genome.fa.s168.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  50  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9204643--9204713	31	2.3	30	77	13	74	52	5	0	42	1.25
9204666--9204716	25	2.1	25	82	7	61	56	1	0	41	1.10
9204774--9204845	13	5.7	13	76	17	71	37	2	0	59	1.12
9204763--9204824	24	2.6	24	82	12	74	33	3	0	62	1.11
9204783--9204824	11	3.6	11	81	12	57	33	2	0	64	1.07
9207900--9207955	21	2.6	21	81	13	60	73	1	21	3	1.08
9207994--9208050	30	1.9	30	89	3	89	66	0	29	3	1.08
9207994--9208070	25	3.2	23	72	15	66	70	0	27	2	1.01
9207994--9208077	32	2.7	30	79	16	84	69	0	28	2	1.01
9207995--9208077	37	2.2	37	85	8	105	68	0	28	2	1.02
9207993--9208074	29	2.7	30	73	16	71	68	0	29	2	1.03
9208207--9208278	24	2.8	24	77	18	74	55	8	13	22	1.65
9209088--9209139	24	2.2	24	89	0	77	46	25	5	23	1.74
9210369--9210402	2	17.0	2	87	0	50	44	0	0	55	0.99
9210573--9210635	32	2.0	31	87	3	90	36	3	12	47	1.58
9211246--9211297	19	2.8	19	77	13	63	57	9	1	30	1.42
9213856--9213913	25	2.3	25	100	0	116	25	12	3	58	1.49
9216418--9216473	21	2.5	22	80	14	60	37	3	7	51	1.47
9216800--9216844	22	2.1	21	84	12	56	57	6	4	31	1.44
9219179--9219250	24	2.8	24	77	18	74	55	9	13	20	1.67
9219217--9219306	23	4.0	22	72	8	83	55	4	13	26	1.57
9220056--9220124	24	2.8	24	80	2	75	47	24	4	23	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9220102--9220147	23	2.0	23	91	4	74	54	19	0	26	1.44
9221240--9221283	22	2.0	22	95	0	79	40	11	13	34	1.81
9221293--9221325	8	4.1	8	100	0	66	51	12	12	24	1.73
9225099--9225146	25	1.9	26	83	8	64	62	2	12	22	1.40
9227008--9227053	23	2.0	24	86	4	67	28	4	6	60	1.40
9231402--9231454	26	2.0	26	96	0	97	15	20	33	30	1.93
9233274--9233322	22	2.2	22	96	0	89	48	0	0	51	1.00
9234498--9234538	13	3.2	13	82	0	55	31	0	2	65	1.05
9235805--9235913	43	2.5	43	83	0	146	48	15	9	26	1.75
9235876--9235994	40	3.0	40	78	10	134	44	17	12	25	1.84
9236539--9236907	138	2.7	136	81	7	387	37	12	10	39	1.78
9236538--9236906	46	8.1	45	78	8	324	37	13	10	39	1.79
9237417--9237597	79	2.3	79	81	3	204	30	29	7	32	1.84
9238197--9238248	10	5.0	10	79	9	50	3	13	0	82	0.80
9238592--9238632	13	3.2	12	83	12	55	0	14	0	85	0.60
9238593--9238632	9	4.4	9	84	9	55	0	15	0	85	0.61
9238594--9238631	17	2.2	18	95	4	69	0	15	0	84	0.63
9242577--9243032	223	2.0	224	98	0	887	35	8	7	49	1.60
9243544--9243571	8	3.5	8	100	0	56	14	0	0	85	0.59
9255844--9255885	14	3.0	14	83	16	52	0	28	0	71	0.86
9255970--9256182	108	2.0	108	87	0	309	32	25	18	23	1.97
9259411--9259551	64	2.2	63	79	9	142	20	9	7	61	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9259528--9259557	11	2.7	11	94	0	51	0	6	3	90	0.56
9260578--9260603	11	2.4	11	100	0	52	7	0	0	92	0.39
9264717--9264762	22	2.1	21	84	4	56	28	4	2	65	1.23
9267831--9267872	20	2.1	20	100	0	84	19	9	4	66	1.38
9273458--9273666	108	1.9	108	87	3	305	33	23	19	22	1.97
9276009--9276058	25	2.0	25	84	7	66	34	6	18	42	1.74
9276190--9276234	19	2.4	19	88	0	63	26	28	17	26	1.98
9276682--9277040	60	6.1	57	87	8	476	45	8	12	33	1.73
9276804--9276892	27	3.2	27	62	20	65	41	6	14	37	1.72
9280820--9280872	10	5.3	10	82	8	72	84	0	13	1	0.69
9280831--9280898	32	2.2	30	86	5	91	80	0	14	4	0.85
9282157--9282754	42	14.5	42	89	6	870	22	16	22	38	1.93
9282144--9282754	83	7.4	82	87	8	843	22	17	22	38	1.93
9282763--9282797	9	3.8	9	92	3	52	91	8	0	0	0.42
9282761--9282797	10	3.7	10	92	0	56	91	8	0	0	0.41
9283483--9283554	31	2.3	32	83	11	96	26	26	22	25	2.00
9283606--9283650	19	2.4	19	92	0	72	22	28	22	26	1.99
9284103--9284465	57	6.1	58	89	6	525	45	8	12	33	1.73
9284103--9284465	116	3.1	117	89	7	547	45	8	12	33	1.73
9284228--9284316	27	3.2	27	62	20	65	41	6	14	37	1.72
9299776--9299801	2	13.0	2	100	0	52	50	0	0	50	1.00
9306605--9306743	32	4.4	29	82	13	104	75	0	13	10	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9306632--9306751	8	15.2	8	80	13	142	75	0	13	11	1.06
9307767--9308020	41	6.1	41	84	6	316	24	16	23	36	1.94
9307767--9308020	83	3.1	82	86	6	300	24	16	23	36	1.94
9307767--9308020	124	2.0	124	86	3	350	24	16	23	36	1.94
9308027--9308071	17	2.6	17	86	13	65	88	11	0	0	0.50
9308027--9308071	19	2.3	20	92	3	74	88	11	0	0	0.50
9308239--9308275	16	2.2	18	80	14	51	27	0	2	70	1.01
9308239--9308402	25	6.6	24	65	25	74	28	1	4	66	1.18
9308311--9308417	25	4.3	26	74	20	79	28	0	3	67	1.08
9308408--9308474	28	2.5	26	85	9	89	25	8	1	64	1.31
9309363--9309413	26	1.9	27	84	4	68	11	1	5	80	0.97
9309436--9309513	29	2.7	29	74	16	81	15	5	1	78	0.99
9309436--9309502	6	11.3	6	80	7	75	14	4	1	79	0.97
9309437--9309513	12	6.7	11	80	15	77	15	5	1	77	1.00
9309433--9309513	22	3.6	23	72	22	64	14	6	1	77	1.02
9309436--9309513	17	4.5	17	80	6	86	15	5	1	78	0.99
9309530--9309868	58	5.8	58	84	6	434	44	6	13	34	1.70
9316611--9316699	30	3.0	30	79	9	83	43	2	13	40	1.56
9321746--9321784	21	1.9	20	89	5	60	35	0	0	64	0.94
9330118--9330514	215	1.8	215	95	0	722	35	18	18	28	1.94
9337541--9337578	15	2.6	15	87	4	60	65	5	0	28	1.14
9346359--9346428	36	2.0	36	94	2	124	37	17	7	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9350100--9350167	33	2.1	33	100	0	136	20	5	36	36	1.77
9355255--9355289	17	2.0	18	88	5	54	22	20	8	48	1.76
9365953--9365982	15	2.0	15	93	0	51	56	0	43	0	0.99
9366060--9366085	2	13.0	2	100	0	52	50	0	0	50	1.00
9366805--9366854	22	2.1	24	82	10	59	46	2	48	4	1.32
9369746--9369775	2	15.0	2	100	0	60	50	0	0	50	1.00
9371996--9372074	29	2.6	30	78	8	88	24	21	32	21	1.98
9375605--9375667	2	31.5	2	100	0	126	50	0	0	49	1.00
9375848--9375889	22	1.9	22	85	0	57	59	0	2	38	1.10
9377022--9377086	24	2.7	24	79	11	78	44	1	1	52	1.19
9377266--9377308	17	2.7	16	89	10	70	51	2	0	46	1.13
9377473--9377538	26	2.6	25	84	13	89	45	1	3	50	1.26
9377699--9377765	7	9.0	7	81	12	80	16	0	2	80	0.83
9377699--9377765	15	4.5	15	81	10	75	16	0	2	80	0.83
9377699--9377762	22	2.8	22	83	4	83	15	0	3	81	0.82
9377749--9377856	31	3.2	34	78	14	116	30	4	0	63	1.20
9378709--9378824	10	11.6	10	72	17	64	24	1	3	70	1.12
9378765--9378825	5	11.8	5	80	16	63	16	3	0	80	0.84
9378764--9378818	6	9.8	6	88	4	64	16	3	0	80	0.86
9378842--9379014	63	2.7	63	87	1	240	44	5	11	38	1.63
9389472--9389546	13	5.8	13	77	15	75	76	0	14	9	1.03
9390578--9390918	41	8.0	43	80	6	261	24	14	19	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9390685--9390901	86	2.5	87	81	6	237	22	13	19	44	1.86
9391141--9391209	11	5.9	11	80	14	61	21	0	1	76	0.86
9391154--9391209	7	8.0	7	77	15	53	21	0	1	76	0.87
9391143--9391253	18	5.6	19	77	16	84	26	1	0	71	1.02
9391141--9391199	31	1.9	31	89	6	93	20	0	1	77	0.85
9391145--9391281	27	5.2	26	73	17	97	27	2	0	68	1.09
9391184--9391286	31	3.3	32	81	18	121	32	3	0	64	1.12
9391177--9391304	48	2.8	44	80	13	134	31	3	0	64	1.17
9391179--9391322	17	8.2	17	73	20	95	31	4	0	63	1.18
9391321--9391346	9	2.9	9	100	0	52	0	7	0	92	0.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100