genome.fa.s168.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  85  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15130477--15130506	15	2.0	15	93	0	51	16	0	13	70	1.18
15131836--15131873	20	1.9	20	94	0	67	55	10	5	28	1.56
15131783--15132004	120	1.8	121	83	6	288	49	12	6	31	1.65
15132587--15132976	143	2.8	143	81	7	392	31	15	12	40	1.85
15140241--15140677	222	2.0	223	93	0	759	37	19	13	29	1.90
15141224--15141270	24	1.9	25	86	4	69	72	2	6	19	1.17
15143702--15143892	34	5.6	34	72	11	122	30	17	13	38	1.88
15143911--15144017	33	3.1	33	72	10	88	39	16	13	30	1.87
15143964--15144069	47	2.2	49	75	6	110	33	21	11	33	1.89
15144189--15144318	41	3.3	40	77	4	113	35	19	13	31	1.91
15144869--15144972	37	2.8	36	84	4	136	25	14	21	38	1.91
15144765--15145111	179	1.9	179	83	4	450	31	16	16	35	1.91
15145619--15146029	145	2.8	144	81	5	454	35	15	9	39	1.80
15154196--15154234	17	2.3	17	81	0	51	38	5	0	56	1.22
15155503--15155837	172	2.0	168	85	10	456	33	16	4	46	1.66
15156892--15156938	18	2.6	17	83	9	67	17	0	8	74	1.05
15156915--15156943	14	2.0	15	93	6	51	17	0	6	75	1.01
15162691--15162721	2	15.5	2	93	0	53	45	0	3	51	1.17
15165447--15165473	2	13.5	2	100	0	54	48	0	0	51	1.00
15166227--15166271	23	2.0	23	86	0	63	48	8	13	28	1.72
15173021--15173051	11	2.7	11	95	5	53	35	3	19	41	1.67
15174117--15174150	11	3.2	11	87	4	52	0	11	0	88	0.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15174536--15174657	37	3.4	37	76	6	133	31	14	23	30	1.95
15174678--15174795	37	3.2	37	88	4	161	36	10	14	38	1.80
15175540--15175586	18	2.6	18	82	0	67	38	14	25	21	1.92
15175679--15175740	26	2.4	26	74	15	65	29	14	14	41	1.85
15175808--15175882	32	2.3	32	79	0	87	36	9	17	37	1.82
15175905--15176139	127	1.9	127	84	1	319	34	9	18	37	1.84
15176112--15176200	37	2.4	37	83	10	112	30	6	24	38	1.81
15176030--15176257	122	1.9	119	82	2	285	32	10	19	37	1.86
15176358--15176467	32	3.4	32	69	14	82	32	7	21	38	1.81
15176564--15176642	33	2.4	33	80	2	86	32	6	18	41	1.76
15176631--15176950	134	2.4	132	82	6	356	31	9	18	40	1.81
15176709--15176818	34	3.3	32	76	9	114	30	7	17	44	1.76
15176635--15176885	67	3.7	68	74	7	208	30	9	18	41	1.82
15176707--15177488	303	2.6	299	80	7	765	30	9	19	40	1.83
15177102--15177242	32	4.3	32	74	11	99	31	8	21	39	1.83
15177102--15177291	33	5.8	31	71	11	96	31	9	20	38	1.84
15177110--15177343	98	2.4	100	77	11	223	31	11	20	36	1.88
15177383--15177478	33	2.9	34	71	6	88	34	11	16	37	1.85
15179453--15179511	29	2.0	29	86	0	82	16	3	5	74	1.13
15183517--15183596	38	2.1	37	84	6	99	31	8	20	40	1.83
15187769--15187815	23	2.0	23	84	8	60	19	4	23	53	1.63
15189277--15189435	80	2.0	80	87	0	228	46	0	14	38	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15196970--15197014	19	2.3	20	88	3	65	42	42	4	11	1.60
15197114--15197577	238	1.9	238	91	0	759	34	11	16	38	1.84
15199009--15199056	9	5.2	9	77	5	51	79	0	14	6	0.92
15199353--15199506	37	4.1	36	79	5	146	33	17	9	39	1.82
15199353--15199506	74	2.1	75	83	1	193	33	17	9	39	1.82
15201252--15201405	74	2.1	75	82	1	184	30	10	12	46	1.75
15201466--15201512	24	1.9	25	86	4	69	63	8	4	23	1.40
15201466--15201512	23	2.0	23	87	8	67	63	8	4	23	1.40
15201615--15201736	33	3.6	34	81	3	131	16	19	13	50	1.79
15201715--15201757	22	2.0	22	95	0	77	16	11	11	60	1.59
15201780--15201871	34	2.7	34	82	11	109	20	17	15	46	1.84
15201854--15202038	34	5.4	34	74	8	144	20	16	12	50	1.78
15201882--15202038	68	2.3	68	82	4	174	19	17	12	50	1.76
15201943--15202055	34	3.3	33	83	4	145	19	19	10	50	1.76
15201943--15202071	68	1.9	68	83	0	168	20	18	11	49	1.78
15201965--15202160	102	1.9	102	80	4	225	22	17	10	49	1.76
15201944--15202093	68	2.2	68	80	3	158	20	19	10	50	1.77
15215344--15216232	131	6.8	128	77	9	783	38	8	7	45	1.64
15215295--15216232	262	3.6	259	79	8	866	37	8	8	45	1.65
15215344--15216232	393	2.3	394	81	6	1043	38	8	7	45	1.64
15219718--15219759	21	2.0	21	100	0	84	23	23	4	47	1.70
15221274--15221338	34	1.9	33	84	9	87	49	9	12	29	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15222427--15222466	19	2.0	20	90	4	64	70	7	2	20	1.24
15222519--15222562	21	2.2	20	87	4	61	65	6	2	25	1.28
15222695--15222743	10	4.9	10	83	16	66	59	12	0	28	1.34
15222681--15222756	30	2.5	30	77	8	75	53	10	1	34	1.43
15222730--15222783	20	2.6	19	83	11	63	55	5	3	35	1.41
15222887--15222935	26	2.0	24	84	8	62	51	4	2	42	1.32
15222921--15222989	28	2.5	27	79	11	77	63	8	2	24	1.37
15223372--15223471	10	10.7	9	72	15	69	34	4	4	58	1.36
15223371--15223437	19	3.5	19	83	0	80	34	4	2	58	1.34
15223593--15223628	19	1.9	18	88	5	54	22	0	8	69	1.15
15223632--15223675	18	2.5	18	85	3	54	43	2	6	47	1.42
15223632--15223697	17	3.6	18	78	15	55	39	3	7	50	1.46
15224719--15224838	64	1.9	64	82	6	154	40	13	12	33	1.82
15225417--15225559	73	1.9	75	80	10	170	37	9	13	39	1.77
15225490--15225783	63	4.6	64	73	9	208	40	12	12	35	1.81
15225861--15225901	20	2.0	20	90	0	64	17	56	2	24	1.53
15230076--15230121	19	2.6	17	83	12	65	43	4	2	50	1.34
15230081--15230120	19	2.1	19	95	0	71	37	5	2	55	1.35
15233003--15233030	1	28.0	1	100	0	56	0	0	0	100	0.00
15233300--15233337	12	3.1	13	85	11	53	65	5	2	26	1.27
15234419--15234771	134	2.6	133	82	1	413	28	15	19	37	1.91
15237994--15238039	20	2.2	20	85	11	58	19	4	17	58	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15238602--15238636	16	2.2	16	94	0	61	31	14	11	42	1.81
15240113--15240186	21	3.6	21	81	1	69	27	25	24	22	2.00
15241106--15245585	180	24.9	179	73	10	2586	39	8	9	42	1.68
15241106--15247644	525	12.3	525	72	13	2626	39	8	10	41	1.69
15242334--15245610	182	18.1	180	72	10	1918	39	8	9	42	1.67
15245019--15245071	26	2.0	26	96	0	97	35	11	1	50	1.49
15245609--15246823	181	6.9	179	77	8	987	40	8	10	40	1.71
15245984--15246423	167	2.5	170	83	8	482	40	8	11	40	1.72
15245821--15246478	348	1.9	348	83	5	864	39	9	11	39	1.73
15246162--15247641	180	8.4	179	71	12	865	41	8	10	39	1.70
15247787--15248268	181	2.7	180	81	4	542	37	7	10	43	1.68
15248332--15251806	181	19.5	180	70	12	935	41	9	8	40	1.69
15249451--15252678	180	18.1	176	72	11	1228	41	9	8	40	1.69
15249298--15252678	359	9.5	352	74	9	2096	41	9	8	40	1.69
15252209--15253179	497	2.0	497	82	3	1204	41	10	8	39	1.70
15252685--15256123	181	19.2	177	71	11	967	42	9	8	39	1.69
15254505--15254852	180	1.9	179	82	5	425	44	7	8	38	1.65
15254106--15255026	361	2.5	357	80	7	945	43	8	8	38	1.67
15255116--15255153	16	2.5	15	87	8	58	60	7	0	31	1.25
15256579--15256869	151	1.9	150	81	4	352	39	11	7	41	1.69
15256730--15262948	181	35.0	179	73	10	3514	41	9	7	40	1.68
15258348--15259366	176	5.7	175	75	8	778	41	9	8	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15259459--15262954	359	9.8	353	73	10	1534	41	9	7	40	1.67
15261380--15261693	169	1.9	169	84	4	427	43	10	6	40	1.64
15262817--15263232	134	3.0	132	81	9	444	42	9	7	40	1.65
15263099--15264306	181	6.7	180	78	5	1170	41	9	8	40	1.67
15263135--15264306	358	3.2	353	78	5	1184	42	9	8	40	1.67
15264198--15264415	109	2.0	109	83	5	271	44	8	8	38	1.64
15264886--15265737	181	4.7	180	79	3	847	39	10	8	41	1.69
15268161--15273493	182	29.4	180	72	10	2745	42	9	8	39	1.68
15268931--15268963	18	1.9	17	88	11	50	42	12	6	39	1.67
15268967--15268995	13	2.2	13	100	0	58	13	13	24	48	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100