genome.fa.s168.2.7.7.80.10.50.1000.80.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  80  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14296652--14296734	31	2.6	31	75	9	96	46	3	9	39	1.54
14298298--14298374	35	2.2	35	88	0	109	32	11	20	35	1.89
14301433--14301520	12	7.2	12	67	7	52	44	27	9	19	1.80
14301427--14301520	37	2.5	38	82	3	111	45	26	9	18	1.79
14308651--14308688	19	2.0	19	85	10	51	21	10	26	42	1.85
14311730--14311772	21	2.0	21	100	0	86	27	16	13	41	1.86
14313104--14313178	32	2.3	32	90	0	123	45	1	10	42	1.47
14318083--14318139	26	2.2	25	84	6	78	47	12	8	31	1.72
14318206--14318255	26	1.9	26	83	0	64	66	6	2	26	1.26
14318295--14318350	18	3.1	18	65	14	51	48	10	8	32	1.69
14322585--14322632	23	2.1	23	92	0	78	31	16	12	39	1.86
14326962--14327193	114	2.0	115	90	0	367	40	18	13	26	1.89
14328024--14328062	11	3.4	11	89	7	51	43	0	0	56	0.99
14328030--14328070	11	3.5	13	84	15	54	39	0	0	60	0.96
14328024--14328070	12	4.0	12	81	15	53	42	0	0	57	0.98
14328433--14328494	19	3.2	19	75	4	61	17	14	25	41	1.88
14328763--14328811	26	1.9	25	87	4	71	22	4	2	71	1.13
14328908--14328941	3	11.0	3	93	6	59	32	0	0	67	0.91
14329022--14329053	3	10.7	3	93	0	55	65	3	0	31	1.08
14337073--14337120	20	2.3	21	83	13	64	25	4	0	70	1.04
14343002--14343256	135	1.9	135	91	0	420	33	15	11	39	1.83
14348876--14349027	26	5.8	26	76	4	117	21	23	23	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14348894--14349027	52	2.5	53	75	8	130	23	22	23	31	1.99
14349083--14349184	3	34.3	3	71	18	63	26	1	3	67	1.18
14349070--14349115	14	3.1	16	78	15	53	32	2	2	63	1.19
14349203--14349229	13	2.1	13	100	0	54	0	14	0	85	0.61
14361132--14361637	119	4.3	119	76	6	429	17	21	15	45	1.85
14361132--14361637	237	2.1	238	80	5	560	17	21	15	45	1.85
14361781--14361866	26	3.3	26	72	6	84	22	20	23	33	1.97
14361908--14362001	3	30.7	3	73	19	54	26	3	5	64	1.30
14361995--14362045	23	2.2	24	89	3	77	1	17	1	78	0.94
14362851--14362881	5	6.0	5	92	7	53	19	0	0	80	0.71
14362851--14362903	21	2.5	21	84	6	63	20	3	0	75	0.96
14365861--14365937	18	4.2	17	77	11	64	16	1	28	53	1.52
14365817--14365907	25	3.7	25	72	18	73	16	2	32	48	1.58
14366094--14366189	49	2.0	49	80	0	111	47	9	15	27	1.76
14368852--14369026	49	3.6	48	74	8	131	40	11	17	30	1.85
14368969--14369339	49	7.5	50	81	6	375	40	14	14	30	1.85
14369023--14369339	148	2.1	150	85	1	413	41	13	14	29	1.85
14369331--14369390	24	2.5	24	97	2	111	33	5	16	45	1.69
14369720--14369773	17	3.1	17	79	10	65	18	24	1	55	1.52
14369905--14369987	31	2.6	32	83	5	89	25	15	18	40	1.89
14370645--14371367	202	3.5	202	80	6	572	41	11	12	34	1.79
14370643--14371408	203	3.8	201	79	7	696	41	10	12	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14375429--14375468	18	2.4	16	87	8	53	40	2	0	57	1.12
14376334--14376666	183	1.8	184	83	1	445	45	10	10	33	1.72
14376508--14376935	236	1.8	236	85	4	612	45	12	10	31	1.76
14377714--14377759	7	6.7	7	92	2	67	4	0	10	84	0.75
14377763--14377862	51	2.0	50	82	5	121	44	11	16	29	1.81
14377875--14377990	47	2.4	45	79	13	117	39	12	17	30	1.87
14377954--14378269	50	6.4	48	74	10	171	40	12	13	32	1.82
14377982--14378306	51	6.5	49	75	8	246	41	12	12	33	1.80
14377982--14378306	98	3.3	99	77	7	275	41	12	12	33	1.80
14377987--14378306	50	6.4	51	77	4	242	42	12	12	32	1.80
14378856--14378934	31	2.5	31	83	4	88	26	12	24	36	1.91
14378995--14379069	31	2.4	32	77	4	82	21	10	18	49	1.77
14382211--14382247	17	2.3	15	90	9	56	2	8	0	89	0.58
14382211--14382245	12	2.9	12	86	0	52	2	8	0	88	0.61
14382880--14382904	9	2.8	9	100	0	50	48	8	0	44	1.32
14388738--14388829	31	3.0	30	83	12	114	26	13	18	42	1.86
14390423--14390455	15	2.2	15	89	10	50	3	12	0	84	0.72
14390810--14390847	19	2.0	19	90	10	60	2	18	0	78	0.86
14390810--14390875	22	3.2	20	81	12	71	3	19	0	77	0.90
14397023--14397255	19	12.4	18	67	15	82	21	1	31	45	1.60
14397088--14397190	13	8.0	13	69	17	63	20	0	33	45	1.58
14397139--14397261	7	20.2	6	72	20	71	21	0	33	45	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14397146--14397214	25	2.8	25	87	10	99	21	0	34	43	1.53
14397139--14397266	30	4.4	30	81	9	142	21	0	32	46	1.52
14397268--14397305	18	2.1	18	90	0	58	23	5	28	42	1.76
14397586--14397626	21	2.0	20	85	4	55	58	24	0	17	1.38
14399708--14399762	20	2.8	20	75	5	58	25	10	18	45	1.82
14410519--14410576	19	3.3	17	75	13	55	46	5	0	48	1.24
14415856--14415989	50	2.7	50	84	1	189	26	14	14	44	1.83
14416043--14416081	19	2.1	19	85	9	53	48	33	0	17	1.48
14416051--14416100	25	2.0	26	84	4	66	50	32	2	16	1.56
14416085--14416334	7	37.3	7	68	13	125	46	35	2	16	1.59
14416117--14416334	20	10.9	20	70	11	133	46	34	2	16	1.60
14416085--14416334	27	9.3	27	70	17	139	46	35	2	16	1.59
14416254--14416332	26	3.0	27	90	3	124	46	36	1	15	1.54
14417306--14417356	21	2.4	21	83	6	68	62	0	15	21	1.32
14427583--14427747	84	2.0	84	85	4	226	44	10	13	31	1.78
14428039--14428086	8	5.4	9	87	9	55	77	0	6	16	0.97
14428039--14428086	17	2.7	18	83	3	62	77	0	6	16	0.97
14428641--14429075	50	8.8	49	75	8	158	33	11	11	43	1.78
14428636--14429182	49	11.1	47	74	9	267	32	11	11	44	1.77
14428637--14429181	99	5.5	97	73	10	268	32	11	11	44	1.77
14429267--14429332	31	2.1	31	84	15	84	81	7	4	6	0.97
14429268--14429332	30	2.1	31	83	8	80	81	7	4	6	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14437349--14437517	84	2.0	84	95	0	302	28	24	10	36	1.89
14438147--14438678	115	4.6	115	75	6	396	24	27	11	36	1.90
14438517--14438759	115	2.1	115	80	4	267	23	26	12	38	1.90
14439049--14439212	12	13.9	12	67	21	53	37	5	2	54	1.37
14439086--14439220	3	45.0	3	72	16	84	36	5	0	57	1.26
14439136--14439174	19	2.0	20	85	5	53	38	7	0	53	1.30
14440001--14440080	18	4.5	17	77	13	65	25	3	0	71	1.03
14440006--14440046	22	1.9	21	90	5	64	17	7	0	75	1.02
14440051--14440078	5	5.6	5	100	0	56	35	0	0	64	0.94
14450740--14450797	26	2.2	26	81	0	71	20	0	36	43	1.52
14451577--14451611	14	2.6	14	90	4	54	0	17	2	80	0.84
14451581--14451612	12	2.6	13	85	14	50	0	18	3	78	0.89
14451580--14451647	26	2.8	23	80	10	73	4	19	4	72	1.19
14452928--14452963	13	2.8	12	88	12	54	2	5	2	88	0.67
14452927--14452966	19	2.1	19	90	0	62	2	5	7	85	0.83
14453058--14453310	51	5.0	50	72	12	185	34	18	19	27	1.95
14453035--14453328	102	2.9	100	76	7	272	34	18	19	27	1.96
14453347--14453655	51	6.1	50	75	10	222	35	18	19	26	1.95
14453753--14454026	42	6.5	41	74	5	183	41	13	15	29	1.85
14453853--14454055	86	2.4	82	80	4	219	40	13	15	30	1.86
14453708--14454048	41	8.1	42	72	7	192	40	13	15	30	1.87
14453931--14454091	82	2.0	82	86	2	225	39	13	18	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14454357--14454394	20	1.9	20	94	0	67	31	23	21	23	1.98
14455635--14455686	25	2.1	26	92	7	90	61	5	3	28	1.37
14456671--14456709	13	2.9	14	82	17	55	5	12	0	82	0.83
14456799--14456839	5	8.2	5	80	20	50	80	2	0	17	0.82
14456797--14456848	11	5.0	11	78	21	51	80	1	1	15	0.88
14456804--14456846	19	2.2	20	88	12	63	81	2	2	13	0.89
14456798--14456849	24	2.2	24	86	6	70	82	1	1	13	0.84
14457332--14457370	20	2.0	20	85	10	53	43	30	5	20	1.73
14457715--14457746	14	2.4	13	94	5	55	84	6	3	6	0.86
14457739--14457807	3	23.3	3	80	2	77	63	2	2	30	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100