genome.fa.s168.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  24  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4481099--4481167	21	3.3	21	76	8	77	44	15	5	33	1.71
4481106--4481271	21	8.0	21	68	8	70	46	15	4	33	1.67
4486870--4487150	141	2.0	140	85	3	366	28	19	19	33	1.96
4489845--4489888	22	2.0	23	86	13	65	4	13	18	63	1.46
4494005--4494050	17	2.7	17	86	0	65	45	2	0	52	1.13
4495227--4495261	18	1.9	18	94	0	61	68	5	0	25	1.11
4498909--4498959	22	2.3	22	80	6	59	43	17	0	39	1.49
4498932--4498976	22	2.0	23	82	4	56	40	15	2	42	1.59
4499018--4499048	11	2.8	11	95	0	53	48	9	9	32	1.69
4499587--4499895	153	2.0	154	87	3	453	41	7	4	45	1.54
4502815--4502882	22	3.1	22	77	8	75	50	7	5	36	1.55
4502862--4502917	11	5.1	11	73	16	53	57	1	7	33	1.37
4502857--4502919	22	2.9	22	79	9	74	58	3	6	31	1.39
4502945--4503048	22	4.8	22	67	15	63	56	6	3	32	1.43
4503075--4503135	22	2.8	22	79	0	68	52	6	4	36	1.49
4503531--4503611	22	3.6	21	69	19	56	41	4	12	40	1.64
4503671--4503733	22	2.8	23	72	13	60	49	7	9	33	1.64
4503672--4503757	44	2.0	44	83	0	109	50	8	6	34	1.59
4503770--4503848	22	3.6	22	74	3	79	44	3	12	39	1.61
4503894--4503936	22	2.0	22	86	9	61	51	4	6	37	1.50
4504920--4504964	3	15.0	3	81	9	56	33	2	2	62	1.20
4504980--4505005	3	8.7	3	100	0	52	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4510403--4510429	3	9.0	3	100	0	54	66	0	0	33	0.92
4510549--4510574	13	2.0	13	100	0	52	53	23	0	23	1.46
4510763--4510833	28	2.6	26	74	12	61	53	23	1	21	1.54
4527449--4527751	150	2.0	149	98	0	579	40	20	12	27	1.87
4528003--4528071	25	2.8	24	80	10	77	34	5	17	42	1.73
4528001--4528074	24	3.0	23	77	11	76	33	6	17	41	1.76
4529693--4529743	11	4.7	11	74	11	52	64	0	0	35	0.94
4529692--4529743	22	2.4	21	87	6	77	63	0	0	36	0.95
4530863--4530921	11	5.9	10	77	18	61	61	1	0	37	1.07
4531127--4531159	17	1.9	17	100	0	66	27	6	12	54	1.60
4532729--4532781	27	2.0	27	88	3	81	58	11	1	28	1.43
4532721--4532787	27	2.4	28	74	20	68	61	8	1	28	1.35
4532751--4532801	21	2.4	21	86	0	75	56	7	0	35	1.28
4532857--4532921	21	3.0	21	82	15	71	49	7	4	38	1.52
4533035--4533158	47	2.6	47	83	8	144	50	5	8	36	1.56
4533077--4533124	20	2.3	21	89	7	80	52	4	8	35	1.51
4533098--4533151	27	2.0	27	92	0	90	51	3	5	38	1.43
4533124--4533198	21	3.6	21	79	0	69	48	14	4	33	1.63
4533071--4533171	48	2.1	47	83	5	123	53	6	4	34	1.49
4533291--4533353	21	3.0	21	75	15	67	53	7	1	36	1.40
4533266--4533353	42	2.1	42	84	0	113	50	7	4	37	1.52
4534807--4534836	14	2.1	14	93	0	51	3	23	6	66	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4536612--4536656	21	2.2	21	84	7	58	55	0	2	42	1.12
4537366--4537413	24	2.0	24	87	0	69	27	25	10	37	1.88
4539145--4539198	22	2.5	22	75	0	54	59	1	7	31	1.36
4539188--4539294	11	9.3	11	67	21	51	51	3	3	41	1.38
4539215--4539352	22	6.3	22	69	16	63	49	4	3	42	1.40
4539700--4539771	21	3.4	21	73	3	63	52	8	5	33	1.55
4539819--4539860	21	2.0	21	90	4	68	45	11	7	35	1.69
4541420--4541446	14	1.9	14	100	0	54	37	14	11	37	1.82
4546859--4546991	34	3.9	34	82	4	160	35	9	18	37	1.82
4571485--4571555	15	4.7	14	72	10	52	19	1	28	50	1.56
4573190--4573248	26	2.3	26	84	0	73	20	16	28	33	1.95
4573291--4573333	3	14.3	3	100	0	86	34	0	0	65	0.93
4574315--4574348	5	6.8	5	90	9	52	14	2	0	82	0.79
4574316--4574384	16	4.5	15	74	13	61	17	5	1	75	1.07
4574511--4574543	17	2.0	17	88	5	50	57	9	0	33	1.30
4576764--4576811	23	2.1	23	84	7	62	54	8	0	37	1.31
4576777--4576829	23	2.3	23	84	9	65	54	3	0	41	1.18
4576815--4576849	10	3.5	10	88	11	54	62	0	0	37	0.95
4576804--4576850	10	4.5	10	82	15	51	63	0	0	36	0.94
4576883--4576915	3	11.0	3	100	0	66	66	0	0	33	0.92
4576884--4576940	6	8.4	7	88	7	59	66	1	1	29	1.12
4578327--4578448	60	2.1	59	93	1	208	36	11	5	46	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4582731--4582759	5	6.0	5	92	8	51	20	0	0	79	0.74
4586448--4586497	24	2.1	24	84	0	64	34	12	36	18	1.87
4600194--4600235	21	2.0	21	85	4	57	33	21	11	33	1.90
4602546--4603476	330	2.8	331	86	3	1230	36	15	12	36	1.85
4604567--4604649	42	2.0	42	80	0	94	50	13	9	26	1.72
4604951--4605036	44	2.1	42	82	10	106	38	8	4	48	1.54
4607622--4607694	27	2.9	27	80	15	77	13	1	31	53	1.49
4607645--4607684	19	2.0	20	85	4	55	12	0	30	57	1.36
4607685--4607857	28	6.0	29	75	11	135	19	1	30	49	1.56
4607803--4607851	14	3.4	14	83	10	62	18	0	26	55	1.43
4607784--4607842	16	3.9	16	76	10	61	16	0	30	52	1.44
4607685--4607969	29	9.9	29	69	12	108	21	2	28	47	1.63
4607715--4607936	88	2.6	85	80	5	223	21	2	30	45	1.65
4607917--4607983	14	4.8	14	78	8	66	22	2	22	52	1.61
4607917--4607984	13	4.9	13	74	12	55	23	2	22	51	1.61
4612047--4612128	22	3.8	21	77	3	83	40	10	3	45	1.57
4612142--4612227	44	2.0	44	85	0	118	32	8	10	48	1.67
4612141--4612239	22	4.5	22	71	12	78	32	8	9	50	1.63
4612141--4612239	44	2.3	43	82	5	117	32	8	9	50	1.63
4612199--4612388	22	8.6	22	69	8	109	36	8	5	49	1.57
4612333--4612401	21	3.3	21	72	11	61	36	7	5	50	1.54
4612764--4612845	22	3.8	22	77	4	69	36	6	3	53	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4612847--4613031	22	8.5	22	70	14	98	34	7	4	54	1.49
4612917--4612946	14	2.1	15	93	6	53	30	0	6	63	1.20
4612977--4613032	11	5.1	11	74	8	51	35	7	1	55	1.38
4612977--4613083	22	4.9	21	82	6	90	37	7	3	51	1.48
4612847--4613047	66	3.1	66	76	5	158	34	7	4	53	1.51
4614029--4614078	6	8.0	6	88	4	73	18	2	2	78	0.95
4614019--4614082	26	2.5	24	74	20	67	20	1	1	76	0.95
4614022--4614078	12	4.7	11	81	12	51	19	1	1	77	0.95
4614029--4614085	20	2.9	19	80	12	71	19	1	1	77	0.95
4614056--4614113	3	18.7	3	78	7	55	27	0	1	70	0.97
4614030--4614160	38	3.5	37	74	14	92	24	2	3	69	1.17
4614202--4614249	21	2.4	19	75	21	53	31	6	2	60	1.33
4614701--4614750	20	2.5	20	86	0	73	30	24	14	32	1.94
4614950--4614975	10	2.6	10	100	0	52	26	42	30	0	1.56
4615065--4615162	4	23.0	4	75	19	58	22	4	2	71	1.13
4615065--4615162	9	11.5	8	71	19	58	22	4	2	71	1.13
4615065--4615121	17	3.3	18	83	11	66	26	1	3	68	1.15
4615083--4615162	14	5.8	14	70	16	60	22	3	1	72	1.08
4615083--4615150	11	6.6	10	68	18	50	23	2	1	72	1.07
4615122--4615163	17	2.5	17	85	14	61	16	7	0	76	1.00
4615199--4615481	60	4.7	59	87	6	410	44	8	14	32	1.74
4615199--4615481	119	2.4	118	93	3	478	44	8	14	32	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4620611--4620693	42	2.0	42	100	0	166	26	16	22	33	1.96
4620746--4621076	42	8.0	42	87	5	428	22	19	22	36	1.95
4620746--4621076	83	4.0	83	84	9	431	22	19	22	36	1.95
4621083--4621179	8	12.6	8	79	16	116	86	13	0	0	0.57
4621084--4621179	31	3.2	30	86	7	140	86	13	0	0	0.57
4621086--4621178	45	2.1	45	94	6	163	86	13	0	0	0.58
4621083--4621179	1	97.0	1	75	0	77	86	13	0	0	0.57
4621086--4621179	22	4.2	21	84	15	127	86	13	0	0	0.58
4621086--4621178	44	2.1	44	94	6	161	86	13	0	0	0.58
4621355--4621404	6	8.0	6	88	4	73	18	2	2	78	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100