genome.fa.s168.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  91  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15792391--15797869	181	30.7	180	73	8	3224	41	9	8	40	1.68
15793200--15797872	361	13.1	359	73	9	2799	40	9	8	41	1.67
15795359--15795394	18	2.0	18	88	0	54	27	5	13	52	1.63
15792730--15797861	718	7.2	710	72	11	2278	41	9	8	40	1.68
15797748--15798015	135	2.0	135	96	1	493	46	8	5	39	1.58
15798151--15798491	187	1.8	185	81	8	422	40	8	9	41	1.68
15798344--15798745	175	2.3	179	78	4	400	44	10	6	38	1.65
15797883--15801886	357	11.2	354	70	13	982	41	9	8	39	1.68
15797882--15798963	182	6.1	176	74	10	727	42	9	8	39	1.68
15799000--15801886	181	16.0	180	76	7	2301	41	9	8	40	1.68
15799731--15799762	16	1.9	17	93	6	57	43	12	0	43	1.42
15799000--15801868	538	5.3	535	78	6	2384	41	9	8	40	1.68
15799000--15801886	719	4.0	717	77	7	2407	41	9	8	40	1.68
15802087--15804674	358	7.2	358	74	8	859	40	8	9	41	1.69
15802254--15804882	181	14.7	178	74	9	922	40	8	9	41	1.69
15801907--15810018	542	15.0	531	71	11	3268	39	8	10	41	1.69
15803106--15810018	361	19.1	359	71	10	2398	39	8	10	41	1.69
15803106--15810012	181	38.2	180	72	9	3143	39	8	10	41	1.69
15805608--15810012	361	12.3	361	75	6	3146	39	8	10	41	1.70
15805189--15811620	723	9.1	716	74	9	3734	40	8	9	41	1.69
15809686--15810337	327	2.0	328	82	4	789	40	9	9	40	1.69
15810015--15811655	180	9.2	179	75	8	1212	41	8	8	41	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15810026--15811620	536	3.0	530	78	6	1312	41	8	8	41	1.65
15811647--15814697	181	17.0	181	77	7	2316	38	8	10	42	1.69
15811647--15814347	715	3.8	710	78	6	2212	39	7	10	42	1.69
15816138--15824774	181	47.6	179	73	10	4319	40	8	9	41	1.68
15816138--15824611	722	11.7	716	72	11	3334	40	8	9	41	1.68
15818386--15818661	140	2.0	140	81	1	320	46	6	7	39	1.58
15818674--15819018	180	1.9	177	80	5	399	38	7	10	44	1.67
15818526--15819039	177	2.9	175	75	5	476	40	6	9	42	1.64
15819136--15824774	902	6.3	891	76	7	4004	40	8	9	41	1.69
15824363--15824403	19	2.2	20	86	8	59	24	7	4	63	1.40
15826540--15826616	38	2.0	38	92	0	127	32	31	9	27	1.88
15832042--15840873	361	24.5	354	73	10	4527	39	8	9	41	1.69
15832057--15840871	181	49.0	179	74	9	5714	39	8	9	41	1.69
15836230--15836261	15	2.1	15	100	0	64	34	6	0	59	1.23
15840851--15840892	20	2.1	20	100	0	84	28	21	9	40	1.84
15841298--15842276	178	5.4	181	78	8	867	41	7	9	40	1.68
15841298--15845375	359	11.2	355	70	14	1067	40	8	9	41	1.68
15842431--15845376	180	16.4	181	76	7	2146	40	8	9	41	1.68
15842921--15845191	361	6.3	355	75	10	933	40	7	9	41	1.66
15847044--15850236	181	17.7	182	76	7	2289	39	7	10	42	1.68
15847796--15847831	18	2.0	18	88	0	54	50	2	11	36	1.53
15850265--15853084	181	15.7	181	76	7	2325	40	8	10	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15850269--15853083	718	3.9	714	78	7	2485	40	8	9	41	1.69
15853117--15856392	181	18.3	180	75	5	2416	41	10	8	39	1.70
15853117--15856392	540	6.1	536	75	8	2046	41	10	8	39	1.70
15853135--15856392	360	9.1	361	74	7	2117	41	10	8	39	1.70
15856236--15856268	18	1.9	17	88	11	50	42	6	3	48	1.43
15856251--15856516	144	1.8	144	84	3	365	40	9	7	42	1.64
15856251--15856535	143	2.0	144	83	3	360	42	8	7	41	1.63
15856072--15856685	325	1.9	323	81	4	745	40	9	7	42	1.66
15856395--15857588	180	6.7	177	77	7	932	40	10	7	40	1.69
15855924--15856894	505	1.9	503	82	5	1210	41	8	7	41	1.65
15855719--15857070	685	2.0	675	80	6	1525	41	9	7	41	1.66
15856438--15857253	353	2.3	356	79	8	881	41	10	7	40	1.67
15856560--15857521	534	1.8	532	80	7	1182	40	10	8	40	1.70
15856395--15857588	359	3.3	352	77	9	1095	40	10	7	40	1.69
15856560--15857588	533	1.9	533	80	8	1173	40	10	8	40	1.69
15857462--15857725	138	1.9	138	79	7	295	42	11	6	40	1.67
15858050--15859023	181	5.4	179	76	7	712	41	8	9	39	1.69
15858245--15859042	359	2.2	358	82	3	935	41	8	10	39	1.70
15858926--15859143	120	1.8	120	81	2	276	45	8	13	32	1.74
15859045--15859679	180	3.6	179	78	5	511	40	8	11	39	1.73
15859638--15859684	19	2.7	18	74	12	53	42	4	12	40	1.63
15860557--15860610	17	3.1	18	78	10	67	29	11	9	50	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15859709--15862344	181	14.7	179	75	8	1739	41	9	8	40	1.67
15859709--15862339	358	7.3	356	75	9	1715	41	9	8	40	1.67
15859695--15862326	895	2.9	885	77	7	2314	41	9	8	40	1.67
15862196--15862472	147	1.9	146	83	3	362	44	11	6	37	1.68
15862360--15863012	181	3.6	178	78	7	593	45	9	6	38	1.64
15862392--15863012	180	3.5	180	77	8	550	46	9	6	37	1.62
15864670--15865457	179	4.3	181	80	6	790	40	9	9	40	1.70
15864670--15865457	368	2.2	364	80	6	875	40	9	9	40	1.70
15865315--15865594	151	1.9	151	82	3	357	43	8	10	38	1.68
15865466--15867015	181	8.7	181	75	7	977	41	10	9	38	1.72
15865466--15868118	362	7.3	354	73	11	1423	41	10	8	39	1.71
15865466--15867018	538	2.9	534	81	5	1623	41	11	9	38	1.72
15866685--15868117	384	3.8	377	74	9	933	41	10	7	39	1.69
15867439--15868097	181	3.6	178	77	6	596	42	10	7	40	1.66
15868997--15873649	181	25.9	181	74	8	3131	39	8	10	41	1.69
15868997--15877954	362	24.6	357	70	12	3267	40	8	10	41	1.69
15873645--15874218	180	3.2	178	78	6	576	40	8	9	41	1.68
15874124--15874386	144	1.8	145	86	4	388	39	6	9	44	1.63
15874267--15877954	181	20.4	181	73	9	2269	40	8	10	40	1.70
15876098--15877696	357	4.5	361	77	8	1148	40	8	10	40	1.70
15877991--15879001	179	5.7	179	78	5	895	41	7	9	41	1.66
15879041--15880152	354	3.1	358	77	7	891	41	9	10	39	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15879009--15880272	181	7.1	179	77	8	1060	40	8	10	40	1.70
15880032--15880558	285	1.9	284	82	2	664	40	9	7	42	1.64
15879491--15880984	823	1.8	820	80	5	1818	41	8	9	40	1.68
15880310--15881325	181	5.7	178	78	5	888	41	7	9	41	1.67
15881262--15881391	66	2.0	66	83	6	165	37	6	15	40	1.74
15881545--15881586	20	2.2	20	82	4	50	42	4	0	52	1.22
15881638--15882650	358	2.8	354	78	5	1038	41	8	9	40	1.66
15881638--15882649	181	5.7	177	78	6	850	41	8	8	40	1.66
15882589--15882716	66	1.9	66	80	3	150	40	7	12	39	1.72
15882656--15883370	178	4.0	177	76	8	640	39	8	10	41	1.69
15882651--15883660	184	5.6	177	73	10	678	39	8	10	40	1.71
15883861--15883902	20	2.2	20	82	4	50	42	4	0	52	1.22
15883954--15884955	181	5.7	177	76	7	779	41	7	9	40	1.66
15883954--15884955	360	2.8	353	78	7	1041	41	7	9	40	1.66
15884963--15888113	181	17.6	178	75	7	2183	40	8	10	40	1.70
15886535--15888133	182	8.9	180	76	8	857	40	8	10	41	1.70
15885009--15888113	714	4.3	703	76	7	2265	40	8	10	40	1.70
15884961--15888113	358	8.8	356	74	9	2301	40	8	10	40	1.70
15888011--15888233	120	1.9	118	84	9	301	45	7	12	35	1.69
15888136--15888771	181	3.6	181	74	9	489	40	9	11	38	1.73
15888733--15888765	18	1.9	17	88	11	50	48	6	6	39	1.53
15889226--15889269	23	1.9	23	90	0	70	65	2	2	29	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15888791--15893666	181	27.1	180	75	6	3443	41	9	8	40	1.68
15888786--15893666	896	5.4	886	75	8	3125	41	9	8	40	1.68
15892785--15892812	14	2.0	14	100	0	56	50	7	7	35	1.57
15892888--15893666	180	4.3	181	76	8	505	41	9	9	39	1.70
15892810--15893666	182	4.7	182	74	9	523	42	9	8	39	1.68
15893609--15893728	62	1.9	62	88	3	179	38	14	7	40	1.74
15893430--15893896	243	1.9	244	82	3	584	42	10	6	39	1.66
15893674--15894358	181	3.8	178	76	8	600	43	9	6	41	1.63
15893674--15894357	361	1.9	361	82	6	850	43	9	6	41	1.62
15894557--15895124	301	1.9	301	81	5	682	39	9	7	43	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100