genome.fa.s168.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  44  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8228337--8228380	22	2.0	22	95	0	79	36	11	4	47	1.60
8230073--8230100	2	14.0	2	100	0	56	50	0	0	50	1.00
8230916--8230965	24	2.1	24	100	0	100	36	24	4	36	1.74
8231130--8231166	19	1.9	20	88	5	58	70	0	0	29	0.88
8231208--8231249	15	2.7	16	81	7	59	47	0	0	52	1.00
8231318--8231367	21	2.4	22	87	12	70	34	2	4	60	1.27
8232485--8232523	18	2.2	18	85	0	51	35	48	5	10	1.59
8233682--8233757	30	2.5	32	77	8	54	46	35	1	17	1.56
8233645--8233750	16	6.7	15	77	13	97	46	33	1	17	1.60
8233683--8233830	16	9.5	14	73	17	73	47	32	0	18	1.54
8234196--8234242	14	3.3	14	84	3	58	40	21	8	29	1.83
8235197--8235231	15	2.2	16	90	5	54	51	2	2	42	1.31
8235289--8235313	6	4.2	6	100	0	50	64	0	0	36	0.94
8235559--8235601	18	2.2	21	88	12	65	2	18	0	79	0.85
8238332--8238364	16	2.1	16	94	0	57	60	3	0	36	1.12
8242671--8242736	34	1.9	34	84	0	87	33	16	19	30	1.94
8242689--8242818	34	3.9	34	83	8	151	32	16	20	31	1.94
8242731--8242791	30	2.0	30	100	0	122	29	16	22	31	1.96
8243485--8243540	21	2.7	21	80	0	67	12	30	16	41	1.85
8243481--8243546	21	3.2	19	70	10	51	10	27	13	48	1.75
8250044--8250076	17	1.9	17	88	11	50	33	0	36	30	1.58
8250430--8250678	125	2.0	124	86	6	344	38	11	12	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8250435--8250724	125	2.3	125	83	8	324	38	12	12	37	1.80
8250520--8250860	187	1.8	185	82	3	443	36	12	12	38	1.81
8250735--8250980	125	2.0	125	82	2	305	36	13	14	35	1.85
8250836--8251428	188	3.1	186	79	5	622	37	12	11	38	1.80
8250435--8251165	312	2.3	312	81	3	828	37	12	12	36	1.82
8257444--8257492	19	2.7	17	82	14	62	10	8	0	81	0.87
8257663--8257725	32	2.0	31	81	3	72	41	0	1	57	1.08
8258112--8258139	14	2.0	14	100	0	56	42	0	14	42	1.45
8258693--8258748	27	2.1	27	96	0	103	48	16	3	32	1.63
8261079--8261103	12	2.1	12	100	0	50	24	32	8	36	1.84
8267784--8267809	10	2.6	10	100	0	52	11	0	7	80	0.89
8267811--8267962	68	2.2	71	77	15	169	22	5	4	67	1.32
8267987--8268032	15	3.1	15	78	9	58	17	4	2	76	1.06
8268903--8268965	17	3.8	16	77	12	65	14	9	1	74	1.13
8268904--8268975	5	13.8	5	72	21	51	15	6	1	76	1.06
8268912--8268976	27	2.5	25	80	11	78	15	7	1	75	1.10
8268940--8268976	12	2.9	13	80	19	51	16	5	0	78	0.93
8268994--8269227	59	4.0	60	86	8	320	43	9	11	35	1.74
8269027--8269123	30	3.2	32	63	24	82	42	9	13	35	1.76
8269170--8269198	15	1.9	15	100	0	58	55	10	0	34	1.34
8275901--8275944	8	5.2	8	86	10	61	75	0	13	11	1.06
8275901--8275944	18	2.6	18	89	7	65	75	0	13	11	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8276950--8277198	41	6.1	41	91	5	364	23	17	24	34	1.95
8277395--8277457	16	3.6	16	72	25	56	25	0	1	73	0.93
8277395--8277468	40	1.9	39	84	10	100	25	1	1	71	1.02
8277370--8277542	63	2.7	64	80	12	167	20	4	3	71	1.19
8277416--8277540	67	1.9	63	80	9	144	22	4	4	68	1.25
8277573--8277626	19	2.7	20	80	8	65	14	3	3	77	1.04
8277589--8277622	10	3.8	9	88	11	52	11	0	2	85	0.71
8278032--8278063	11	2.9	11	90	0	55	28	31	18	21	1.97
8278448--8278486	17	2.3	17	86	0	51	15	10	2	71	1.23
8278460--8278508	6	8.7	6	78	13	50	12	4	2	81	0.91
8278466--8278517	11	4.9	10	86	11	68	13	1	1	82	0.84
8278460--8278509	17	3.0	16	83	13	57	12	4	2	82	0.90
8278457--8278517	22	2.8	21	85	7	77	14	3	1	80	0.92
8278466--8278519	17	3.4	15	82	10	54	14	1	1	81	0.86
8278589--8278793	112	1.8	111	89	8	326	41	7	12	38	1.71
8280952--8281263	114	2.7	114	80	3	315	32	14	13	40	1.84
8281250--8281364	44	2.6	45	79	6	130	38	12	11	38	1.79
8281640--8281685	12	4.0	12	75	11	51	32	34	13	19	1.90
8282612--8282850	123	1.9	125	87	1	347	49	6	7	35	1.58
8282918--8282977	3	20.0	3	100	0	120	66	0	0	33	0.92
8282984--8283036	17	3.0	16	82	15	61	69	1	3	24	1.15
8287897--8287966	13	5.0	13	69	16	50	75	5	5	12	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8287736--8288073	171	2.0	168	94	1	595	62	10	8	18	1.52
8289094--8289135	20	2.0	20	86	4	57	78	4	9	7	1.08
8292639--8292786	53	2.8	53	86	2	201	26	27	7	39	1.83
8292822--8292863	11	3.8	11	87	0	66	50	26	0	23	1.50
8292822--8292864	22	2.0	22	95	0	77	48	25	0	25	1.51
8293186--8293213	2	14.0	2	100	0	56	50	0	0	50	1.00
8296123--8296206	43	2.0	43	95	0	150	17	7	19	55	1.64
8304332--8304453	46	2.6	47	81	11	144	64	5	7	22	1.40
8305089--8305138	22	2.3	22	92	0	82	34	12	6	48	1.65
8306830--8306859	2	15.0	2	100	0	60	50	0	0	50	1.00
8307866--8307901	15	2.5	14	86	4	54	72	0	0	27	0.85
8307933--8307971	13	2.9	14	80	7	53	46	0	0	53	1.00
8308054--8308100	23	2.1	23	88	11	71	31	2	4	61	1.27
8309817--8309861	11	4.3	10	81	18	56	11	11	0	77	0.99
8309819--8309860	21	2.0	22	90	4	68	11	11	0	76	1.03
8309817--8309878	32	1.9	33	90	3	99	12	11	0	75	1.04
8309864--8309906	18	2.5	17	88	11	61	25	2	0	72	0.97
8310048--8310093	24	1.9	24	83	16	60	36	2	0	60	1.09
8310236--8310260	13	1.9	13	100	0	50	0	12	0	88	0.53
8310240--8310274	15	2.3	15	90	0	52	2	5	2	88	0.68
8310777--8310813	18	2.2	17	90	9	58	5	10	0	83	0.79
8312697--8312757	27	2.3	26	81	13	72	37	1	0	60	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8312643--8312755	50	2.2	51	78	7	113	35	1	1	61	1.17
8312817--8312863	6	7.8	6	92	0	76	72	0	27	0	0.85
8314040--8314083	22	2.0	22	86	0	61	36	11	9	43	1.72
8318016--8318059	22	2.0	22	95	0	79	34	13	11	40	1.81
8331846--8331922	38	2.0	38	100	0	154	38	2	16	41	1.63
8339705--8339732	14	2.0	14	100	0	56	28	35	7	28	1.84
8350133--8350173	18	2.3	18	87	8	57	26	2	0	70	0.99
8351546--8351579	12	2.8	12	90	0	50	35	0	0	64	0.94
8351645--8351699	23	2.5	23	82	14	71	3	18	1	76	1.02
8352252--8352299	13	3.5	13	86	11	53	10	10	2	77	1.09
8352414--8352462	22	2.2	23	85	7	66	63	0	4	32	1.13
8352627--8352675	20	2.5	19	83	16	64	59	0	2	38	1.09
8352683--8352719	9	3.9	10	82	13	51	83	13	2	0	0.74
8352683--8352719	18	2.1	18	94	0	65	83	13	2	0	0.74
8352683--8352723	10	4.3	10	87	12	59	82	12	4	0	0.81
8353031--8353064	15	2.3	15	89	0	50	82	11	2	2	0.89
8354189--8354245	14	3.6	16	73	17	57	47	31	0	21	1.51
8354188--8354233	18	2.7	17	83	6	58	45	34	0	19	1.51
8360287--8360315	13	2.3	13	94	5	51	89	3	6	0	0.57
8360956--8361009	18	2.9	18	86	8	65	83	3	11	1	0.85
8360965--8361010	21	2.2	21	84	7	58	82	4	13	0	0.81
8362347--8362458	33	3.4	33	84	1	143	33	20	14	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8362381--8362538	80	2.0	80	84	3	210	32	20	14	32	1.93
8362272--8362571	113	2.6	114	88	5	421	31	20	14	33	1.92
8362462--8362734	33	8.3	33	86	3	363	28	20	17	33	1.95
8362462--8362958	66	7.8	66	76	11	434	28	19	17	34	1.95
8362462--8362958	99	5.2	99	80	12	535	28	19	17	34	1.95
8362717--8362753	19	1.9	19	100	0	74	40	10	10	37	1.75
8362684--8362786	52	2.0	52	92	0	170	32	15	15	36	1.89
8362736--8362958	33	6.9	33	82	7	262	28	19	17	34	1.94
8362651--8362819	85	2.0	85	89	2	259	30	18	16	34	1.93
8362623--8362846	118	1.9	118	93	1	387	29	17	17	34	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100