genome.fa.s168.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  52  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9566269--9566352	32	2.7	30	80	10	89	45	35	0	19	1.50
9566306--9566412	14	7.4	14	69	12	74	50	29	1	17	1.57
9566931--9566978	25	1.9	25	82	0	60	64	2	4	29	1.23
9579132--9579295	38	4.4	38	65	17	103	20	23	11	44	1.84
9579061--9579350	109	2.7	109	91	1	447	18	22	14	44	1.86
9579010--9579397	109	3.6	109	83	6	403	20	21	14	43	1.87
9580327--9580405	3	26.3	3	75	10	72	63	1	0	35	1.03
9581683--9581826	14	9.8	14	72	11	103	50	33	0	16	1.46
9581684--9581826	31	4.9	31	76	14	110	49	33	0	16	1.46
9581684--9581766	16	5.5	15	80	7	87	45	36	0	18	1.49
9581721--9581829	57	1.9	56	87	7	157	50	33	0	15	1.45
9581720--9581844	30	4.3	29	73	15	98	49	33	0	16	1.46
9582345--9582392	25	1.9	25	82	0	60	64	2	4	29	1.23
9585285--9585362	29	2.7	29	80	8	86	57	2	3	35	1.30
9586040--9586118	24	3.3	23	70	15	61	50	2	8	37	1.47
9590229--9590329	38	2.7	38	77	10	100	50	1	1	45	1.24
9590270--9590326	19	3.1	18	78	9	62	52	1	0	45	1.11
9594642--9594681	16	2.4	18	80	16	50	47	5	0	47	1.24
9596312--9596351	20	1.9	22	90	10	66	57	0	0	42	0.98
9596699--9596728	16	1.9	16	93	6	53	40	0	3	56	1.16
9596743--9596808	26	2.6	25	78	7	78	51	1	1	45	1.19
9596891--9596946	29	1.9	29	96	0	103	39	1	1	57	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9596895--9596971	29	2.6	29	85	8	93	44	1	1	53	1.17
9597140--9597185	22	2.1	22	83	0	56	41	2	0	56	1.11
9606689--9606746	27	2.2	25	81	6	71	36	12	41	10	1.76
9607421--9607457	17	2.2	17	95	4	67	37	0	13	48	1.43
9608285--9608326	21	2.0	21	95	0	75	45	11	19	23	1.83
9610382--9610428	24	2.0	24	86	0	67	55	6	10	27	1.58
9613586--9613614	2	14.5	2	100	0	58	51	0	0	48	1.00
9615937--9616834	161	5.5	161	79	5	808	31	10	15	42	1.80
9616021--9616834	323	2.5	323	81	2	938	31	10	15	42	1.80
9624771--9624805	10	3.5	10	84	0	52	28	8	8	54	1.60
9625324--9625760	216	2.0	216	96	0	802	35	18	9	36	1.84
9635271--9635338	34	2.0	34	100	0	136	32	23	17	26	1.97
9636088--9636293	57	3.3	64	88	5	275	39	10	6	43	1.65
9636088--9636295	64	3.4	64	86	6	238	38	11	6	43	1.65
9636024--9636311	57	4.8	58	75	12	231	37	11	6	44	1.67
9636328--9636410	6	14.5	6	77	13	70	78	2	3	15	1.00
9636328--9636476	11	12.8	11	70	17	81	74	3	3	18	1.10
9636332--9636398	21	3.0	21	87	10	89	76	1	4	17	1.04
9636328--9636397	5	13.6	5	80	14	72	78	1	2	17	0.94
9636926--9636957	15	2.2	15	94	5	57	68	18	0	12	1.20
9637232--9637460	8	26.9	8	63	26	57	65	2	3	27	1.24
9637233--9637387	27	5.6	30	71	18	111	64	2	4	28	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9637285--9637429	25	5.5	25	75	16	116	64	2	3	28	1.23
9637285--9637426	49	3.0	49	77	14	131	64	2	3	28	1.24
9637235--9637461	11	18.9	12	69	22	72	65	2	3	28	1.24
9637234--9637425	3	59.7	3	66	24	58	64	2	4	29	1.23
9637696--9637882	84	2.2	84	87	6	261	40	22	13	23	1.89
9637679--9638019	41	8.1	41	81	8	305	38	21	14	24	1.92
9637679--9638019	83	4.1	83	81	5	280	38	21	14	24	1.92
9637674--9638019	124	2.7	125	81	7	319	39	21	14	23	1.91
9639715--9639779	10	6.3	10	74	22	55	7	15	0	76	0.99
9639708--9639771	24	2.5	26	85	10	87	7	15	0	76	1.00
9639702--9639770	32	2.2	32	86	5	95	7	14	0	78	0.96
9639702--9639761	8	7.5	8	77	17	54	8	15	0	76	1.00
9639702--9639770	8	8.4	8	76	16	52	7	14	0	78	0.96
9639705--9639783	27	3.0	28	77	17	89	8	17	0	73	1.08
9646057--9646099	17	2.5	17	79	20	54	76	6	4	11	1.13
9647963--9648070	51	2.1	51	96	0	198	30	8	12	48	1.71
9647965--9648056	28	3.5	28	64	24	72	30	5	11	52	1.61
9650507--9650557	24	2.1	24	96	0	93	21	0	9	68	1.18
9651587--9651638	27	1.9	27	84	0	68	28	19	19	32	1.96
9653318--9653354	18	2.1	18	100	0	74	27	18	5	48	1.70
9654297--9654341	2	23.0	2	95	4	83	51	0	48	0	1.00
9655094--9655171	29	2.8	29	84	5	106	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9655085--9655180	28	3.4	27	73	23	74	53	0	0	46	1.00
9655984--9656095	32	3.5	32	71	2	91	47	6	6	40	1.54
9657445--9657493	21	2.4	21	78	18	59	36	0	0	63	0.95
9657502--9657556	25	2.1	26	90	6	85	45	0	1	52	1.11
9657516--9657562	17	2.8	17	74	3	51	53	0	0	46	1.00
9657510--9657565	25	2.2	26	81	9	62	48	0	0	51	1.00
9657643--9657681	21	1.9	20	89	5	60	38	0	0	61	0.96
9670351--9670382	3	11.0	3	93	6	57	31	0	0	68	0.90
9670782--9670896	49	2.3	50	82	5	135	42	20	7	29	1.80
9670909--9670937	15	1.9	15	100	0	58	68	3	6	20	1.27
9671018--9671130	49	2.3	49	84	1	138	43	18	5	32	1.73
9671271--9671381	33	3.4	32	73	14	84	50	12	17	19	1.77
9671330--9671495	33	5.1	33	75	6	124	51	13	15	19	1.76
9672723--9672771	23	2.2	23	78	7	57	8	10	4	77	1.10
9675377--9675426	21	2.4	21	77	9	57	58	20	2	20	1.50
9676082--9676134	24	2.2	24	86	6	72	71	3	5	18	1.21
9676992--9677083	18	5.1	17	70	16	69	32	2	2	63	1.19
9677040--9677083	17	2.4	19	88	11	74	31	2	0	65	1.05
9677333--9677372	9	4.7	9	77	22	50	82	0	7	10	0.84
9677318--9677364	17	2.8	17	81	15	62	85	2	4	8	0.81
9677320--9677372	25	2.2	25	86	3	72	84	1	5	7	0.82
9677384--9677471	39	2.3	39	97	0	167	30	26	21	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9678255--9678328	3	24.7	3	100	0	148	33	0	0	66	0.92
9678879--9678956	30	2.5	31	81	10	88	28	10	15	46	1.78
9678879--9678956	31	2.5	32	81	6	97	28	10	15	46	1.78
9685623--9685668	13	3.7	13	77	11	51	76	4	10	8	1.15
9685629--9685669	12	3.4	12	80	12	57	73	4	12	9	1.24
9685633--9685681	24	2.0	24	96	0	89	67	4	16	12	1.37
9691584--9691821	86	2.8	86	86	6	297	24	11	16	47	1.80
9691581--9691815	130	1.8	130	87	5	359	23	11	17	47	1.80
9691581--9691821	43	5.6	43	80	5	263	24	11	17	46	1.80
9691763--9691899	73	1.9	74	82	10	174	27	8	13	50	1.71
9691836--9691949	44	2.6	44	80	5	124	27	12	14	45	1.81
9692637--9692675	21	1.9	20	89	5	60	69	2	28	0	1.02
9694918--9695024	51	2.1	50	96	1	196	30	9	14	45	1.76
9697448--9697498	24	2.1	24	96	0	93	21	0	9	68	1.18
9700262--9700298	18	2.1	18	100	0	74	27	18	5	48	1.70
9700350--9700380	2	15.5	2	100	0	62	48	0	0	51	1.00
9701253--9701278	2	13.0	2	100	0	52	50	0	50	0	1.00
9702035--9702109	28	2.7	28	83	6	91	53	0	0	46	1.00
9702924--9703035	32	3.5	32	71	2	91	47	6	6	40	1.54
9704383--9704431	21	2.4	21	78	18	59	36	0	0	63	0.95
9704440--9704494	25	2.1	26	90	6	85	45	0	1	52	1.11
9704454--9704500	17	2.8	17	74	3	51	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9704448--9704503	25	2.2	26	81	9	62	48	0	0	51	1.00
9704581--9704619	21	1.9	20	89	5	60	38	0	0	61	0.96
9706971--9707010	2	20.0	2	94	0	71	50	2	0	47	1.14
9712820--9712854	2	17.5	2	100	0	70	0	48	0	51	1.00
9731079--9731143	18	3.6	18	77	12	71	47	12	6	33	1.66
9731386--9731489	20	5.1	20	74	13	68	51	9	6	31	1.60
9731407--9731478	21	3.5	21	77	11	76	54	6	6	31	1.54
9731385--9731489	41	2.6	41	82	0	129	52	9	6	31	1.60
9732168--9732210	18	2.4	18	80	0	50	44	16	16	23	1.86
9735029--9735069	16	2.6	16	84	11	57	2	21	0	75	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100