genome.fa.s168.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  8  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1313888--1313936	24	2.0	24	100	0	98	34	20	20	24	1.96
1318104--1318139	17	2.1	18	89	5	56	63	0	8	27	1.23
1322722--1323140	58	7.0	58	73	13	296	33	13	6	47	1.69
1322722--1323115	120	3.3	117	85	8	492	33	13	6	45	1.70
1323238--1323274	16	2.4	15	86	4	56	72	8	0	18	1.08
1323233--1323263	14	2.2	14	100	0	62	64	12	0	22	1.27
1323520--1323552	16	2.1	16	94	0	57	0	39	0	60	0.97
1324092--1324168	29	2.6	29	78	10	84	76	3	1	18	1.01
1324091--1324161	6	12.0	6	71	16	51	76	4	1	18	1.03
1324336--1324450	22	5.2	22	74	4	115	38	9	1	50	1.45
1324336--1324450	44	2.6	44	80	2	142	38	9	1	50	1.45
1324329--1324456	66	1.9	66	82	3	159	38	9	2	50	1.48
1324546--1324616	22	3.2	21	84	7	79	36	9	1	52	1.44
1326977--1327049	32	2.2	33	82	4	94	45	5	0	49	1.25
1329024--1329152	69	1.9	69	90	3	206	24	25	10	38	1.88
1330106--1330208	51	2.0	51	90	3	163	37	10	14	36	1.81
1336674--1336747	21	3.5	20	80	7	85	37	10	12	39	1.78
1336674--1336756	21	4.0	21	75	6	78	36	9	12	42	1.75
1336653--1336768	42	2.8	42	74	12	114	37	7	11	43	1.69
1337147--1337331	22	8.4	22	72	7	115	37	8	8	45	1.65
1337080--1337480	44	9.0	43	69	13	125	37	9	7	45	1.65
1337343--1337448	22	4.9	22	79	10	92	39	12	4	43	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1337432--1337473	22	1.9	22	90	0	66	30	9	4	54	1.53
1347328--1347376	24	2.0	24	96	0	89	36	22	8	32	1.84
1351241--1351291	19	2.6	20	93	6	86	25	1	3	68	1.17
1351241--1351304	10	6.7	9	76	16	58	28	1	3	67	1.15
1351241--1351304	19	3.3	19	87	8	76	28	1	3	67	1.15
1356173--1356227	7	8.1	7	84	15	55	41	1	0	56	1.10
1356181--1356228	2	25.0	2	87	8	73	45	0	0	54	0.99
1356181--1356227	25	1.9	24	95	4	85	44	0	0	55	0.99
1357645--1357680	18	2.0	18	94	0	63	36	5	0	58	1.22
1365463--1365503	11	3.2	13	76	16	50	63	2	0	34	1.08
1367576--1367615	19	2.1	19	100	0	80	37	10	10	42	1.72
1390275--1390300	2	13.0	2	100	0	52	50	0	0	50	1.00
1401452--1401482	6	5.0	6	96	4	53	32	3	0	64	1.09
1423029--1423064	2	18.0	2	94	0	63	50	2	0	47	1.15
1432389--1432435	23	2.0	23	84	8	60	59	0	2	38	1.09
1432512--1432554	11	3.9	11	76	11	52	69	2	4	23	1.18
1432510--1432552	22	2.0	22	90	0	68	67	2	6	23	1.27
1434168--1434209	20	2.0	20	86	9	57	35	0	2	61	1.09
1434177--1434220	20	2.3	19	84	7	61	38	0	0	61	0.96
1436914--1436954	20	2.0	20	86	9	57	41	4	2	51	1.36
1438247--1438301	24	2.6	20	83	13	58	0	36	0	63	0.95
1438247--1438284	8	4.8	8	96	0	58	0	42	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1441747--1441781	15	2.2	16	90	5	54	80	0	17	2	0.84
1441743--1441786	22	2.0	21	86	4	61	79	0	18	2	0.83
1455096--1455142	2	23.5	2	86	0	67	48	4	2	44	1.34
1465496--1465533	17	2.2	17	86	9	51	34	0	2	63	1.09
1477172--1477210	18	2.2	18	85	0	51	46	2	10	41	1.51
1477275--1477334	22	2.7	23	75	12	63	70	3	3	23	1.18
1477613--1477672	10	6.6	10	75	21	69	70	0	1	28	0.97
1477617--1477669	17	3.0	19	71	21	60	71	0	1	26	0.96
1477629--1477682	26	2.2	24	87	12	74	68	1	1	27	1.10
1477728--1477771	24	1.9	24	90	9	74	43	31	0	25	1.55
1477732--1477781	24	2.1	23	82	10	57	52	26	0	22	1.48
1479805--1479863	30	2.0	29	83	12	75	79	1	13	5	0.97
1479825--1479863	17	2.3	17	81	0	51	84	0	10	5	0.76
1481247--1481332	4	21.5	4	77	4	84	23	23	3	50	1.65
1485167--1485407	33	7.4	32	72	11	152	31	20	16	31	1.95
1485149--1485423	32	8.5	32	74	10	193	30	21	16	32	1.95
1486170--1486577	37	10.9	37	72	10	136	14	22	16	46	1.83
1486185--1486390	38	5.5	38	72	11	131	15	22	15	47	1.82
1486185--1486613	75	5.7	74	70	8	226	14	22	15	47	1.82
1486262--1486613	113	3.1	112	76	7	279	15	23	14	46	1.82
1486487--1486595	36	3.0	36	80	9	123	15	26	13	44	1.84
1486493--1486640	73	2.0	73	80	7	167	15	25	12	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1486654--1487155	106	4.7	105	79	2	457	21	20	12	45	1.84
1486622--1487731	35	31.2	34	66	9	286	21	20	11	45	1.83
1486757--1487144	211	1.8	211	85	1	544	21	20	11	46	1.83
1487107--1487233	65	2.0	65	85	3	175	19	22	15	42	1.89
1487207--1487500	36	8.2	36	70	3	171	22	19	10	47	1.79
1487163--1487813	109	6.0	107	80	3	579	22	20	10	46	1.81
1487938--1487974	3	12.3	3	100	0	74	67	0	0	32	0.91
1489601--1489644	24	1.9	24	90	9	74	43	31	0	25	1.55
1489596--1489645	24	2.2	23	82	10	68	46	32	0	22	1.52
1489605--1489664	24	2.6	23	79	10	59	50	26	0	23	1.50
1491206--1491245	20	2.0	20	85	9	55	47	0	2	50	1.14
1491419--1491451	2	16.5	2	100	0	66	51	0	0	48	1.00
1493073--1493109	2	18.5	2	100	0	74	51	0	0	48	1.00
1493617--1493831	109	2.0	109	88	1	324	42	6	4	46	1.50
1494182--1494236	22	2.5	22	81	0	65	50	3	7	38	1.48
1494258--1494355	22	4.5	21	73	8	79	52	8	5	34	1.53
1494381--1494691	22	14.5	22	70	10	117	46	6	8	38	1.60
1494183--1494465	44	6.4	44	68	9	132	48	6	8	37	1.58
1494711--1494752	22	1.9	22	85	0	57	47	0	14	38	1.44
1494829--1494914	22	3.9	22	73	0	73	46	5	9	38	1.60
1494935--1494997	22	2.8	22	79	18	67	50	1	9	38	1.44
1495362--1495664	22	13.7	21	68	14	85	49	6	7	35	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1495382--1495442	11	5.5	11	72	0	50	52	4	6	36	1.49
1495379--1495509	44	2.9	45	79	7	151	48	3	8	38	1.51
1495473--1495557	44	1.9	44	83	4	109	50	7	8	34	1.59
1495548--1495675	43	2.9	42	79	9	123	49	7	7	35	1.59
1495754--1495868	22	5.2	22	73	5	79	46	4	8	40	1.54
1495866--1496093	22	10.2	22	72	10	124	45	8	8	37	1.66
1496059--1496100	22	1.9	22	90	0	66	54	7	7	30	1.54
1496404--1496471	22	3.1	22	78	2	84	50	8	5	35	1.58
1496490--1496527	20	1.9	20	88	0	58	52	18	7	21	1.70
1496383--1496541	21	7.6	21	73	10	112	49	11	6	32	1.65
1496531--1496563	16	2.1	16	88	11	50	60	6	3	30	1.36
1504622--1504741	54	2.2	56	87	4	172	47	4	14	34	1.63
1505152--1505201	20	2.4	21	81	15	59	72	4	0	24	1.02
1510521--1510594	28	2.8	27	71	16	66	54	0	0	45	1.00
1511754--1511784	2	15.0	2	93	6	53	48	3	0	48	1.17
1517264--1517312	23	2.1	23	84	0	62	51	6	2	40	1.38
1518183--1518211	13	2.1	14	93	6	51	41	0	0	58	0.98
1524863--1524894	13	2.5	13	94	0	55	65	6	3	25	1.31
1527573--1527610	20	1.9	20	88	0	58	7	15	18	57	1.62
1530936--1531022	42	2.1	42	97	0	165	41	12	16	29	1.85
1531867--1531905	2	19.5	2	94	0	69	0	53	0	46	1.00
1536286--1536318	17	1.9	17	93	0	57	78	3	0	18	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1536337--1536379	20	2.0	22	86	8	63	60	2	0	37	1.10
1536337--1536380	22	2.0	22	82	8	54	61	2	0	36	1.09
1536443--1536603	80	2.0	80	96	1	295	40	8	14	36	1.75
1537116--1537150	7	5.0	7	89	0	52	45	2	0	51	1.16
1537177--1537239	23	2.9	22	77	15	67	26	3	4	65	1.28
1539628--1539689	28	2.2	28	85	0	79	56	4	9	29	1.52
1540198--1540227	14	2.1	14	93	0	51	53	0	0	46	1.00
1540581--1540629	21	2.2	21	82	7	53	2	12	2	83	0.82
1549053--1549475	187	2.3	189	85	4	572	37	10	10	41	1.75
1550350--1550414	28	2.3	28	83	0	76	29	4	21	44	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100