genome.fa.s168.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  51  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9392213--9392276	29	2.2	30	78	13	71	20	4	1	73	1.09
9392220--9392275	6	9.8	6	82	9	57	17	5	0	76	0.96
9392226--9392285	5	11.4	5	83	13	68	18	3	0	78	0.89
9392226--9392284	9	6.2	9	73	23	50	18	3	0	77	0.90
9392304--9392458	58	2.7	58	93	0	274	44	4	12	38	1.63
9393198--9393247	25	1.9	27	88	8	77	32	2	0	66	1.03
9393770--9393834	25	2.5	26	77	22	82	55	0	1	43	1.09
9393773--9393827	26	2.1	27	90	10	87	58	0	1	40	1.09
9393802--9393842	15	2.6	16	84	3	57	53	0	2	43	1.13
9393802--9393867	16	4.4	15	75	11	55	51	0	3	45	1.16
9396254--9396287	6	5.5	6	86	6	50	26	0	2	70	1.01
9399026--9399070	19	2.4	19	84	0	54	75	4	2	17	1.07
9399664--9399712	22	2.3	21	86	10	64	61	0	2	36	1.08
9399673--9399720	22	2.2	23	85	10	66	52	0	4	43	1.20
9403701--9403773	21	3.7	20	76	8	69	58	1	0	39	1.06
9404627--9404673	22	2.1	22	100	0	94	29	19	17	34	1.94
9405370--9405394	1	25.0	1	100	0	50	100	0	0	0	0.00
9415596--9415642	14	3.1	14	80	16	58	2	2	10	85	0.78
9415922--9415969	18	2.6	19	86	3	55	10	2	10	77	1.09
9415930--9415969	18	2.2	18	90	0	62	12	0	10	77	0.99
9416072--9416134	28	2.2	28	88	5	92	42	14	15	26	1.86
9416224--9416282	26	2.3	26	85	2	75	54	0	1	44	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9417354--9417412	31	2.0	31	83	12	79	59	3	1	35	1.24
9418381--9419778	697	2.0	693	81	5	1629	36	12	13	37	1.83
9429197--9429958	119	6.4	119	75	6	422	19	19	14	46	1.84
9429197--9430067	120	7.3	119	76	6	631	19	20	14	46	1.84
9429195--9430063	357	2.4	355	79	5	889	19	20	14	46	1.84
9429197--9430075	238	3.7	238	78	3	664	19	19	14	46	1.84
9430853--9430890	20	1.9	20	89	10	60	26	5	13	55	1.59
9430982--9431043	19	3.2	19	79	2	70	41	16	11	30	1.83
9431253--9431335	19	4.3	20	70	22	70	18	4	1	75	1.04
9431256--9431335	29	2.7	29	72	16	92	18	5	1	75	1.06
9431416--9431450	18	2.1	17	89	10	54	48	11	0	40	1.39
9433866--9433931	26	2.6	26	83	4	82	51	0	3	45	1.16
9433900--9433989	17	5.8	15	68	19	51	51	1	2	45	1.21
9434295--9434321	14	1.9	14	100	0	54	44	7	0	48	1.31
9442289--9442794	164	3.1	163	84	5	508	44	11	9	34	1.73
9442373--9442794	164	2.6	164	88	4	636	45	11	9	33	1.72
9445739--9445769	11	2.8	11	100	0	62	19	0	29	51	1.47
9445794--9445950	52	3.0	52	85	3	201	42	8	22	26	1.82
9446442--9446546	52	2.0	51	85	5	140	35	8	31	24	1.86
9446611--9446647	18	2.0	19	89	5	58	37	8	29	24	1.84
9446863--9447019	52	3.0	52	87	3	201	42	8	21	26	1.82
9452978--9453228	80	3.2	79	83	1	322	44	22	8	24	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9454143--9454431	146	2.0	146	88	1	427	40	8	14	36	1.77
9462331--9462394	24	2.6	26	76	20	66	40	3	4	51	1.38
9462535--9462602	17	4.1	17	73	16	61	50	1	2	45	1.26
9463861--9463932	29	2.5	28	88	2	108	41	2	5	50	1.40
9464518--9464559	11	3.5	12	81	18	52	80	2	14	2	0.90
9465323--9465362	18	2.2	18	100	0	80	27	5	5	62	1.37
9468096--9468127	2	16.0	2	93	0	55	46	0	3	50	1.17
9468284--9468338	29	1.9	28	88	3	83	52	3	1	41	1.29
9468650--9468691	20	2.1	20	86	8	59	52	7	2	38	1.42
9476411--9476442	2	16.0	2	93	0	55	46	0	0	53	1.00
9489295--9489409	39	3.0	36	79	14	115	46	0	2	50	1.21
9489364--9489425	24	2.5	24	84	5	70	50	0	1	48	1.10
9489668--9489705	20	1.9	19	89	5	58	50	0	0	50	1.00
9489849--9489903	22	2.4	23	75	9	58	38	7	1	52	1.40
9499208--9499246	2	19.5	2	83	0	51	46	0	7	46	1.31
9503325--9503356	10	3.1	11	86	13	50	9	15	0	75	1.05
9504453--9504488	19	1.9	19	88	5	56	50	0	5	44	1.25
9510331--9510366	16	2.2	16	100	0	72	19	19	11	50	1.77
9511245--9511293	20	2.4	21	77	16	59	63	0	0	36	0.95
9511736--9511792	17	3.4	17	76	11	55	54	0	0	45	0.99
9511844--9511926	29	2.8	29	80	7	87	38	2	2	56	1.25
9512886--9512923	13	2.9	14	84	7	53	84	2	0	13	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9513250--9513292	19	2.3	18	76	7	50	55	2	0	41	1.12
9514169--9514205	18	2.1	18	89	0	56	32	0	10	56	1.34
9519574--9519657	3	29.3	3	78	9	70	64	1	0	34	1.02
9521090--9521174	16	5.5	16	70	12	70	45	34	0	20	1.51
9521091--9521172	32	2.7	31	81	7	96	46	32	0	20	1.51
9521128--9521234	14	7.4	14	70	13	83	51	28	0	18	1.53
9521266--9521367	8	13.8	8	69	22	64	50	37	0	11	1.39
9521261--9521367	29	3.7	28	84	8	151	51	37	0	11	1.38
9524881--9524916	15	2.6	13	87	12	54	69	0	0	30	0.89
9525390--9525453	26	2.5	26	87	5	87	48	1	1	48	1.20
9525425--9525486	16	3.7	17	75	14	58	51	0	1	46	1.10
9525538--9525593	29	1.9	29	96	0	103	39	1	1	57	1.20
9526112--9526196	38	2.4	38	78	9	99	62	1	1	35	1.11
9527879--9527910	15	2.1	15	94	0	55	15	0	28	56	1.40
9527931--9528280	29	12.1	28	75	9	217	20	1	30	48	1.57
9527946--9528050	14	7.2	14	74	12	86	17	0	29	52	1.51
9527930--9528053	44	2.8	42	75	18	117	17	0	29	51	1.51
9528017--9528058	21	2.0	22	85	4	59	14	0	35	50	1.43
9527967--9528280	57	5.4	56	76	10	201	19	1	31	47	1.58
9528558--9528583	12	2.2	12	100	0	52	23	0	0	76	0.78
9530014--9530062	22	2.2	22	88	0	71	26	22	24	26	2.00
9530034--9530107	22	3.4	22	73	3	69	29	18	24	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9530174--9530246	22	3.3	22	82	0	74	35	16	19	28	1.93
9530212--9530261	22	2.3	22	85	0	64	34	18	18	30	1.94
9530034--9530378	154	2.2	155	79	3	358	37	17	20	23	1.94
9530326--9530371	22	2.1	22	87	0	65	28	19	23	28	1.98
9530234--9530599	110	3.3	108	81	4	394	40	17	19	22	1.91
9530459--9530711	134	1.9	134	88	3	384	40	17	19	22	1.92
9530349--9530800	244	1.9	244	81	1	557	40	16	20	22	1.91
9530606--9530813	110	1.9	110	83	2	274	37	17	22	22	1.93
9530715--9530888	88	2.0	88	83	0	222	40	14	21	22	1.91
9530880--9530924	22	2.0	22	91	0	72	33	15	22	28	1.95
9531288--9531368	41	2.0	41	90	0	126	30	13	18	37	1.90
9532798--9532839	22	2.0	21	85	4	57	7	4	4	83	0.91
9537536--9537560	13	1.9	13	100	0	50	68	0	8	24	1.16
9539480--9539563	14	5.9	15	72	9	59	21	0	27	51	1.48
9539488--9539651	29	5.7	28	70	9	114	19	1	31	48	1.57
9539511--9539652	58	2.5	57	81	5	169	19	1	30	47	1.58
9539664--9539738	13	5.4	13	71	14	60	21	0	29	49	1.50
9539524--9539831	29	10.5	28	71	17	144	22	0	29	47	1.58
9539671--9539804	64	2.0	65	84	7	173	23	0	29	46	1.58
9539792--9539832	13	3.2	13	89	0	64	26	0	21	51	1.48
9540097--9540144	3	14.3	3	87	12	51	31	2	0	66	1.03
9540928--9540957	14	2.2	14	94	5	53	6	6	10	76	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9541681--9541717	16	2.2	18	81	18	53	48	0	0	51	1.00
9543678--9543715	11	3.5	11	96	0	67	0	23	0	76	0.79
9553057--9553159	38	2.6	41	76	11	108	48	1	2	46	1.28
9553103--9553159	19	3.1	18	78	9	62	52	1	0	45	1.11
9556142--9556207	26	2.6	25	78	7	78	51	1	1	45	1.19
9556190--9556253	20	3.4	18	77	12	58	51	1	0	46	1.10
9556289--9556344	29	1.9	29	96	0	103	39	1	1	57	1.20
9556293--9556371	29	2.7	29	86	7	97	43	1	1	54	1.16
9564744--9564827	3	28.3	3	77	7	73	61	2	0	35	1.09
9566268--9566352	16	5.5	16	72	12	79	45	35	0	18	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100