genome.fa.s168.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  28  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5186043--5186085	3	14.0	3	95	4	77	65	0	0	34	0.93
5187105--5187185	26	3.4	24	85	9	103	33	2	0	64	1.07
5188555--5188690	52	2.6	52	81	6	143	27	24	7	41	1.81
5188602--5188710	52	2.1	52	84	6	141	27	18	8	45	1.77
5188735--5188776	11	3.8	11	90	0	66	50	30	0	19	1.48
5188735--5188777	22	2.0	22	95	0	77	48	30	0	20	1.50
5188994--5189058	25	2.7	25	80	4	71	26	40	4	29	1.76
5189017--5189142	25	5.1	25	76	1	101	20	33	7	38	1.80
5189672--5189828	52	3.0	52	82	9	194	27	22	8	42	1.82
5193496--5193541	23	2.0	23	100	0	92	26	8	4	60	1.44
5194959--5194993	7	5.0	7	85	0	52	68	0	5	25	1.11
5195570--5195621	26	2.0	26	92	0	86	57	19	0	23	1.40
5195754--5195838	42	2.0	43	84	6	111	41	4	15	38	1.68
5196178--5196220	19	2.3	19	88	8	61	79	0	4	16	0.90
5198652--5198678	2	13.5	2	100	0	54	51	48	0	0	1.00
5199034--5199060	14	1.9	14	100	0	54	66	0	3	29	1.09
5199128--5199178	2	25.5	2	100	0	102	0	49	0	50	1.00
5202507--5202545	20	1.9	20	89	5	60	58	12	7	20	1.58
5208058--5208122	28	2.2	30	84	10	82	32	1	1	64	1.12
5211700--5212028	43	7.6	43	77	8	129	43	17	13	26	1.86
5211700--5212028	44	7.6	43	78	6	263	43	17	13	26	1.86
5211703--5212020	86	3.7	86	78	7	295	44	16	13	26	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5212252--5212310	20	3.0	20	94	0	100	18	30	28	22	1.97
5212349--5212374	11	2.4	11	100	0	52	7	0	0	92	0.39
5212403--5212439	14	2.8	14	88	8	51	43	0	5	51	1.24
5213054--5213117	20	3.2	20	97	0	119	40	31	23	4	1.75
5213135--5213179	20	2.2	20	84	0	54	33	28	22	15	1.95
5213426--5213467	14	3.1	15	80	19	56	7	42	21	28	1.79
5213426--5213462	13	2.7	14	80	20	51	8	43	24	24	1.81
5213509--5213533	1	25.0	1	100	0	50	0	0	0	100	0.00
5213564--5214013	152	3.0	152	95	1	794	30	14	17	38	1.89
5214321--5214391	33	2.2	33	90	10	110	39	18	15	26	1.90
5219123--5219147	5	5.0	5	100	0	50	80	0	0	20	0.72
5222257--5222338	41	2.0	41	90	0	128	42	13	9	34	1.77
5224394--5224439	23	2.0	23	95	0	83	26	10	4	58	1.50
5226614--5226663	13	3.7	13	79	10	64	30	2	0	68	1.01
5226609--5226669	28	2.1	29	93	3	106	34	1	0	63	1.04
5229604--5229691	28	3.2	28	66	15	74	28	11	6	53	1.62
5231281--5231664	44	9.1	43	75	11	262	42	17	12	27	1.85
5231389--5231451	32	2.0	30	90	6	99	47	14	7	30	1.72
5231419--5231663	43	5.7	42	76	9	226	44	15	12	28	1.83
5231425--5231661	86	2.7	87	82	4	302	44	14	13	27	1.83
5234291--5234402	54	2.1	55	91	5	183	37	11	6	44	1.66
5234394--5234441	17	2.9	16	87	9	62	81	2	2	14	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5234399--5234438	12	3.3	12	86	6	55	82	2	0	15	0.77
5234394--5234526	29	4.2	29	71	22	76	69	3	2	24	1.14
5234467--5234522	3	19.0	3	87	10	80	69	0	0	30	0.89
5234479--5234534	27	2.1	27	90	6	87	73	0	1	25	0.93
5234471--5234538	30	2.2	30	86	2	91	75	0	1	23	0.89
5234994--5235038	19	2.2	20	84	11	56	57	17	0	24	1.40
5235268--5235413	24	6.4	23	72	16	101	62	2	4	31	1.25
5235270--5235395	48	2.7	45	80	12	123	61	1	3	33	1.24
5235269--5235409	10	13.9	10	70	14	76	61	2	4	31	1.27
5240459--5240503	22	2.0	22	95	0	81	66	4	6	22	1.33
5240428--5240487	14	4.5	13	72	17	52	71	1	3	23	1.10
5241027--5241065	19	2.1	19	95	0	69	56	15	0	28	1.40
5244092--5244156	28	2.2	30	86	5	89	30	1	1	66	1.10
5244107--5244171	28	2.3	28	86	0	94	36	1	3	58	1.23
5247735--5248085	43	8.1	43	76	5	226	42	16	13	27	1.86
5266103--5266140	16	2.4	16	82	4	51	26	10	0	63	1.27
5266545--5266574	2	15.0	2	100	0	60	50	0	0	50	1.00
5267709--5267852	44	3.3	43	80	9	159	39	11	13	35	1.81
5267745--5268235	44	11.1	44	72	10	210	38	13	13	34	1.83
5267829--5268126	134	2.2	131	81	7	325	39	14	12	33	1.83
5267700--5268175	89	5.4	85	75	8	289	39	13	13	34	1.83
5271167--5271241	29	2.7	29	87	4	109	8	16	5	70	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5271167--5271247	27	2.9	27	82	7	108	11	16	4	67	1.37
5285354--5285378	11	2.3	11	100	0	50	84	0	8	8	0.79
5286221--5286312	37	2.6	34	81	11	114	38	15	13	33	1.86
5286806--5286912	4	26.0	4	68	9	63	27	5	0	66	1.20
5286807--5286940	21	6.4	20	73	16	103	27	5	0	66	1.18
5286812--5286927	45	2.7	45	85	7	143	28	5	0	65	1.20
5287695--5287726	3	10.7	3	100	0	64	31	0	0	68	0.90
5287698--5287753	18	3.1	18	87	5	69	28	8	0	62	1.25
5287821--5288059	60	3.9	62	73	14	185	49	6	10	33	1.61
5289209--5289422	72	3.0	72	97	0	401	29	24	11	34	1.91
5298735--5298829	14	6.1	14	73	25	59	80	0	9	10	0.92
5298733--5298827	35	2.8	35	79	7	108	81	0	8	10	0.89
5298733--5298827	36	2.8	34	80	10	99	81	0	8	10	0.89
5298733--5298825	16	5.6	16	77	12	82	80	0	8	10	0.90
5299958--5300038	40	2.0	41	85	7	112	20	14	20	43	1.88
5300055--5300116	5	12.8	5	77	17	60	82	12	3	1	0.87
5300065--5300118	15	3.6	15	81	16	67	83	11	3	1	0.85
5300269--5300396	3	39.7	3	72	21	75	28	3	0	67	1.05
5300280--5300378	4	25.8	4	76	11	84	29	3	0	67	1.05
5300281--5300397	30	3.9	31	78	8	127	29	3	0	67	1.07
5301239--5301358	63	1.9	62	87	3	177	51	8	9	30	1.63
5301217--5301479	60	4.3	60	76	11	225	50	7	9	32	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5302159--5302213	27	2.0	28	85	3	76	25	7	18	49	1.73
5302187--5302450	75	3.5	75	86	0	332	25	13	20	40	1.89
5302366--5302619	99	2.6	99	83	2	332	26	12	20	40	1.88
5302736--5302967	49	4.8	49	82	4	274	28	12	20	37	1.89
5302736--5302967	97	2.4	96	84	3	279	28	12	20	37	1.89
5303091--5303126	17	2.3	15	90	9	54	22	0	2	75	0.94
5303099--5303147	15	3.1	16	85	11	57	14	6	2	77	1.05
5303124--5303174	6	8.2	6	78	8	57	1	15	0	82	0.76
5304373--5304419	18	2.5	19	79	6	60	68	2	2	27	1.13
5304849--5304886	17	2.2	18	86	13	53	76	2	2	18	1.02
5309576--5309641	23	2.9	22	82	6	78	22	6	1	69	1.19
5309528--5309641	45	2.5	45	79	13	110	24	4	0	70	1.11
5309528--5309588	6	9.7	6	78	7	50	24	3	0	72	1.00
5309528--5309699	17	10.2	17	68	15	67	23	5	1	69	1.15
5309537--5309656	62	1.9	62	83	9	156	25	5	0	68	1.17
5310104--5310142	19	2.1	19	95	0	69	66	0	33	0	0.92
5314253--5314314	26	2.2	28	91	8	101	50	11	11	27	1.72
5316936--5317009	27	2.7	27	81	14	89	72	0	20	6	1.06
5316965--5317006	18	2.3	19	76	8	52	80	0	16	2	0.81
5316925--5317021	27	3.5	26	72	9	86	70	0	22	7	1.12
5318167--5318225	22	2.7	23	84	7	77	38	8	18	33	1.81
5318788--5319205	41	10.1	41	81	4	340	24	14	22	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5319419--5319449	6	5.2	6	92	0	53	16	3	0	80	0.83
5319477--5319555	22	3.6	21	76	18	72	20	7	0	72	1.09
5319511--5319602	17	5.1	17	71	15	60	21	6	1	70	1.16
5319542--5319594	22	2.5	21	79	11	54	24	5	1	67	1.22
5319461--5319599	59	2.4	60	75	20	143	24	5	0	69	1.15
5320003--5320050	19	2.7	18	81	9	62	54	0	43	2	1.12
5320306--5320352	14	3.5	13	83	13	60	19	2	2	76	0.99
5320306--5320357	9	5.7	9	79	4	50	19	1	1	76	0.97
5320730--5320825	50	1.9	51	85	6	133	48	8	14	28	1.72
5326935--5326973	11	3.5	11	89	0	60	58	0	0	41	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100