genome.fa.s168.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  21  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4049305--4049393	17	4.9	17	75	16	72	79	2	4	13	0.97
4049366--4049405	18	2.2	18	90	0	62	82	2	2	12	0.87
4050326--4050365	11	3.5	12	75	25	50	62	5	5	27	1.37
4050303--4050365	22	2.9	22	86	9	76	66	4	4	23	1.30
4050468--4050564	6	16.2	6	75	10	56	73	2	3	21	1.08
4050499--4050535	3	12.7	3	83	16	51	70	0	2	27	1.01
4050470--4050565	13	7.4	12	74	19	61	73	2	3	20	1.07
4050897--4050956	1	60.0	1	76	0	57	0	1	10	88	0.59
4050888--4050930	18	2.4	18	88	0	59	2	2	9	86	0.76
4050891--4050956	22	3.0	22	84	8	89	1	3	9	86	0.74
4050900--4050956	21	2.5	23	86	11	82	0	1	10	87	0.61
4050966--4051133	41	4.1	41	86	6	207	36	22	17	23	1.95
4050968--4051140	42	4.2	42	87	4	226	34	23	16	24	1.95
4052129--4052194	23	3.0	21	74	24	55	7	13	0	78	0.94
4052134--4052175	17	2.4	17	85	14	59	9	11	0	78	0.96
4062545--4062815	57	4.7	58	80	5	273	37	12	6	43	1.67
4062830--4062918	30	3.0	28	78	15	92	77	2	7	12	1.07
4062827--4062905	17	4.8	17	69	20	53	78	2	6	12	1.04
4062870--4062916	17	2.9	17	78	6	53	78	2	6	12	1.02
4063443--4063494	17	3.1	17	97	2	97	65	11	5	17	1.44
4071835--4071865	16	1.9	16	93	0	53	51	0	0	48	1.00
4079244--4079276	16	2.1	16	88	11	50	21	9	0	69	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4079553--4079742	98	1.9	98	81	3	227	41	5	12	41	1.66
4081977--4082035	30	2.0	30	93	0	100	50	0	8	40	1.33
4081980--4082046	30	2.2	30	86	5	91	49	1	5	43	1.36
4088209--4088535	164	2.0	164	93	1	566	32	16	14	36	1.90
4095090--4095145	20	2.8	20	78	10	69	48	12	7	32	1.68
4095404--4095503	40	2.5	41	88	6	150	52	11	7	30	1.63
4095404--4095509	41	2.6	39	86	5	149	50	11	6	31	1.63
4095405--4095664	20	13.4	20	69	17	129	53	10	6	30	1.61
4095658--4095741	43	1.9	46	83	13	115	58	8	5	27	1.51
4096575--4096641	6	11.5	6	74	4	57	65	8	1	23	1.29
4096576--4096641	18	3.8	17	82	6	78	66	9	1	22	1.28
4096576--4096641	12	5.7	12	78	5	64	66	9	1	22	1.28
4097358--4097382	7	3.6	7	100	0	50	24	0	0	76	0.80
4099102--4099227	62	2.0	63	90	1	200	33	18	13	34	1.90
4099756--4099790	10	3.4	10	88	7	52	14	5	0	80	0.89
4099992--4100063	31	2.3	31	80	0	81	15	19	29	36	1.92
4101564--4101618	17	3.3	16	85	7	74	16	0	9	74	1.06
4101558--4101640	34	2.5	33	83	9	98	18	0	8	73	1.07
4110048--4110114	4	16.2	4	78	18	59	20	4	1	73	1.09
4110048--4110114	9	7.6	9	71	18	52	20	4	1	73	1.09
4110048--4110112	13	4.8	13	83	5	76	20	4	1	73	1.08
4110053--4110112	27	2.3	26	88	2	93	20	5	1	73	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4110103--4110166	26	2.5	26	97	0	119	31	0	9	59	1.29
4110219--4110289	28	2.6	27	71	18	67	53	2	2	40	1.30
4110275--4110563	56	5.1	56	74	12	218	49	5	6	38	1.52
4110275--4110562	112	2.5	112	75	8	296	50	5	6	37	1.52
4110357--4110628	56	4.8	57	75	11	166	48	5	8	36	1.58
4110476--4110674	60	3.4	60	80	6	176	48	7	9	34	1.63
4110665--4111478	426	1.9	425	83	4	1062	39	7	11	41	1.70
4113006--4113032	2	13.5	2	100	0	54	48	0	0	51	1.00
4123500--4123557	29	2.0	30	86	3	82	18	3	17	60	1.50
4123499--4123570	29	2.4	29	81	2	81	19	2	18	59	1.49
4131410--4131459	23	2.2	23	82	3	57	44	2	4	50	1.32
4132087--4132116	15	1.9	16	93	6	53	56	3	0	40	1.16
4135141--4135186	25	1.9	23	82	8	56	41	21	8	28	1.83
4136097--4136133	19	1.9	19	100	0	74	32	13	5	48	1.65
4136093--4136139	19	2.5	19	83	13	69	29	14	4	51	1.62
4137239--4137268	2	15.0	2	92	0	51	53	0	0	46	1.00
4139793--4139817	1	25.0	1	100	0	50	100	0	0	0	0.00
4142877--4142902	3	8.7	3	100	0	52	69	30	0	0	0.89
4149551--4149603	28	1.9	27	92	3	88	52	9	3	33	1.52
4154339--4154383	23	1.9	23	82	13	56	42	11	2	44	1.52
4154787--4154861	23	3.2	23	68	19	55	48	14	4	33	1.63
4166767--4166818	15	3.3	15	77	15	59	48	3	1	46	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4166732--4166843	33	3.3	34	74	13	104	46	7	7	39	1.59
4171341--4171376	12	3.0	12	95	0	63	33	13	0	52	1.41
4175912--4175942	2	16.0	2	93	6	55	48	0	0	51	1.00
4177231--4177277	3	15.7	3	100	0	94	34	0	0	65	0.93
4178050--4178226	22	8.0	22	77	3	110	37	8	9	44	1.67
4178050--4178213	44	3.7	44	76	4	127	37	7	9	45	1.64
4178384--4178439	22	2.5	22	79	0	67	35	8	5	50	1.57
4178374--4178446	22	3.3	22	76	1	65	38	9	5	46	1.60
4178719--4178772	22	2.5	22	87	0	72	42	11	9	37	1.73
4178711--4178785	22	3.4	22	77	3	62	41	10	8	40	1.69
4178804--4178870	11	6.1	11	77	5	64	41	13	4	40	1.64
4178804--4178870	22	3.0	22	86	0	89	41	13	4	40	1.64
4178816--4178879	22	2.9	22	85	0	74	40	14	4	40	1.66
4178901--4178948	22	2.2	22	84	0	60	39	8	6	45	1.59
4178997--4179059	22	2.8	23	69	7	58	33	9	7	49	1.64
4179187--4179341	66	2.4	67	81	8	185	34	9	6	49	1.60
4179046--4179430	22	17.6	22	70	12	141	36	9	5	48	1.61
4179234--4179539	44	6.9	44	71	10	194	36	8	5	49	1.56
4179113--4179503	22	17.9	22	70	9	154	36	9	4	49	1.57
4180700--4180728	2	14.5	2	100	0	58	48	0	0	51	1.00
4183207--4183231	13	1.9	13	100	0	50	84	0	0	16	0.63
4197097--4197143	23	2.0	23	100	0	94	8	17	23	51	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4199373--4199524	75	2.0	75	96	0	277	40	20	13	25	1.89
4201590--4201629	17	2.3	18	86	4	55	2	12	0	85	0.71
4203086--4203116	12	2.6	12	94	0	53	74	3	0	22	0.96
4207620--4207846	112	2.0	112	97	0	427	30	18	18	32	1.95
4208768--4208907	4	33.5	4	71	21	67	25	3	2	68	1.17
4208791--4208863	29	2.4	30	82	13	80	21	4	2	71	1.16
4208856--4208897	22	1.9	22	85	0	57	30	2	2	64	1.19
4209385--4209744	59	5.9	59	85	9	449	33	12	8	45	1.72
4209754--4209816	17	3.6	17	77	10	56	76	3	6	14	1.11
4209839--4209867	13	2.1	14	93	6	51	82	3	0	13	0.79
4209764--4209870	17	6.1	17	70	16	60	74	3	3	17	1.11
4209954--4210001	23	2.1	23	92	0	78	4	31	43	20	1.71
4210024--4210066	23	1.9	23	90	4	70	16	25	41	16	1.88
4210886--4210975	13	7.0	14	67	23	56	64	6	0	28	1.19
4211086--4211134	11	4.4	11	78	14	55	30	6	0	63	1.19
4211084--4211126	3	13.0	3	83	13	50	32	4	0	62	1.15
4211086--4211170	22	3.9	22	76	15	86	34	7	0	58	1.25
4211445--4211495	26	2.0	24	85	7	66	25	1	13	58	1.46
4211998--4212046	3	15.3	3	80	19	55	32	0	2	65	1.04
4211998--4212046	7	6.6	7	80	19	55	32	0	2	65	1.04
4211998--4212046	22	2.2	23	89	10	75	32	0	2	65	1.04
4212084--4212308	116	1.9	115	87	6	330	43	6	14	36	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4212097--4212309	58	3.7	57	86	9	299	41	6	15	36	1.73
4215504--4215534	15	2.1	15	100	0	62	22	25	6	45	1.76
4222741--4222792	12	4.5	11	80	9	52	76	0	13	9	1.01
4222746--4222804	23	2.7	22	86	5	75	76	0	15	8	1.01
4223796--4224329	43	12.5	42	84	6	605	26	14	20	39	1.91
4224484--4224562	7	10.9	7	73	11	61	21	1	1	75	0.94
4224489--4224558	21	3.5	19	78	19	72	21	1	1	75	0.96
4224501--4224580	4	19.5	4	70	27	53	23	3	1	71	1.10
4224496--4224701	7	27.9	7	69	25	65	27	4	1	66	1.23
4224535--4224701	52	3.2	49	71	20	94	28	5	1	64	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100