.91
16816647--16816673	2	13.5	2	100	0	54	51	0	0	48	1.00
16819554--16819597	22	2.0	22	95	0	79	34	13	11	40	1.81
16823506--16823549	22	2.0	22	95	0	79	31	11	13	43	1.80
16825520--16825605	36	2.4	36	84	5	120	40	10	12	36	1.78
16831788--16832306	262	2.0	264	85	5	721	44	16	12	26	1.83
16841915--16842261	174	2.0	176	95	1	626	45	16	10	26	1.80
16843356--16843419	33	1.9	33	93	0	110	54	20	10	14	1.69
16849820--16849896	30	2.6	30	82	0	91	37	16	5	40	1.71
16866043--16866178	71	1.9	72	83	5	179	37	9	4	48	1.56
16866272--16866459	74	2.6	70	75	10	180	32	6	10	50	1.63
16867694--16867737	21	2.0	22	82	4	54	43	0	0	56	0.99
16877480--16877510	15	2.1	15	93	0	53	16	12	25	45	1.83
16881286--16881533	94	2.6	93	76	10	254	39	8	6	45	1.60
16881528--16881569	3	14.0	3	94	0	75	30	0	2	66	1.04
16893584--16893647	26	2.4	26	72	12	76	25	6	1	67	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16902572--16902612	8	4.9	8	82	11	55	12	12	0	75	1.05
16906708--16906734	12	2.2	12	100	0	54	25	0	7	66	1.17
16909732--16909765	17	2.0	17	100	0	68	41	11	5	41	1.66
16911488--16911538	19	2.6	21	75	12	63	27	0	7	64	1.21
16914892--16914969	27	2.9	27	88	0	102	23	6	35	34	1.80
16916841--16916891	25	2.0	25	92	0	84	37	9	21	31	1.86
16917744--16917816	28	2.7	26	77	12	67	68	1	1	28	1.06
16917768--16917809	18	2.4	18	88	7	61	73	0	0	26	0.83
16931088--16931142	23	2.4	23	87	0	83	56	18	9	16	1.66
16933078--16933424	72	4.9	69	72	11	229	45	6	10	37	1.65
16933432--16933460	11	2.5	12	94	5	51	72	0	3	24	1.00
16935935--16935998	22	2.7	22	73	20	58	48	0	4	46	1.23
16965784--16965817	11	3.2	11	83	8	52	61	0	29	8	1.26
16972818--16972870	25	2.1	25	92	0	88	26	15	20	37	1.92
16981909--16981939	2	15.5	2	100	0	62	48	0	0	51	1.00
16982282--16982333	21	2.5	20	75	9	59	38	7	13	40	1.73
16983737--16983791	21	2.6	21	97	0	101	49	16	7	27	1.72
16988993--16989034	22	1.9	22	90	0	66	42	9	11	35	1.74
16991603--16991630	14	2.0	14	100	0	56	42	7	7	42	1.59
16995008--16995046	20	1.9	20	84	5	51	25	5	10	58	1.51
16995383--16995421	17	2.4	17	86	4	53	58	0	5	35	1.20
16996341--16996384	3	14.7	3	95	0	79	2	29	0	68	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16997705--16997934	119	1.9	119	91	0	379	23	26	11	38	1.89
16999097--16999277	93	1.9	93	90	1	290	28	19	17	33	1.95
17002056--17002094	20	2.0	20	90	5	62	25	0	5	69	1.09
17002254--17002294	17	2.4	17	84	15	50	78	0	17	4	0.93
17002284--17002317	17	1.9	18	94	5	61	79	0	5	14	0.91
17002309--17002361	3	17.3	3	96	3	97	66	0	0	33	0.92
17005543--17005583	19	2.1	20	86	4	57	26	9	19	43	1.82
17005659--17005729	27	2.6	27	78	8	90	21	12	30	35	1.91
17005720--17005756	19	1.9	19	100	0	74	16	16	29	37	1.90
17006022--17006336	85	3.7	85	81	2	328	23	13	21	40	1.90
17006412--17006952	85	6.4	85	75	6	308	24	13	20	41	1.88
17006413--17006723	170	1.8	170	80	5	378	25	12	19	42	1.87
17006956--17007227	85	3.2	85	75	5	235	22	13	20	42	1.88
17008780--17008824	19	2.4	19	85	3	56	73	8	0	17	1.08
17008791--17008831	19	2.2	19	86	4	57	78	4	0	17	0.93
17008809--17008856	19	2.6	18	80	3	51	83	4	2	10	0.87
17013832--17013948	61	1.9	61	81	11	141	34	26	10	29	1.89
17014632--17015427	414	1.9	410	83	5	1023	39	16	6	37	1.74
17015953--17016162	113	1.9	112	81	6	253	38	18	5	37	1.73
17017605--17017653	23	2.1	24	92	3	82	22	4	26	46	1.69
17017786--17018022	20	11.9	19	75	15	128	15	0	35	48	1.45
17017802--17018022	19	11.8	19	76	15	142	15	0	35	48	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17017786--17018022	7	36.7	6	73	20	137	15	0	35	48	1.45
17020873--17020901	14	2.0	15	93	6	51	6	24	0	68	1.13
17021608--17021674	25	2.6	25	83	4	71	38	13	7	40	1.73
17022068--17022136	35	2.0	35	85	0	93	39	28	4	27	1.76
17025854--17025885	12	2.8	11	90	9	55	78	0	3	18	0.89
17025838--17025960	18	6.9	18	69	24	57	73	0	9	16	1.14
17025918--17025959	22	1.9	22	85	9	59	78	0	9	11	0.96
17026307--17026375	20	3.4	20	84	6	86	47	26	5	20	1.72
17026517--17026621	52	2.0	52	86	0	147	25	18	19	37	1.94
17026680--17026732	3	17.7	3	100	0	106	67	0	0	32	0.91
17028229--17028258	2	15.0	2	92	0	51	46	3	0	50	1.18
17030829--17030869	3	13.7	3	94	0	73	31	2	0	65	1.05
17031532--17031563	6	5.3	6	96	0	55	43	18	18	18	1.88
17038487--17038547	31	2.0	29	81	15	70	40	4	11	42	1.62
17039453--17039502	25	2.0	26	88	4	75	60	8	0	32	1.26
17039552--17039587	19	1.9	18	88	5	54	19	16	30	33	1.94
17040076--17040126	21	2.5	20	78	9	59	19	7	9	62	1.50
17040592--17040822	44	5.2	44	81	6	254	40	17	12	29	1.87
17040696--17041024	48	6.9	48	83	9	363	40	21	12	25	1.88
17040734--17041024	147	2.0	146	84	9	380	40	21	12	25	1.88
17045285--17045323	16	2.4	16	87	8	53	56	0	23	20	1.42
17053255--17053294	18	2.1	20	90	9	66	27	0	0	72	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17054402--17054453	16	3.1	16	77	20	52	80	0	19	0	0.71
17054404--17054450	22	2.1	22	88	7	69	78	0	21	0	0.75
17056472--17056512	21	2.0	21	85	4	57	39	29	0	31	1.57
17060615--17060649	11	3.2	11	84	15	54	88	0	8	2	0.61
17060615--17060651	10	3.5	10	89	10	56	86	0	10	2	0.67
17066041--17066083	21	2.0	21	90	0	68	44	6	27	20	1.77
17075268--17075293	11	2.4	11	100	0	52	15	11	26	46	1.80
17079995--17080020	3	8.7	3	100	0	52	30	0	0	69	0.89
17083604--17083768	83	2.0	83	92	0	276	59	7	16	16	1.58
17089975--17090122	61	2.4	62	84	9	189	35	12	5	47	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100