genome.fa.s168.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  18  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3440708--3440826	47	2.5	45	81	10	116	21	5	2	69	1.22
3440738--3440853	19	6.0	19	71	18	71	22	5	2	69	1.20
3441134--3441178	12	3.8	11	80	13	54	24	0	15	60	1.36
3441757--3441812	26	2.2	26	90	0	85	12	1	3	82	0.88
3441746--3441834	43	2.1	43	85	8	119	13	5	2	78	1.02
3441746--3441829	37	2.4	36	81	15	104	13	5	2	78	1.03
3441746--3441810	6	10.7	6	80	9	78	13	3	3	80	0.96
3441860--3442264	118	3.5	116	90	3	634	47	6	10	35	1.63
3441860--3442264	58	6.9	58	90	3	625	47	6	10	35	1.63
3445189--3445233	21	2.0	24	87	12	69	24	28	13	33	1.93
3447005--3447086	32	2.5	33	82	7	96	41	2	7	48	1.44
3447002--3447092	33	2.8	31	80	12	94	39	3	6	50	1.45
3447151--3447201	22	2.3	21	87	12	68	50	1	0	47	1.12
3463167--3463240	34	2.2	34	80	4	78	31	16	14	37	1.89
3466481--3466536	25	2.3	27	73	20	68	21	3	1	73	1.08
3467537--3467597	28	2.4	25	81	15	63	24	6	4	63	1.38
3470317--3470435	62	1.9	62	87	0	175	53	10	18	16	1.71
3470316--3470482	62	2.6	62	79	4	156	53	8	17	19	1.69
3470727--3470805	27	2.8	28	80	3	88	75	2	20	1	0.98
3470775--3470799	9	2.8	9	100	0	50	68	8	24	0	1.16
3470727--3470779	9	5.9	9	79	0	61	79	0	18	1	0.83
3471750--3471965	119	1.8	119	79	2	254	18	22	13	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3471630--3472156	120	4.4	119	74	7	352	18	22	13	45	1.84
3473072--3473117	21	2.2	21	84	3	58	17	8	19	54	1.68
3473349--3473375	2	13.5	2	100	0	54	51	0	48	0	1.00
3475515--3475561	22	2.0	24	84	8	62	38	2	0	59	1.09
3476980--3477027	23	2.0	24	84	11	64	47	20	0	31	1.50
3477120--3477295	53	3.3	53	75	7	196	40	19	3	35	1.71
3477270--3477320	20	2.6	19	81	9	66	47	13	3	35	1.62
3478272--3478313	19	2.2	19	83	8	50	73	2	0	23	0.94
3480318--3480371	27	2.0	27	92	0	90	20	11	3	64	1.40
3483369--3483621	127	2.0	129	89	4	397	43	12	17	26	1.85
3484530--3484597	33	2.1	33	94	0	118	55	20	2	20	1.56
3487265--3487338	32	2.3	32	90	4	114	13	16	14	55	1.70
3488637--3488676	20	2.0	21	85	5	55	35	7	0	57	1.27
3490320--3490345	11	2.4	11	100	0	52	30	0	0	69	0.89
3493221--3493293	3	24.7	3	85	2	76	57	0	34	8	1.28
3500567--3500597	7	4.4	7	100	0	62	45	0	0	54	0.99
3501146--3501232	23	3.6	25	76	14	78	55	2	2	40	1.25
3501265--3501306	21	2.0	22	90	4	68	61	11	9	16	1.55
3501338--3501362	3	8.3	3	100	0	50	32	0	0	68	0.90
3501379--3501410	11	2.9	11	90	0	55	59	0	0	40	0.97
3506662--3506712	21	2.3	23	86	10	79	50	0	0	49	1.00
3514714--3514789	39	1.9	39	97	0	143	43	21	7	27	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3524626--3524691	32	2.1	32	97	0	123	28	22	13	34	1.92
3527616--3527707	44	2.1	44	93	0	157	39	16	7	36	1.77
3528902--3528937	3	12.0	3	100	0	72	66	0	0	33	0.92
3530877--3530918	20	2.1	20	86	0	57	64	2	33	0	1.07
3532785--3532817	17	2.0	17	88	5	50	42	3	0	54	1.15
3533193--3533233	13	3.2	13	85	0	55	29	0	4	65	1.13
3537156--3537191	2	18.0	2	100	0	72	0	0	50	50	1.00
3542694--3542784	16	5.4	16	73	18	60	49	1	0	49	1.08
3542718--3542766	18	2.8	18	78	9	57	51	2	0	46	1.12
3542834--3542872	20	2.0	20	89	0	60	41	2	0	56	1.13
3542841--3542874	17	2.0	17	88	0	50	41	2	0	55	1.15
3543137--3543225	29	3.3	27	76	9	74	44	0	2	52	1.13
3543153--3543218	25	2.6	25	72	18	64	51	0	1	46	1.10
3543153--3543222	24	2.7	26	76	10	81	50	0	1	48	1.09
3543182--3543232	25	2.0	25	81	7	59	49	0	3	47	1.20
3543252--3543289	20	1.9	19	89	5	58	50	0	0	50	1.00
3543521--3543562	20	2.2	19	87	8	59	42	2	0	54	1.13
3543840--3543880	22	2.0	20	85	9	55	41	2	4	51	1.36
3543818--3543889	30	2.4	30	81	2	92	45	2	5	45	1.41
3546062--3546104	6	7.8	5	82	17	50	79	0	20	0	0.74
3546062--3546104	11	3.8	11	93	3	68	79	0	20	0	0.74
3546603--3546654	17	3.0	17	74	2	50	76	1	17	3	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3552173--3552223	20	2.5	21	87	12	79	50	0	0	49	1.00
3552981--3553024	22	2.0	23	90	4	72	50	0	2	47	1.13
3552982--3553059	26	3.1	27	75	15	78	50	0	2	47	1.15
3553118--3553150	16	2.1	16	88	5	50	54	0	0	45	0.99
3553195--3553254	25	2.4	25	76	13	61	55	0	0	45	0.99
3554704--3554734	11	2.8	11	95	0	53	87	0	12	0	0.55
3555660--3555804	52	2.8	50	83	6	173	28	13	5	52	1.62
3555827--3555860	11	3.1	11	86	0	50	52	23	0	23	1.47
3556266--3556301	8	4.2	8	86	13	54	52	0	0	47	1.00
3556389--3556414	12	2.2	12	100	0	52	46	0	7	46	1.31
3557029--3557075	24	2.0	24	86	0	67	51	0	2	46	1.13
3557523--3557568	22	2.1	22	84	8	58	36	8	4	50	1.53
3560489--3560525	3	12.3	3	94	0	65	2	32	0	64	1.07
3563344--3563419	34	2.2	34	83	0	89	47	7	3	40	1.51
3563553--3563597	23	1.9	24	90	4	74	57	0	2	40	1.11
3565425--3565453	14	2.1	14	93	6	51	58	0	0	41	0.98
3567151--3567181	14	2.2	14	94	0	53	54	0	3	41	1.16
3567495--3567663	84	2.0	84	97	0	320	39	13	5	42	1.67
3571099--3571152	21	2.5	22	90	9	92	57	0	0	42	0.98
3571518--3571542	13	1.9	13	100	0	50	52	24	0	24	1.48
3579045--3579122	39	2.0	39	97	0	147	43	21	7	26	1.80
3583716--3583751	17	2.1	18	89	5	56	38	0	5	55	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3589477--3589542	32	2.1	32	97	0	123	28	22	13	34	1.92
3593714--3593761	3	16.0	3	100	0	96	66	0	0	33	0.92
3598017--3598057	13	3.2	13	85	0	55	29	0	4	65	1.13
3607806--3607867	20	3.0	20	73	15	56	41	0	0	58	0.98
3610353--3610381	14	2.1	14	93	6	51	58	0	0	41	0.98
3610918--3610964	22	2.0	24	84	8	62	44	2	0	53	1.12
3612376--3612544	84	2.0	84	97	0	320	39	13	5	42	1.67
3631338--3631370	15	2.1	16	94	5	59	48	0	0	51	1.00
3631417--3631450	7	4.9	7	96	0	59	23	0	14	61	1.33
3634162--3634227	19	3.7	18	71	17	57	45	1	0	53	1.09
3634145--3634213	28	2.4	29	78	9	70	43	1	1	53	1.18
3634383--3634417	16	2.2	16	94	0	61	37	0	8	54	1.31
3636238--3636267	2	15.0	2	92	0	51	50	3	0	46	1.18
3637039--3637072	13	2.5	13	90	4	50	50	0	2	47	1.16
3638109--3638160	20	2.5	20	81	9	61	44	0	1	53	1.11
3638995--3639056	20	3.2	20	77	13	76	35	0	0	64	0.94
3638995--3639050	13	4.4	14	76	17	59	35	0	0	64	0.94
3638995--3639053	12	4.8	13	77	10	61	35	0	0	64	0.94
3643498--3643531	6	5.7	6	96	0	50	41	35	14	8	1.77
3643498--3643535	12	3.2	12	92	0	58	42	34	15	7	1.76
3645415--3645458	23	2.0	23	86	4	63	54	2	15	27	1.53
3646136--3646183	25	1.9	25	100	0	96	39	8	12	39	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3645935--3646355	214	2.0	215	97	1	790	42	4	10	42	1.60
3659091--3659120	2	15.0	2	92	0	51	50	3	0	46	1.18
3660332--3660365	11	3.1	11	86	0	50	82	0	17	0	0.67
3669896--3669925	15	2.0	15	93	0	51	36	16	0	46	1.47
3674361--3674391	4	7.8	4	100	0	62	25	0	0	74	0.82
3680650--3680702	25	2.1	25	100	0	106	69	18	7	3	1.28
3687399--3687466	27	2.7	26	78	14	79	47	1	0	51	1.09
3687415--3687466	26	2.0	26	85	7	70	44	1	0	53	1.11
3687644--3687682	19	2.1	19	95	0	69	56	0	5	38	1.22
3687678--3687722	14	3.2	14	77	0	54	60	0	0	40	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100