genome.fa.s168.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  65  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11850716--11850778	30	2.1	30	90	0	99	19	15	31	33	1.93
11850782--11851005	33	6.6	32	76	12	191	21	20	28	29	1.98
11850783--11851004	69	3.3	69	80	6	265	21	21	27	29	1.98
11852507--11852570	30	2.1	30	85	5	85	51	1	7	39	1.40
11853308--11853365	20	3.0	20	79	2	64	48	6	3	41	1.47
11853381--11853425	17	2.6	17	85	0	63	60	2	0	37	1.09
11853442--11853487	20	2.3	20	85	7	58	71	2	4	21	1.14
11853553--11853597	20	2.2	20	88	0	63	33	0	6	60	1.23
11853621--11853677	8	6.6	9	73	18	50	29	1	8	59	1.38
11853584--11853634	26	2.0	26	84	0	66	23	1	5	68	1.22
11853621--11853677	17	3.3	17	73	9	53	29	1	8	59	1.38
11853683--11853731	23	2.2	22	88	3	71	32	4	4	59	1.35
11853781--11853811	10	3.1	10	95	0	53	25	0	3	70	1.02
11853984--11854021	11	3.5	11	89	3	51	31	5	5	57	1.43
11853990--11854019	11	2.7	11	100	0	60	40	0	6	53	1.27
11855188--11855223	18	2.0	18	88	0	54	33	2	5	58	1.36
11855354--11855379	13	2.0	13	100	0	52	61	23	0	15	1.33
11856355--11856387	15	2.2	15	100	0	66	45	0	0	54	0.99
11857997--11858845	304	2.8	301	89	6	1229	33	11	8	46	1.69
11858660--11858797	70	2.0	70	85	5	190	36	10	8	44	1.69
11858607--11858846	127	1.9	126	88	6	367	35	10	8	45	1.69
11859253--11859298	19	2.3	20	81	3	58	26	19	30	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11859353--11859411	31	1.9	31	86	6	84	32	22	18	27	1.97
11859430--11859484	25	2.2	24	83	9	65	36	18	5	40	1.74
11859871--11859927	3	18.7	3	89	10	89	66	0	0	33	0.92
11860024--11860100	35	2.2	35	92	0	127	18	29	25	25	1.98
11860231--11860265	13	2.6	13	90	4	52	0	0	11	88	0.51
11860231--11860268	15	2.6	14	91	8	58	0	0	10	89	0.49
11860278--11860860	41	14.0	41	91	6	817	37	21	18	22	1.94
11860278--11860860	126	4.7	123	91	5	835	37	21	18	22	1.94
11861863--11861934	8	10.1	7	75	13	51	8	13	0	77	0.98
11861866--11861933	7	9.7	7	79	19	63	8	13	0	77	0.98
11862673--11863032	179	2.0	181	88	4	532	32	13	8	46	1.72
11862673--11863014	59	5.8	58	86	7	447	33	13	7	45	1.73
11862673--11863013	120	2.9	118	89	6	494	33	13	7	44	1.73
11863036--11863073	20	1.9	20	84	10	51	78	0	2	18	0.86
11863105--11863155	16	3.5	15	82	10	61	86	3	3	5	0.79
11863098--11863150	24	2.2	24	86	0	70	83	3	3	9	0.90
11864442--11864534	1	93.0	1	75	0	69	5	0	8	86	0.72
11864435--11864534	9	10.7	9	78	15	80	6	0	9	85	0.76
11864541--11865049	41	12.5	41	90	6	784	36	23	17	22	1.94
11864541--11865068	81	6.5	81	93	3	818	36	22	17	22	1.94
11866347--11866372	1	26.0	1	100	0	52	0	0	0	100	0.00
11870177--11870522	57	5.9	58	79	13	293	32	15	8	43	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11870177--11870505	120	2.8	114	81	10	344	32	15	8	42	1.77
11872808--11873637	305	2.7	300	88	8	1206	33	11	7	46	1.70
11872808--11873638	241	3.4	240	84	9	1041	33	11	7	46	1.69
11873455--11873646	67	3.0	67	80	13	222	34	10	8	46	1.68
11874675--11874731	3	18.7	3	89	10	89	66	0	0	33	0.92
11874829--11874904	35	2.2	35	90	2	118	18	30	25	26	1.98
11875033--11875067	13	2.6	13	90	4	52	0	0	11	88	0.51
11875033--11875070	15	2.6	14	91	8	58	0	0	10	89	0.49
11875079--11875657	83	7.0	84	87	9	816	37	21	18	22	1.94
11875079--11875657	41	13.9	42	89	6	816	37	21	18	22	1.94
11876677--11876733	8	7.8	8	83	13	70	8	12	0	78	0.95
11876678--11876732	7	7.7	7	81	16	60	9	12	0	78	0.97
11876684--11876734	15	3.3	15	75	5	57	9	11	0	78	0.97
11877472--11877811	119	2.9	119	90	4	503	33	13	7	44	1.73
11877472--11877820	178	2.0	178	89	4	533	33	13	8	44	1.73
11877472--11877812	59	5.8	58	86	8	447	33	13	7	44	1.73
11877894--11877944	23	2.2	23	85	0	66	82	3	3	9	0.93
11878272--11878316	20	2.3	20	80	3	56	26	20	24	28	1.99
11879215--11879317	10	10.0	10	74	19	61	7	0	8	83	0.81
11879228--11879320	1	93.0	1	75	0	69	5	0	8	86	0.72
11879217--11879320	9	11.4	9	82	12	72	6	0	8	84	0.77
11879216--11879319	8	12.6	8	79	16	72	6	0	8	84	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11879327--11879834	41	12.5	41	90	6	784	36	23	17	22	1.95
11879327--11879853	81	6.5	80	93	3	780	36	22	17	22	1.94
11881152--11881181	16	1.9	16	93	6	53	10	16	0	73	1.09
11881121--11881185	18	4.0	16	75	11	60	4	16	0	78	0.91
11884997--11885337	59	5.7	58	82	10	413	34	13	7	44	1.72
11884997--11885337	120	2.9	119	89	4	487	34	13	7	44	1.72
11884998--11885356	179	2.0	182	86	7	509	33	12	7	46	1.70
11885476--11885513	5	7.2	5	88	11	58	0	39	42	18	1.50
11885795--11885832	20	1.9	20	94	0	67	23	18	26	31	1.97
11885796--11885840	20	2.3	20	88	3	65	26	22	24	26	2.00
11885896--11885963	31	2.2	31	86	0	91	26	23	23	26	2.00
11886611--11886651	20	2.0	21	85	4	57	19	24	29	26	1.98
11893379--11893795	60	7.1	57	85	9	545	33	12	8	46	1.71
11893386--11893782	118	3.4	116	88	6	613	34	13	8	44	1.73
11893385--11893795	175	2.3	173	88	6	612	33	12	8	45	1.72
11894297--11894339	20	2.2	20	86	0	59	9	25	32	32	1.88
11895809--11895855	15	3.1	15	90	3	76	48	4	25	21	1.68
11899025--11899543	58	8.8	58	84	10	664	34	12	8	45	1.72
11899209--11899297	27	3.2	27	62	20	65	37	14	5	42	1.69
11899025--11899539	115	4.4	113	86	11	557	34	12	8	45	1.71
11899293--11899385	48	1.9	49	91	2	152	37	8	9	44	1.68
11899356--11899538	67	2.9	63	88	8	259	35	12	8	44	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11900058--11900119	31	2.0	31	87	6	90	29	19	20	30	1.97
11900589--11900643	3	19.3	3	82	14	55	72	0	0	27	0.85
11900580--11900633	19	2.9	19	89	10	78	74	0	0	25	0.83
11900606--11900643	13	2.8	13	92	4	58	71	0	0	28	0.87
11900739--11900814	34	2.2	35	95	2	136	17	30	25	27	1.97
11900754--11900813	15	3.3	19	66	31	51	18	31	26	23	1.97
11904716--11904783	30	2.3	29	78	12	75	19	7	25	48	1.74
11904964--11905035	30	2.4	30	86	2	92	18	12	13	55	1.69
11905111--11905139	9	3.3	9	95	4	51	0	6	0	93	0.36
11905653--11905783	42	3.1	42	89	0	217	20	15	38	25	1.91
11906433--11906582	16	10.1	16	67	20	53	28	2	4	64	1.24
11907550--11907688	10	13.8	10	69	17	74	19	5	2	73	1.12
11907608--11907675	19	3.3	21	76	15	54	14	5	1	77	1.02
11907627--11907675	19	2.7	18	78	9	55	14	4	2	79	0.97
11907551--11907675	46	2.7	47	79	10	141	20	4	2	73	1.10
11907656--11907699	23	1.9	23	86	9	63	15	9	0	75	1.05
11907707--11908005	60	4.9	60	81	11	349	47	6	12	33	1.68
11907708--11908009	124	2.5	122	91	4	495	46	7	12	33	1.69
11911880--11911916	7	5.1	7	87	6	56	86	0	13	0	0.57
11911882--11911971	8	11.0	8	75	16	51	82	0	12	5	0.83
11911880--11911918	9	4.1	9	83	9	51	87	0	12	0	0.55
11911883--11911920	13	3.0	13	85	14	53	86	0	13	0	0.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11911880--11911919	15	2.8	14	88	7	62	87	0	12	0	0.54
11911924--11911969	16	2.9	16	93	0	74	84	0	4	10	0.75
11911924--11911969	24	1.9	24	90	0	74	84	0	4	10	0.75
11911881--11911961	42	1.9	41	82	9	101	81	0	13	4	0.85
11913161--11913626	41	11.1	42	88	4	676	24	17	22	36	1.95
11913161--11913626	83	5.6	83	89	3	713	24	17	22	36	1.95
11913633--11913722	1	90.0	1	73	0	72	86	12	1	0	0.62
11913635--11913721	8	10.9	8	87	7	108	86	12	1	0	0.64
11913634--11913722	9	9.9	9	81	11	103	86	12	1	0	0.63
11913633--11913722	19	4.8	19	82	9	114	86	12	1	0	0.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100