genome.fa.s168.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  88  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15446309--15450266	355	11.0	357	73	10	2011	41	10	8	39	1.69
15449322--15452359	360	8.5	348	71	11	1038	41	9	8	40	1.67
15450281--15463608	181	73.6	178	70	12	4002	41	9	8	39	1.69
15450379--15453289	360	8.1	358	73	10	1298	42	9	7	40	1.67
15452347--15452662	169	1.9	168	81	7	390	40	9	8	42	1.67
15454015--15456927	542	5.4	526	76	7	1416	41	10	8	39	1.71
15456967--15463610	181	37.3	180	75	7	4609	41	9	8	39	1.69
15458424--15458737	161	1.9	162	86	5	449	40	10	7	41	1.68
15457180--15463608	898	7.2	873	74	10	3335	41	9	8	39	1.69
15460542--15460578	19	1.9	19	94	0	65	45	13	0	40	1.43
15458595--15463546	182	27.8	174	72	11	1352	41	10	8	39	1.69
15460548--15463551	357	8.4	356	74	8	2059	42	10	8	39	1.69
15465292--15465612	177	1.8	175	83	5	432	40	8	8	42	1.67
15465831--15466077	136	1.8	135	86	2	361	40	11	8	38	1.73
15466743--15467680	360	2.6	355	75	7	881	40	9	8	41	1.68
15466743--15467680	181	5.2	179	77	6	754	40	9	8	41	1.68
15467665--15467710	15	3.1	15	93	0	83	8	13	17	60	1.56
15467692--15468170	176	2.7	176	80	9	504	42	9	7	39	1.67
15468298--15468340	19	2.3	19	91	0	68	39	13	0	46	1.44
15468461--15468490	14	2.1	14	100	0	60	43	6	13	36	1.70
15468584--15468617	14	2.3	15	90	5	52	58	2	0	38	1.13
15468494--15470925	180	13.6	179	74	7	1541	41	9	8	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15469218--15470354	178	6.4	179	72	11	470	42	10	7	39	1.68
15469731--15470045	169	1.9	167	82	10	401	44	10	5	39	1.63
15468565--15470927	361	6.6	360	73	9	1436	42	9	8	39	1.67
15471841--15472215	144	2.6	143	83	2	448	30	15	13	40	1.86
15474416--15474783	182	2.0	182	79	7	399	43	10	7	38	1.69
15474407--15474969	181	3.1	180	77	7	525	41	9	7	40	1.67
15476149--15481538	181	29.9	178	75	8	3685	41	9	8	40	1.68
15476279--15481538	180	29.2	177	74	9	2265	41	9	8	40	1.68
15476149--15524280	720	66.7	712	70	12	15267	41	9	8	39	1.69
15476149--15520212	358	121.8	360	68	14	9877	41	9	8	39	1.69
15480549--15480584	17	2.1	18	89	5	56	75	0	2	22	0.94
15480918--15480950	15	2.1	16	94	5	59	54	0	0	45	0.99
15481475--15481609	65	2.1	65	100	0	270	43	13	2	40	1.59
15481979--15482275	163	1.8	163	80	7	361	41	10	8	39	1.70
15482858--15483680	181	4.6	181	72	9	403	41	9	9	39	1.70
15483810--15485799	516	3.8	512	76	11	1515	42	9	8	40	1.68
15484622--15484891	144	1.9	145	84	7	365	44	9	6	40	1.63
15484762--15485980	181	6.7	181	74	9	905	42	10	8	39	1.69
15486108--15486886	362	2.2	359	80	7	853	43	10	8	37	1.69
15484763--15486886	181	11.7	175	70	13	654	42	10	8	38	1.70
15485271--15487017	906	1.9	909	88	4	2630	42	10	8	38	1.71
15486954--15487371	181	2.3	182	79	4	461	40	10	8	40	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15487331--15487467	67	2.0	67	90	0	211	35	12	8	44	1.72
15487409--15488893	181	8.3	179	72	8	772	40	10	8	41	1.70
15487527--15488419	361	2.5	360	80	4	978	41	9	8	40	1.67
15488776--15489006	120	1.9	120	85	1	320	35	10	9	45	1.70
15488902--15489315	175	2.3	179	78	5	430	40	9	10	39	1.72
15489315--15494672	181	30.0	178	73	9	3175	41	10	8	39	1.69
15489414--15490535	177	6.3	180	76	6	501	41	10	8	39	1.70
15491199--15491502	164	1.9	164	82	4	389	39	10	7	42	1.68
15491356--15494698	363	9.3	359	75	8	2381	41	10	8	39	1.70
15492263--15492311	17	2.8	17	78	12	55	36	10	4	48	1.56
15492263--15492313	16	3.0	16	75	18	50	37	9	3	49	1.55
15491347--15520214	540	53.7	537	70	12	5814	41	9	8	39	1.69
15494225--15494698	178	2.7	176	78	6	454	39	9	9	40	1.71
15494696--15504720	181	55.5	181	70	11	4174	41	10	8	40	1.69
15495806--15495848	18	2.5	16	88	11	59	37	9	4	48	1.56
15497200--15504652	361	20.5	359	70	11	1822	41	10	8	40	1.69
15497200--15516798	362	54.5	360	69	13	3389	41	9	8	40	1.68
15499611--15499745	64	2.1	67	86	6	188	36	11	7	44	1.69
15499449--15499890	237	1.9	238	79	7	513	39	12	7	40	1.71
15501460--15501511	23	2.3	23	93	0	86	21	9	5	63	1.45
15502011--15502321	169	1.9	163	84	6	410	44	10	5	39	1.63
15504950--15516786	181	66.0	177	71	11	3343	42	9	8	39	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15504985--15508299	359	9.3	360	72	10	1103	41	9	7	40	1.66
15505622--15506483	363	2.4	359	80	6	874	42	8	8	40	1.66
15506005--15506977	517	1.9	515	78	7	1067	42	9	8	39	1.67
15507197--15508222	177	5.8	176	73	9	532	42	10	7	39	1.67
15509784--15510114	179	1.8	182	81	5	411	43	9	7	38	1.67
15508604--15520212	362	32.5	357	72	10	6152	41	10	8	39	1.69
15511354--15511392	19	1.9	20	85	15	53	33	17	12	35	1.88
15511609--15524278	717	17.6	714	70	13	4702	41	9	8	39	1.69
15511563--15520290	536	16.3	535	72	11	3932	41	9	8	39	1.69
15513087--15513401	162	1.9	162	84	5	422	40	9	7	42	1.65
15515381--15515417	19	1.9	19	94	0	65	45	13	0	40	1.43
15515377--15515423	19	2.5	19	80	13	60	40	19	0	40	1.51
15515398--15516782	180	7.6	180	79	8	1125	42	9	8	39	1.68
15515852--15515889	19	2.0	19	100	0	76	52	10	0	36	1.36
15515871--15516779	179	5.1	179	76	6	632	42	9	8	39	1.68
15516546--15517091	293	1.9	293	85	1	763	44	8	7	39	1.65
15517188--15520212	181	17.1	178	72	11	1312	41	9	9	39	1.71
15517657--15518457	356	2.2	353	81	8	902	42	10	8	38	1.71
15518657--15520212	179	8.7	177	75	8	1084	40	9	9	40	1.70
15520582--15520912	183	1.8	182	81	6	415	44	7	9	38	1.65
15520303--15524221	181	22.1	181	71	11	1908	42	9	8	39	1.69
15520303--15524221	356	11.1	356	72	12	2013	42	9	8	39	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15523006--15523321	169	1.9	168	84	4	422	43	11	6	39	1.65
15522370--15524057	892	1.9	885	79	6	1910	43	10	7	38	1.67
15521834--15524280	711	3.4	710	78	7	2115	42	9	8	39	1.67
15521765--15524278	361	7.0	358	75	7	1789	42	9	8	39	1.68
15525119--15525492	145	2.6	145	83	5	456	31	15	13	39	1.86
15525824--15525895	24	3.0	25	73	17	80	48	8	31	11	1.68
15527708--15541604	181	77.7	182	73	10	7560	41	9	8	40	1.69
15540407--15540440	15	2.3	15	100	0	68	52	5	0	41	1.25
15540405--15540445	15	2.5	17	80	19	59	48	4	0	46	1.23
15541613--15544080	181	13.8	180	73	9	1554	41	10	8	40	1.69
15541613--15543951	358	6.5	353	74	9	1685	41	10	8	40	1.69
15544635--15544966	182	1.8	181	83	3	443	44	9	6	39	1.64
15545692--15547434	181	9.7	181	77	6	1318	40	8	8	41	1.66
15547295--15547588	160	1.8	160	82	1	383	39	8	8	42	1.66
15546572--15548302	877	2.0	868	80	5	1945	40	8	9	41	1.68
15547484--15548417	175	5.2	181	74	9	428	38	7	10	42	1.69
15547923--15548308	176	2.2	177	79	6	449	40	8	10	40	1.70
15547436--15548500	181	6.0	177	75	8	480	38	7	10	42	1.69
15548712--15548754	18	2.4	18	96	0	77	44	2	0	53	1.13
15548730--15549365	181	3.5	178	77	4	549	41	7	10	40	1.68
15549911--15551713	360	5.0	361	79	7	1661	40	7	9	41	1.66
15549911--15551681	181	9.9	181	78	6	1566	40	7	9	41	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15550983--15551672	170	3.9	170	75	12	480	41	7	8	42	1.62
15551158--15551678	182	2.9	181	77	8	445	40	7	9	42	1.65
15552544--15553438	180	5.0	178	78	6	799	41	7	10	41	1.66
15553436--15553463	14	2.0	14	100	0	56	35	14	7	42	1.73
15554084--15555198	181	6.2	180	76	7	900	41	6	9	41	1.63
15554193--15555145	363	2.6	359	82	5	1102	41	6	9	42	1.63
15554037--15559605	540	10.2	531	72	11	1216	40	8	10	41	1.69
15555128--15555255	67	1.9	67	86	0	184	43	7	10	38	1.67
15555195--15560113	181	27.4	180	75	7	3616	40	8	10	41	1.70
15560129--15560175	18	2.7	18	80	12	62	42	8	4	44	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100