genome.fa.s168.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  57  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10464016--10464145	39	3.3	39	71	12	120	34	6	16	43	1.73
10463931--10464140	81	2.6	79	83	9	262	38	8	11	41	1.72
10468103--10468148	21	2.2	21	84	0	56	23	4	10	60	1.47
10468199--10468250	20	2.6	20	84	0	68	26	23	9	40	1.85
10468731--10468759	13	2.1	14	93	6	51	31	13	13	41	1.84
10469095--10469123	15	2.0	15	93	6	51	31	6	13	48	1.69
10471105--10471175	24	3.0	24	85	4	81	22	16	23	36	1.94
10471549--10471610	24	2.7	22	77	5	61	32	3	19	45	1.66
10471533--10471651	46	2.6	46	78	6	123	36	4	16	42	1.68
10471838--10471933	17	5.6	17	80	2	88	38	20	5	35	1.75
10471824--10471924	34	3.0	33	76	5	94	39	18	3	37	1.70
10471923--10471956	17	2.0	17	88	0	50	32	14	17	35	1.91
10471978--10472037	18	3.4	17	80	15	68	33	11	11	43	1.77
10471977--10472080	35	2.9	35	80	8	95	32	13	14	39	1.85
10472024--10472119	35	2.8	35	80	1	104	33	16	17	32	1.93
10472098--10472143	17	2.6	17	86	3	56	30	10	17	41	1.84
10475704--10475762	3	20.0	3	89	3	93	67	1	0	30	1.00
10475798--10475846	10	4.9	10	94	0	89	59	0	2	38	1.09
10475704--10475846	15	9.1	15	76	9	92	57	4	2	35	1.32
10475704--10475846	20	6.8	20	73	10	92	57	4	2	35	1.32
10476425--10476490	34	1.9	34	87	0	96	39	10	9	40	1.71
10476714--10476940	77	2.9	77	80	7	219	40	11	16	31	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10476820--10477030	110	1.9	110	85	6	295	38	11	16	33	1.85
10477948--10477989	16	2.4	18	80	11	52	0	11	4	83	0.79
10478014--10478051	17	2.2	17	86	9	51	7	23	0	68	1.16
10481267--10481346	42	1.9	42	89	0	124	63	3	10	22	1.41
10482245--10482287	19	2.3	19	92	4	70	81	2	0	16	0.79
10483048--10483102	27	2.0	27	89	0	83	70	1	3	23	1.12
10483050--10483103	6	9.0	6	85	0	54	68	1	3	25	1.16
10483102--10483133	3	10.7	3	100	0	64	34	0	31	34	1.58
10483172--10483211	5	8.0	5	88	0	53	52	7	0	40	1.30
10485084--10485109	10	2.6	10	100	0	52	7	19	30	42	1.79
10486352--10486376	12	2.1	12	100	0	50	0	0	8	92	0.40
10487503--10487540	2	19.0	2	100	0	76	0	50	0	50	1.00
10487546--10487597	6	8.7	6	84	0	50	11	0	48	40	1.40
10487549--10487597	8	6.6	8	81	13	52	12	0	48	38	1.41
10487546--10487598	14	3.8	14	82	0	61	13	0	47	39	1.43
10488338--10488381	18	2.5	18	81	3	54	75	11	2	11	1.15
10488350--10488408	23	2.5	24	83	5	66	79	8	5	6	1.04
10488692--10488719	13	2.2	13	100	0	56	92	7	0	0	0.37
10492337--10492370	4	8.5	4	93	0	59	70	0	2	26	1.01
10496958--10496989	12	2.7	12	100	0	64	40	0	0	59	0.97
10498348--10498431	44	1.9	44	85	0	114	29	20	8	41	1.81
10499861--10499890	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10500871--10502026	289	4.0	289	98	0	2264	35	5	13	45	1.67
10504088--10504211	39	3.1	39	70	13	117	35	6	15	42	1.72
10504003--10504225	81	2.7	79	83	10	263	37	7	13	41	1.72
10505966--10506100	21	6.2	22	66	16	68	44	17	7	31	1.76
10508162--10508207	21	2.2	21	84	0	56	23	4	10	60	1.47
10508259--10508306	20	2.4	20	100	0	96	33	20	10	35	1.87
10508270--10508322	12	4.8	12	71	17	51	30	20	9	39	1.84
10508792--10508820	13	2.1	14	93	6	51	31	13	13	41	1.84
10509150--10509178	15	2.0	15	93	6	51	31	6	13	48	1.69
10511597--10511658	24	2.7	22	77	5	61	32	3	19	45	1.66
10511581--10511699	46	2.6	46	78	6	123	36	4	16	42	1.68
10511886--10511981	17	5.6	17	82	2	97	38	19	5	36	1.75
10511872--10511972	34	3.0	33	79	5	103	39	17	3	38	1.69
10511971--10512004	17	2.0	17	88	0	50	32	14	17	35	1.91
10512026--10512085	18	3.4	17	82	15	77	35	11	10	43	1.75
10512025--10512073	9	5.3	10	72	18	52	34	10	12	42	1.76
10512072--10512138	35	1.9	34	84	3	89	35	17	14	31	1.91
10512146--10512191	17	2.6	17	86	3	56	30	10	17	41	1.84
10519670--10519898	81	2.8	81	82	5	284	39	8	11	40	1.72
10520042--10520093	3	17.7	3	96	4	97	32	0	0	67	0.91
10521441--10521510	26	2.6	26	80	13	79	75	1	5	17	1.06
10522550--10522839	88	3.3	87	73	14	224	42	8	6	43	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10523005--10523085	37	2.2	38	84	8	105	50	11	0	38	1.38
10523542--10523601	18	3.4	18	86	6	79	28	16	15	40	1.89
10529025--10529078	25	2.2	25	83	6	65	50	9	5	35	1.58
10529086--10529118	15	2.2	15	94	0	57	51	0	0	48	1.00
10529045--10529346	90	3.4	89	77	5	272	38	7	8	45	1.64
10531017--10531049	17	1.9	17	93	0	57	0	9	6	84	0.76
10530767--10531191	217	1.9	220	82	7	535	14	22	7	55	1.64
10532293--10532339	23	2.1	21	81	14	51	46	2	0	51	1.13
10542729--10542851	35	3.6	35	87	4	180	35	10	13	39	1.80
10543290--10543456	48	3.6	47	79	16	206	24	14	18	42	1.88
10543246--10543425	41	4.2	42	78	14	179	24	12	20	43	1.85
10543266--10543448	88	2.1	89	92	2	305	25	13	19	42	1.87
10543575--10543674	42	2.3	43	89	5	148	32	9	19	40	1.82
10543761--10544183	49	8.7	49	84	3	516	30	12	18	37	1.88
10543761--10544183	97	4.4	97	88	3	566	30	12	18	37	1.88
10543764--10544183	146	2.9	145	83	4	515	30	12	19	37	1.88
10544102--10544383	44	6.4	44	73	8	173	28	12	17	42	1.85
10544152--10544413	87	3.0	86	81	6	296	28	13	16	41	1.86
10544156--10544413	44	5.9	43	75	6	214	28	13	16	40	1.87
10544590--10544625	16	2.2	17	90	5	56	8	5	0	86	0.72
10544583--10544625	18	2.4	18	84	3	52	6	4	2	86	0.79
10545547--10545610	13	4.8	13	72	1	56	62	0	1	35	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10545594--10545637	21	2.1	21	83	8	54	75	2	2	20	1.03
10554760--10554836	3	25.7	3	75	10	68	35	3	28	32	1.76
10554760--10554836	18	4.7	16	82	7	77	35	3	28	32	1.76
10556811--10556843	2	16.5	2	100	0	66	51	0	0	48	1.00
10558499--10558545	24	2.0	24	95	0	85	42	25	12	19	1.86
10563575--10563638	24	2.7	24	77	0	65	40	6	6	46	1.54
10569955--10570002	21	2.4	20	80	16	55	29	2	0	68	1.01
10569967--10570014	21	2.3	21	79	13	55	27	2	0	70	0.98
10572215--10572245	1	31.0	1	100	0	62	100	0	0	0	0.00
10573718--10573775	7	8.3	7	92	0	98	46	15	37	0	1.46
10575494--10575531	20	1.9	19	89	5	58	26	13	0	60	1.33
10581761--10581807	21	2.2	20	82	10	58	10	4	8	76	1.13
10581762--10581807	20	2.2	20	88	7	65	8	4	8	78	1.09
10584212--10584256	20	2.3	19	84	7	54	42	11	2	44	1.52
10584282--10584385	53	2.0	53	86	3	147	42	20	10	26	1.84
10591108--10591148	20	2.0	22	85	9	59	24	2	41	31	1.68
10613980--10614132	48	3.2	48	84	3	191	30	11	18	39	1.87
10614051--10614332	44	6.4	44	73	8	173	29	12	15	42	1.84
10614101--10614362	87	3.0	86	82	6	305	29	14	15	41	1.86
10614111--10614362	44	5.8	43	76	6	220	29	14	15	40	1.87
10614527--10614556	10	3.0	10	95	0	51	10	0	3	86	0.67
10614724--10614763	22	1.9	21	85	10	55	70	17	2	10	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10615577--10615623	21	2.2	21	77	7	51	65	2	4	27	1.22
10615589--10615621	17	1.9	17	88	11	50	72	3	0	24	0.98
10625397--10625452	3	18.7	3	78	7	60	35	1	28	33	1.68
10625397--10625473	18	4.7	16	80	7	68	35	5	28	31	1.79
10627448--10627476	2	14.5	2	100	0	58	51	0	0	48	1.00
10629112--10629158	24	2.0	24	100	0	94	42	27	12	17	1.85
10634286--10634335	18	2.7	19	75	12	50	30	10	2	58	1.42
10636680--10636748	33	2.0	36	86	11	99	17	26	15	40	1.89
10638351--10638430	40	2.0	40	90	0	124	43	18	1	36	1.58
10640046--10640145	51	2.0	49	88	3	146	28	16	6	50	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100