genome.fa.s168.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  22  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4224607--4224691	42	2.0	42	84	4	109	30	7	1	61	1.30
4225036--4225094	31	1.9	31	85	0	82	18	8	22	50	1.73
4225528--4225568	19	2.2	19	86	8	57	31	0	4	63	1.15
4225615--4225775	59	2.7	59	91	0	252	42	6	14	36	1.73
4228161--4228230	2	35.0	2	74	5	61	51	1	2	44	1.25
4228154--4228230	12	6.3	12	77	7	75	53	1	2	42	1.23
4228870--4228914	2	23.0	2	95	4	83	48	0	0	51	1.00
4231378--4231426	7	6.7	7	77	9	53	18	0	26	55	1.43
4231363--4231419	15	3.7	15	85	4	60	21	0	24	54	1.45
4231392--4231442	22	2.4	21	93	3	84	13	1	33	50	1.53
4231533--4231592	22	2.7	22	80	17	70	18	0	36	45	1.50
4231556--4231778	30	7.6	30	78	10	187	18	0	34	47	1.49
4231560--4231778	60	3.7	59	78	10	225	17	0	33	48	1.48
4231569--4231778	90	2.4	89	83	6	257	18	0	34	47	1.49
4231730--4231788	28	2.1	28	90	0	91	15	3	25	55	1.55
4231920--4231981	6	10.0	6	84	6	79	30	1	1	66	1.11
4231937--4231981	3	15.0	3	95	0	81	31	0	0	68	0.89
4232455--4232732	58	4.7	58	80	11	298	35	13	7	43	1.71
4232455--4232731	116	2.3	121	84	7	345	36	13	7	43	1.72
4232748--4232821	5	13.6	5	86	13	94	77	0	2	20	0.90
4232748--4232821	11	6.8	10	85	13	94	77	0	2	20	0.90
4232851--4232890	3	12.7	3	86	5	53	70	0	2	27	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4232851--4232908	15	3.5	15	78	17	53	72	0	3	24	1.00
4233778--4233832	3	16.3	3	80	17	56	61	0	3	34	1.13
4233779--4233841	14	4.5	13	79	16	65	60	0	4	34	1.18
4233778--4233832	7	8.2	6	81	16	56	61	0	3	34	1.13
4233784--4233898	11	10.5	11	73	15	69	61	0	6	31	1.26
4233770--4233910	17	8.1	17	73	14	101	63	0	5	30	1.23
4233733--4233841	21	5.4	21	78	13	113	59	0	6	33	1.23
4233785--4233860	21	3.8	20	85	5	64	60	1	5	32	1.27
4233775--4233898	42	2.8	44	74	18	112	62	0	5	31	1.24
4233775--4233841	32	2.0	31	78	16	64	61	0	4	34	1.16
4234138--4234570	43	10.0	43	77	12	431	41	19	13	25	1.88
4234138--4234570	84	5.0	85	84	8	511	41	19	13	25	1.88
4234138--4234570	173	2.5	170	88	6	611	41	19	13	25	1.88
4235566--4235607	9	4.6	9	88	5	66	4	9	0	85	0.72
4235566--4235607	19	2.3	18	91	4	66	4	9	0	85	0.72
4245884--4246149	133	2.0	133	97	0	505	39	13	12	33	1.83
4246089--4246385	58	5.1	57	82	9	352	37	12	7	43	1.69
4246088--4246385	116	2.5	118	86	7	403	37	12	7	43	1.70
4246381--4246427	5	9.0	5	84	13	60	78	0	4	17	0.90
4246380--4246428	16	3.1	16	80	19	66	75	0	8	16	1.03
4246456--4246489	3	11.7	3	93	6	61	70	0	0	29	0.87
4246447--4246502	17	3.2	17	83	16	71	67	1	0	30	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4246447--4246502	11	4.3	13	84	15	64	67	1	0	30	1.01
4246777--4246817	15	2.7	15	79	20	50	0	46	0	53	1.00
4246862--4246906	18	2.4	18	92	3	72	15	15	20	48	1.80
4247372--4247514	46	3.1	45	73	19	116	62	3	4	29	1.33
4247497--4247523	7	3.9	7	100	0	54	59	14	0	25	1.36
4247488--4247540	21	2.4	21	78	12	54	64	9	3	22	1.40
4248279--4248316	19	2.0	20	89	5	60	0	21	0	78	0.74
4248312--4248358	16	2.8	18	78	18	57	40	0	0	59	0.97
4249619--4249658	20	2.0	20	90	0	62	55	2	7	35	1.42
4250123--4250441	158	2.0	158	91	0	521	36	15	11	36	1.83
4249965--4251098	431	2.6	431	92	1	1835	38	12	10	39	1.77
4250554--4250872	158	2.0	157	86	6	448	36	12	11	38	1.80
4251087--4251142	2	28.0	2	78	7	60	50	1	3	44	1.29
4251779--4251803	2	12.5	2	100	0	50	48	0	0	52	1.00
4262210--4262248	3	13.0	3	100	0	78	33	0	0	66	0.92
4262453--4262710	128	2.0	128	96	3	473	36	10	10	42	1.73
4262887--4262961	22	3.5	22	74	5	73	38	9	4	48	1.54
4263196--4263304	44	2.5	44	74	5	105	36	7	9	46	1.64
4263173--4263527	22	16.4	22	66	10	95	36	9	8	46	1.67
4263769--4263816	11	4.4	11	76	10	53	35	14	2	47	1.56
4263762--4263892	66	2.0	66	80	3	147	39	10	4	45	1.60
4263776--4263917	22	6.5	22	80	9	121	40	7	6	45	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4263844--4263939	22	4.4	22	84	2	88	41	5	7	45	1.54
4263952--4263994	22	2.0	22	85	0	59	34	13	6	44	1.72
4263974--4264078	44	2.4	43	79	4	104	36	12	8	42	1.73
4264003--4264284	22	13.0	21	65	11	70	34	9	7	47	1.66
4264039--4264079	21	2.0	21	85	0	55	41	7	4	46	1.53
4264224--4264639	22	18.8	22	72	10	195	35	9	4	50	1.54
4264951--4265093	22	6.7	22	63	15	66	34	6	6	52	1.54
4265076--4265130	22	2.5	22	82	5	67	32	3	3	60	1.32
4265088--4265136	22	2.2	22	85	7	64	28	2	6	63	1.30
4265155--4265227	22	3.3	22	75	3	67	41	10	1	46	1.48
4268691--4268901	54	3.7	53	75	15	188	52	8	12	27	1.67
4272448--4272477	15	1.9	16	93	6	53	83	10	6	0	0.81
4272848--4272902	13	4.3	12	86	9	74	81	0	18	0	0.68
4272848--4272909	25	2.6	25	85	10	76	82	0	17	0	0.67
4272848--4272909	23	2.7	23	85	7	72	82	0	17	0	0.67
4272851--4272906	12	4.2	13	86	9	62	80	0	19	0	0.71
4272857--4272891	9	3.8	9	85	7	52	85	0	14	0	0.59
4272847--4272932	24	3.6	23	80	9	75	76	0	18	4	0.95
4274446--4274476	16	1.9	16	93	0	53	35	19	6	38	1.77
4274453--4274524	31	2.3	31	80	7	83	38	11	9	40	1.74
4274667--4275285	40	14.9	40	77	9	539	24	15	18	42	1.88
4274667--4275285	81	7.5	80	78	10	525	24	15	18	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4274667--4275288	121	5.0	120	79	10	592	24	15	18	42	1.88
4274977--4275228	131	1.9	130	85	4	346	25	16	17	40	1.90
4283650--4283688	17	2.3	17	86	0	51	41	12	12	33	1.82
4283660--4283697	17	2.2	17	90	0	58	36	7	13	42	1.73
4292007--4292056	23	2.2	23	82	7	57	26	2	0	72	0.96
4292038--4292078	17	2.4	16	88	8	55	4	9	0	85	0.73
4292054--4292089	12	3.0	12	91	0	63	0	13	0	86	0.58
4292054--4292084	11	2.8	11	95	0	53	0	9	0	90	0.46
4292038--4292085	16	2.8	17	81	12	55	4	8	0	87	0.66
4292038--4292085	14	3.4	14	77	11	53	4	8	0	87	0.66
4292236--4292290	23	2.4	23	96	0	101	25	20	25	29	1.99
4293081--4293113	15	2.2	15	89	10	50	27	0	0	72	0.85
4293196--4293583	202	1.9	201	82	10	479	44	7	11	36	1.69
4293569--4293599	12	2.6	12	94	0	53	74	3	0	22	0.96
4293817--4293853	19	1.9	19	88	0	56	81	2	2	13	0.92
4296139--4296339	100	2.0	100	96	0	366	38	15	19	25	1.92
4299476--4299547	36	2.0	36	100	0	144	36	8	11	44	1.70
4300637--4300676	2	20.0	2	84	0	53	52	0	2	45	1.14
4302409--4302510	39	2.6	40	85	4	145	6	26	45	21	1.77
4303302--4303340	17	2.2	18	90	4	62	0	0	17	82	0.68
4303299--4303338	21	2.0	20	90	5	62	0	0	17	82	0.67
4303470--4304588	46	24.2	45	90	8	1673	34	26	11	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4303475--4304635	321	3.6	315	86	9	1234	34	25	11	28	1.91
4317246--4317344	38	2.6	38	88	0	153	8	27	42	22	1.81
4318149--4318190	9	4.9	9	88	8	61	0	0	16	83	0.65
4318145--4318182	18	2.2	17	95	4	67	0	0	13	86	0.56
4318146--4318190	8	5.4	8	87	10	63	0	0	15	84	0.62
4318138--4318190	25	2.1	24	89	6	79	1	0	13	84	0.69
4318969--4319140	84	2.0	84	82	2	202	30	19	8	41	1.80
4322670--4322708	19	2.1	19	100	0	78	33	5	0	61	1.18
4323187--4323478	148	2.0	146	79	4	318	42	8	13	36	1.74
4324037--4324066	2	15.0	2	100	0	60	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100