genome.fa.s168.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  6  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
912829--912885	26	2.2	26	84	6	71	50	21	10	17	1.75
912903--913050	57	2.6	56	76	4	152	44	20	14	20	1.86
912843--913116	114	2.4	114	79	4	257	45	18	13	22	1.84
913208--913272	24	2.7	24	83	4	78	38	21	10	29	1.87
913263--913442	98	1.8	97	86	3	263	42	19	10	27	1.84
914768--914801	13	2.6	13	85	0	50	8	0	5	85	0.75
916604--916650	23	2.0	23	84	8	60	40	4	23	31	1.74
919804--919828	2	12.5	2	100	0	50	48	0	0	52	1.00
921054--921114	11	5.6	10	77	12	50	72	1	1	24	1.03
926556--926604	23	2.1	24	84	3	64	28	6	10	55	1.57
927010--927037	2	14.0	2	100	0	56	50	0	0	50	1.00
927793--927823	2	16.0	2	93	6	55	51	0	0	48	1.00
935796--935820	2	12.5	2	100	0	50	52	48	0	0	1.00
941203--941273	18	3.7	19	76	10	56	52	2	0	45	1.15
957393--957512	50	2.4	50	86	5	145	47	5	9	38	1.57
958010--958068	29	2.0	30	83	3	75	44	11	0	44	1.41
968752--968789	18	2.0	20	90	10	62	57	5	0	36	1.21
969106--969152	21	2.3	20	82	13	60	63	2	2	31	1.18
970138--970190	24	2.2	24	82	0	70	28	1	5	64	1.27
974513--974562	21	2.3	21	83	16	59	60	0	0	40	0.97
974882--974948	30	2.2	30	84	5	82	61	4	2	31	1.31
975164--975231	35	1.9	35	82	14	86	63	0	4	32	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
975193--975247	23	2.4	23	75	6	58	69	0	3	27	1.05
976095--976138	6	6.6	7	89	10	58	72	0	0	27	0.85
976095--976138	13	3.3	13	87	3	61	72	0	0	27	0.85
976093--976138	19	2.3	20	85	11	67	71	0	0	28	0.86
976185--976230	23	1.9	23	86	8	65	56	2	0	41	1.11
976335--976366	12	2.4	14	90	10	50	34	3	0	62	1.11
977319--977489	84	2.0	84	97	0	324	37	4	6	52	1.46
984898--984925	6	4.7	6	100	0	56	0	17	64	17	1.30
990587--990647	30	2.0	31	87	9	90	36	4	11	47	1.61
991352--991384	6	5.5	6	89	10	50	84	15	0	0	0.61
991352--991384	11	2.8	12	90	9	50	84	15	0	0	0.61
993830--993870	6	6.8	6	97	0	64	51	9	39	0	1.35
995661--995703	22	2.0	22	86	9	61	34	9	11	44	1.73
996647--996818	85	2.0	85	94	0	299	51	13	19	15	1.76
1000674--1000708	18	1.9	18	94	0	61	62	0	0	37	0.95
1000740--1000799	13	4.9	12	80	8	59	46	3	0	50	1.18
1000735--1000798	31	2.1	30	82	8	76	45	3	0	51	1.17
1001344--1001387	23	1.9	23	81	9	54	70	2	4	22	1.17
1001457--1001481	13	1.9	13	100	0	50	8	0	8	84	0.79
1001930--1002012	27	3.1	27	92	0	121	26	18	40	14	1.88
1005667--1005691	12	2.1	12	100	0	50	24	24	8	44	1.80
1005753--1005800	15	3.2	15	81	0	51	4	37	2	56	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1010185--1010219	17	1.9	19	88	11	56	51	0	0	48	1.00
1010512--1010558	24	2.0	24	84	8	62	27	0	2	70	0.99
1010532--1010581	18	2.9	17	85	5	57	44	0	0	56	0.99
1010547--1010593	19	2.8	17	79	17	53	44	0	0	55	0.99
1010565--1010614	24	2.0	24	85	11	66	46	0	0	54	1.00
1011734--1012707	371	2.6	372	91	0	1563	18	32	23	25	1.97
1013024--1013083	18	3.2	18	73	15	59	56	1	0	41	1.09
1013024--1013075	20	2.7	19	74	11	52	53	0	0	46	1.00
1013098--1013122	2	12.5	2	100	0	50	52	0	0	48	1.00
1015883--1015939	22	2.5	22	83	11	71	42	1	0	56	1.10
1022798--1022863	22	3.2	22	68	27	72	9	16	27	46	1.77
1022785--1022863	39	2.0	39	100	0	158	10	15	27	46	1.77
1023045--1023087	11	3.7	11	85	11	59	27	0	0	72	0.85
1023018--1023108	24	3.7	25	78	12	75	32	1	1	64	1.08
1023740--1023813	34	2.2	33	83	7	87	39	6	5	48	1.53
1024301--1024365	27	2.4	27	81	2	76	33	4	7	53	1.50
1024416--1024464	25	2.0	26	92	8	84	38	2	0	59	1.09
1024474--1024525	25	2.0	26	82	14	63	53	3	7	34	1.48
1025253--1025303	23	2.3	21	77	9	57	25	1	5	66	1.24
1025420--1025468	21	2.2	21	82	7	62	55	2	0	42	1.11
1025452--1025503	22	2.2	24	80	16	65	69	3	0	26	1.06
1025467--1025508	19	2.2	20	86	4	59	69	2	0	28	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1025506--1025637	16	7.3	19	63	20	52	56	2	0	41	1.12
1025430--1025647	107	2.0	107	98	1	420	56	2	0	40	1.13
1025573--1025621	25	2.1	25	85	11	68	67	2	0	30	1.02
1026204--1026284	6	13.7	6	74	17	71	51	1	0	46	1.08
1026208--1026302	11	9.0	10	70	21	52	52	1	0	46	1.07
1026208--1026302	5	18.0	5	72	18	52	52	1	0	46	1.07
1026219--1026274	14	4.0	14	73	15	53	44	1	0	53	1.11
1026551--1026785	119	2.0	120	96	0	436	36	10	11	42	1.75
1027322--1027396	31	2.4	33	80	13	86	49	2	0	48	1.15
1028725--1028792	33	2.0	35	82	5	86	52	0	2	44	1.16
1029081--1029149	33	2.2	30	82	7	75	40	5	2	50	1.41
1030273--1030392	62	1.9	63	81	11	149	33	13	10	43	1.77
1030259--1030426	62	2.7	63	73	14	143	31	14	13	40	1.85
1030817--1030946	62	2.1	63	79	12	144	27	11	13	47	1.77
1031130--1031449	63	5.1	62	72	12	188	31	10	13	45	1.76
1031255--1031397	62	2.3	62	78	9	148	30	9	13	46	1.75
1031149--1031499	126	2.8	126	79	6	349	30	10	13	45	1.77
1032992--1033042	25	2.0	25	84	0	66	45	0	1	52	1.12
1042932--1042992	16	3.8	16	84	2	77	67	0	3	29	1.07
1042950--1043001	8	6.1	8	74	12	50	73	0	0	26	0.84
1042928--1043003	32	2.3	33	88	2	118	68	0	2	28	1.03
1050574--1050599	11	2.4	11	100	0	52	26	0	0	73	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1055785--1055832	19	2.5	19	86	3	60	56	6	10	27	1.57
1055800--1055877	29	2.7	29	83	0	102	50	6	12	30	1.66
1056427--1056495	36	1.9	36	91	8	115	42	4	0	53	1.20
1057289--1057318	14	2.1	14	100	0	60	46	0	53	0	1.00
1068731--1068769	20	2.0	20	94	0	69	38	23	5	33	1.77
1069838--1069905	29	2.4	29	80	2	75	52	8	10	27	1.65
1070839--1070865	3	9.0	3	100	0	54	33	0	33	33	1.58
1075485--1075517	17	1.9	17	93	0	57	27	9	36	27	1.87
1077680--1077829	77	1.9	77	89	2	230	28	18	13	39	1.89
1087844--1087868	1	25.0	1	100	0	50	100	0	0	0	0.00
1092859--1092915	23	2.5	24	82	8	73	45	0	0	54	0.99
1095646--1095687	12	3.5	12	77	9	50	50	0	0	50	1.00
1095604--1095687	37	2.4	36	75	11	93	48	0	0	51	1.00
1097623--1097648	7	3.7	7	100	0	52	42	0	0	57	0.98
1102252--1102295	23	1.9	23	85	0	61	54	4	4	36	1.41
1105984--1106054	23	3.1	23	72	11	65	49	5	8	36	1.57
1114195--1114423	113	2.0	113	93	0	386	28	15	20	34	1.94
1120334--1120360	14	1.9	14	100	0	54	14	3	0	81	0.82
1120379--1120414	8	4.6	8	96	3	65	77	0	11	11	0.99
1121276--1121303	11	2.5	11	100	0	56	35	0	0	64	0.94
1121413--1121453	15	2.9	14	86	10	57	75	0	0	24	0.80
1122343--1122380	10	4.0	10	83	13	53	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1122614--1122651	18	2.0	20	85	10	53	84	10	2	2	0.83
1125709--1125808	6	16.3	6	77	10	87	76	1	4	19	1.01
1125712--1125771	31	1.9	31	93	6	104	80	0	3	16	0.85
1125709--1125834	36	3.3	35	78	20	121	75	0	4	19	1.03
1126622--1126713	22	4.0	24	80	12	113	68	0	3	28	1.05
1126622--1126788	46	3.5	47	77	15	173	65	0	5	28	1.14
1126647--1126789	74	1.9	74	84	7	191	64	0	5	30	1.16
1144469--1144556	12	7.0	12	76	18	58	76	2	2	19	1.01
1144483--1144563	3	27.0	3	71	14	60	72	1	2	23	1.03
1144480--1144559	6	13.3	6	83	10	83	75	1	2	21	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100