genome.fa.s168.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  97  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17091097--17091138	21	2.0	21	100	0	84	47	4	19	28	1.69
17097367--17097411	23	2.0	23	100	0	90	42	8	13	35	1.75
17098736--17098780	16	2.7	17	83	13	58	60	11	4	24	1.49
17098736--17098787	17	3.1	16	76	15	52	55	9	7	26	1.59
17104396--17104439	14	3.2	14	84	12	56	56	2	2	38	1.24
17107916--17107958	7	6.3	7	82	15	54	62	0	9	27	1.25
17109998--17110087	13	6.8	13	75	16	87	58	17	2	21	1.49
17109985--17110061	39	2.0	40	92	2	129	58	16	2	22	1.50
17109983--17110049	20	3.4	20	72	12	66	55	19	2	22	1.57
17110008--17110101	26	3.7	26	81	5	93	58	17	2	22	1.49
17110116--17110154	13	2.9	14	81	14	55	66	20	0	12	1.24
17110233--17110296	20	3.2	20	71	20	55	59	17	3	20	1.51
17110374--17110406	13	2.5	13	90	9	50	60	18	0	21	1.36
17116393--17116429	10	3.9	10	79	13	51	81	8	2	8	0.97
17118304--17118371	29	2.3	30	94	2	120	39	20	4	35	1.73
17125349--17125388	20	2.0	20	100	0	80	40	15	5	40	1.68
17126353--17126417	5	13.0	5	76	10	53	76	6	15	1	1.05
17126354--17126418	20	3.2	20	72	16	62	78	6	13	1	1.01
17129208--17129278	33	2.2	31	87	5	97	35	5	4	54	1.43
17132660--17132717	22	2.5	24	75	10	68	44	6	0	48	1.29
17132951--17132998	21	2.2	21	85	3	60	45	6	0	47	1.27
17132953--17133030	16	4.9	16	67	13	54	50	7	0	42	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17148750--17148802	3	17.7	3	92	0	88	66	30	0	3	1.10
17153190--17153224	3	11.7	3	100	0	70	68	0	0	31	0.90
17154587--17154630	3	14.3	3	95	4	79	65	0	34	0	0.93
17156053--17156081	13	2.1	14	93	6	51	68	0	0	31	0.89
17157413--17157461	25	2.0	25	88	8	73	42	2	0	55	1.11
17159327--17159462	62	2.2	62	85	0	182	30	13	16	38	1.88
17165901--17166711	160	5.2	160	73	12	450	31	9	15	43	1.78
17167465--17167517	27	2.0	27	100	0	106	30	18	7	43	1.78
17168344--17168368	13	1.9	13	100	0	50	40	0	8	52	1.31
17171365--17171408	16	2.6	17	78	7	54	38	27	6	27	1.82
17171250--17171418	85	2.0	86	86	1	241	31	23	11	33	1.91
17172744--17172776	14	2.3	15	89	5	50	18	0	3	78	0.87
17175009--17175045	16	2.4	16	82	17	51	45	2	2	48	1.30
17175419--17175462	22	2.0	22	100	0	88	31	13	22	31	1.93
17175441--17175626	102	1.8	102	94	0	327	30	15	16	38	1.89
17178299--17178632	162	2.1	162	81	6	383	43	14	7	34	1.75
17183662--17183755	44	2.2	44	88	5	138	56	10	15	17	1.67
17184479--17184595	60	2.0	60	81	10	141	18	18	14	47	1.82
17184545--17184658	59	1.9	59	82	3	140	17	21	18	42	1.89
17185154--17185223	3	22.7	3	85	5	95	28	1	2	67	1.14
17185968--17186014	24	2.0	24	83	8	60	21	4	4	70	1.22
17186269--17186340	5	14.8	5	70	21	55	18	1	5	75	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17186273--17186339	13	5.2	13	78	21	70	16	1	5	76	1.06
17186272--17186334	32	1.9	33	87	6	92	17	1	6	74	1.10
17186270--17186339	26	2.6	28	77	22	87	17	1	5	75	1.06
17186269--17186348	19	4.2	18	72	21	56	18	2	5	73	1.13
17187585--17187637	21	2.5	20	76	8	52	41	0	3	54	1.18
17189420--17189488	20	3.7	18	72	16	61	63	0	5	30	1.17
17189453--17189503	13	3.5	15	82	17	63	66	0	1	31	1.03
17192357--17192430	13	5.7	13	79	4	69	44	20	8	27	1.79
17192367--17192449	26	3.2	26	77	1	76	49	21	7	21	1.73
17196446--17196567	21	5.8	20	73	10	91	46	26	3	23	1.67
17196449--17196566	43	2.8	43	85	3	150	48	24	3	23	1.66
17197743--17197813	26	2.7	26	82	0	70	19	9	21	49	1.77
17198219--17198270	6	8.2	6	79	12	59	21	1	1	75	1.00
17200983--17201017	3	11.7	3	100	0	70	31	0	0	68	0.90
17202040--17202152	33	3.5	34	77	12	105	34	12	18	34	1.88
17203015--17203096	23	3.5	24	72	11	62	7	24	0	68	1.15
17203577--17203651	14	5.3	15	73	19	54	0	17	4	78	0.90
17203576--17203661	32	2.7	32	80	5	93	0	18	3	77	0.90
17203591--17203667	25	3.0	25	75	3	73	0	16	3	79	0.88
17204357--17204418	8	7.5	8	77	13	56	3	14	0	82	0.80
17204366--17204418	12	4.7	12	77	11	58	3	15	0	81	0.83
17204362--17204409	22	2.2	22	88	0	69	4	12	0	83	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17204350--17204418	30	2.3	29	82	12	77	2	15	0	81	0.81
17204362--17204418	22	2.7	22	81	5	55	3	14	0	82	0.80
17204351--17204418	20	3.2	20	78	10	73	2	14	0	82	0.79
17208861--17208909	15	3.4	15	77	11	66	38	18	6	36	1.76
17211261--17211299	18	2.0	20	85	9	55	23	0	17	58	1.38
17212682--17212715	10	3.3	10	91	4	50	26	0	8	64	1.22
17214981--17215061	39	2.1	39	100	0	162	28	17	25	28	1.97
17215017--17215131	61	1.9	61	100	0	230	32	19	20	27	1.97
17217174--17217283	14	8.2	13	75	12	80	21	1	23	52	1.56
17217174--17217283	13	8.2	13	81	5	121	21	1	23	52	1.56
17217187--17217283	40	2.4	40	89	0	140	22	2	21	53	1.56
17218304--17218440	44	3.2	43	73	12	120	48	16	8	25	1.75
17218304--17218611	86	3.5	87	74	9	223	46	18	7	27	1.76
17218337--17218577	44	5.4	43	76	12	166	47	17	7	28	1.74
17218304--17218606	45	6.8	44	77	9	213	45	18	7	28	1.76
17221145--17221169	13	1.9	13	100	0	50	12	16	0	72	1.13
17221173--17221210	17	2.3	17	81	4	51	2	21	0	76	0.91
17226016--17226066	21	2.4	21	76	0	57	11	11	7	68	1.39
17235314--17235426	57	2.0	57	98	0	217	38	24	13	23	1.90
17245906--17245936	16	1.9	16	93	0	53	19	6	25	48	1.72
17248939--17248975	19	1.9	19	88	0	56	78	8	13	0	0.96
17255310--17255345	17	2.1	17	100	0	72	44	8	13	33	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17257570--17257623	7	8.1	7	84	10	53	27	11	0	61	1.30
17257598--17257624	3	9.0	3	100	0	54	33	0	0	66	0.92
17260901--17260953	20	2.7	20	100	0	106	20	15	26	37	1.92
17264971--17265006	16	2.1	16	90	10	54	75	5	16	2	1.12
17265941--17265979	21	2.0	18	85	14	51	48	0	0	51	1.00
17266224--17266289	29	2.3	29	87	7	98	40	1	4	53	1.31
17266789--17266853	24	2.8	24	68	17	57	33	3	3	60	1.28
17272520--17272563	22	2.0	22	95	0	79	43	13	11	31	1.80
17276203--17276262	25	2.4	25	85	0	75	45	18	23	13	1.84
17276410--17276453	22	2.0	22	95	0	79	43	13	11	31	1.80
17279519--17279568	24	2.1	24	84	0	64	32	10	16	42	1.81
17281727--17281762	18	2.0	18	100	0	72	44	0	27	27	1.55
17282107--17282232	63	2.0	63	95	0	225	24	28	10	36	1.88
17284767--17284808	22	1.9	22	85	9	59	33	9	9	47	1.68
17288714--17288755	22	1.9	22	90	0	66	33	11	9	45	1.73
17298037--17298077	22	2.0	21	85	9	57	46	0	7	46	1.30
17298160--17298185	2	13.0	2	100	0	52	50	0	0	50	1.00
17298936--17298970	18	1.9	18	88	11	54	88	0	11	0	0.51
17298936--17298970	15	2.2	16	90	5	54	88	0	11	0	0.51
17300443--17300498	2	28.5	2	89	10	89	50	0	1	48	1.11
17305071--17305157	43	2.0	43	97	0	165	29	18	11	40	1.86
17308848--17308872	12	2.1	12	100	0	50	36	0	8	56	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17309073--17309123	26	2.0	26	88	0	75	15	1	35	47	1.57
17309134--17309382	7	36.6	7	69	20	111	16	0	36	46	1.51
17309193--17309284	33	2.8	34	76	3	98	18	0	32	48	1.48
17309273--17309329	30	1.9	30	92	0	96	10	1	42	45	1.49
17309186--17309406	13	16.4	14	70	14	101	17	0	35	46	1.52
17309151--17309382	20	11.6	20	75	11	122	16	0	37	46	1.51
17309186--17309406	7	33.8	6	69	18	74	17	0	35	46	1.52
17309767--17309813	21	2.3	21	88	3	69	57	14	8	19	1.63
17310337--17310379	20	2.0	23	86	13	65	74	4	9	11	1.20
17310832--17311219	143	2.7	142	76	7	340	40	13	14	31	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100