genome.fa.s168.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  23  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4324162--4324223	11	5.6	11	74	0	52	51	4	8	35	1.53
4324360--4324586	44	5.3	44	72	11	150	45	4	8	40	1.55
4324162--4324467	22	14.0	22	70	10	128	50	4	6	38	1.51
4324387--4324464	11	7.1	11	69	5	50	44	3	6	44	1.47
4324490--4324592	22	4.7	22	74	9	95	48	3	10	36	1.56
4324563--4324608	22	2.1	21	84	4	56	47	6	8	36	1.60
4324885--4325067	22	8.4	21	73	10	102	48	7	6	38	1.57
4324889--4325067	44	4.1	43	75	8	121	48	7	5	37	1.56
4325309--4325338	7	4.1	7	91	8	51	40	0	0	60	0.97
4325309--4325338	15	2.1	14	93	6	51	40	0	0	60	0.97
4325400--4325550	22	6.9	22	69	8	92	48	5	8	37	1.58
4325404--4325503	43	2.3	43	79	6	103	46	7	10	37	1.65
4325601--4325636	16	2.3	15	90	4	54	55	0	5	38	1.23
4325619--4325659	22	1.9	22	85	5	57	53	0	7	39	1.29
4325890--4326032	22	6.6	22	79	6	114	47	7	5	39	1.56
4325909--4325947	21	1.9	21	94	5	71	46	2	7	43	1.46
4326402--4326495	21	4.3	21	75	10	73	48	7	6	37	1.57
4326497--4326591	48	2.0	48	83	4	120	50	8	1	40	1.40
4326688--4326713	2	13.0	2	100	0	52	0	0	50	50	1.00
4330545--4330588	22	2.0	22	95	0	79	31	11	13	43	1.80
4334628--4334671	22	2.0	22	90	0	70	31	11	11	45	1.76
4345524--4345560	3	12.3	3	100	0	74	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4355636--4355670	12	2.8	12	86	4	52	25	0	37	37	1.57
4356954--4356996	18	2.4	18	100	0	86	32	0	39	27	1.57
4357512--4357918	135	3.0	134	89	1	591	46	14	16	22	1.83
4357552--4357909	68	5.3	68	66	10	194	45	14	17	22	1.84
4357615--4357838	67	3.3	67	69	9	195	43	14	19	22	1.87
4358097--4358264	36	4.7	35	71	14	135	46	12	21	19	1.83
4358020--4358631	217	2.8	218	86	3	842	47	13	19	20	1.82
4358047--4358645	326	1.8	326	89	2	952	46	13	19	20	1.83
4358020--4358631	109	5.6	109	86	2	784	47	13	19	20	1.82
4359720--4359768	8	5.7	9	76	13	50	2	12	2	83	0.82
4359720--4359768	9	5.9	8	79	15	55	2	12	2	83	0.82
4371072--4371106	12	2.8	12	86	4	52	25	0	37	37	1.57
4371166--4371247	16	5.4	15	77	12	78	19	1	32	46	1.58
4371176--4371247	31	2.3	31	80	4	83	19	1	31	47	1.58
4372920--4372974	27	2.0	27	92	0	92	29	36	9	25	1.87
4377516--4377549	12	2.9	12	86	4	52	44	0	5	50	1.26
4378393--4378440	23	2.1	23	84	7	62	50	6	10	33	1.62
4381042--4381083	21	2.2	19	87	12	59	30	0	2	66	1.04
4381736--4381760	11	2.3	11	100	0	50	8	8	0	84	0.79
4381807--4381851	10	3.8	12	77	22	51	33	0	0	66	0.92
4383282--4383405	49	2.5	50	80	11	148	41	20	12	25	1.88
4383364--4383445	40	2.0	41	83	2	103	36	18	13	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4383407--4383542	66	2.1	65	86	4	184	40	19	10	30	1.84
4383487--4383836	52	6.8	52	78	6	325	40	20	11	27	1.87
4383652--4383841	51	3.8	50	83	4	238	37	21	12	28	1.90
4383486--4383836	106	3.4	102	78	6	373	40	20	11	27	1.87
4388000--4388053	21	2.6	21	100	0	108	29	29	22	18	1.97
4389334--4389374	18	2.3	18	100	0	82	34	4	17	43	1.70
4389554--4389604	21	2.4	21	80	9	59	39	21	3	35	1.72
4393805--4393970	89	1.9	89	90	0	269	27	21	21	30	1.98
4395011--4395209	104	1.9	104	85	0	272	21	15	23	39	1.91
4395267--4395348	42	2.0	42	90	4	130	30	7	26	35	1.84
4398688--4398749	28	2.2	28	100	0	124	29	9	11	50	1.70
4401569--4401633	21	3.0	21	83	14	80	46	0	1	52	1.10
4403090--4403120	14	2.1	15	94	5	55	12	12	6	67	1.40
4404138--4404164	7	3.9	7	100	0	54	25	0	0	74	0.83
4408316--4408375	25	2.4	25	82	2	66	41	6	8	43	1.61
4410106--4410159	24	2.3	23	84	12	65	25	7	0	66	1.17
4414750--4414784	18	1.9	18	88	0	52	42	2	2	51	1.31
4414776--4414845	32	2.2	32	86	0	95	47	0	0	52	1.00
4414777--4414884	25	4.3	25	74	18	75	49	0	0	49	1.13
4414804--4414863	24	2.5	24	89	8	86	50	0	0	50	1.00
4414804--4414872	24	2.8	23	78	10	75	53	1	0	44	1.09
4417980--4418016	15	2.4	16	82	13	51	59	16	0	24	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4418324--4418367	16	3.0	16	75	18	51	27	4	9	59	1.48
4418437--4418476	21	1.9	21	85	10	55	37	5	5	52	1.45
4425603--4425641	20	1.9	21	85	15	55	64	7	17	10	1.48
4429104--4429142	20	2.0	20	84	0	51	25	15	12	46	1.81
4430742--4430771	14	2.1	14	93	0	51	0	23	6	70	1.11
4438876--4438900	3	8.3	3	100	0	50	68	0	0	32	0.90
4440077--4440117	19	2.2	19	95	0	73	51	9	14	24	1.72
4440577--4440615	14	2.8	14	88	7	53	51	0	2	46	1.14
4454352--4454394	22	2.0	22	100	0	86	46	11	9	32	1.72
4458072--4458131	25	2.4	25	91	0	93	40	20	23	16	1.91
4458391--4458434	22	2.0	22	90	0	70	45	13	9	31	1.75
4462265--4462299	2	17.5	2	100	0	70	51	0	0	48	1.00
4462912--4463067	22	7.1	22	80	2	109	39	5	8	46	1.56
4462916--4463090	65	2.7	65	78	4	156	40	5	8	46	1.57
4463067--4463171	52	2.0	52	83	3	131	41	11	4	41	1.62
4463123--4463337	22	9.9	22	68	13	68	36	11	4	47	1.60
4463321--4463356	16	2.3	16	90	4	56	38	5	0	55	1.23
4463405--4463571	22	7.6	22	70	7	88	38	9	5	46	1.60
4463619--4463648	7	4.1	7	91	8	51	60	0	0	40	0.97
4463619--4463648	15	2.1	15	93	6	53	60	0	0	40	0.97
4463890--4464072	22	8.4	22	70	8	113	37	7	8	47	1.61
4463890--4464072	44	4.2	44	74	6	142	37	7	8	47	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4464095--4464179	22	3.9	22	71	11	66	30	9	10	49	1.69
4464164--4464199	17	2.1	17	89	0	54	47	11	0	41	1.39
4464349--4464575	22	10.6	21	68	11	61	40	8	5	44	1.59
4464736--4464795	11	5.5	11	79	0	57	36	6	5	51	1.50
4464490--4464795	22	14.0	22	71	9	110	38	6	4	50	1.49
4464524--4464795	44	6.2	44	72	5	140	37	6	4	51	1.49
4466104--4466163	22	2.7	22	82	10	68	55	5	3	36	1.38
4466205--4466243	19	2.1	19	95	0	69	58	0	5	35	1.20
4469735--4469895	84	1.9	84	84	2	216	42	8	19	30	1.80
4471088--4471349	130	2.0	130	92	0	434	36	18	12	31	1.89
4473309--4473369	13	5.2	13	74	25	73	54	6	0	39	1.27
4473312--4473375	32	2.0	32	100	0	128	53	6	0	40	1.26
4473313--4473356	19	2.4	19	92	3	72	54	4	0	40	1.21
4473407--4473471	26	2.5	26	77	10	78	50	0	0	49	1.00
4473445--4473494	19	2.7	19	90	9	77	56	0	2	42	1.11
4473408--4473477	25	2.8	24	77	14	70	52	0	0	47	1.00
4473515--4473567	17	3.2	16	80	17	63	54	5	1	37	1.35
4473514--4473557	19	2.3	19	96	0	79	52	4	2	40	1.34
4473588--4473634	19	2.5	19	100	0	94	55	8	6	29	1.55
4473636--4473669	17	2.0	17	94	0	59	61	8	0	29	1.26
4473668--4473699	15	2.1	15	94	0	55	59	3	3	34	1.29
4475186--4475255	25	2.9	24	75	12	63	30	5	20	44	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4477329--4477360	15	2.0	17	88	11	50	46	0	12	40	1.42
4478119--4478208	45	2.0	45	91	4	146	31	12	18	37	1.88
4480593--4480678	21	4.1	21	77	8	77	52	5	3	38	1.43
4480691--4480743	27	2.0	26	88	3	79	58	11	1	28	1.43
4480832--4480881	21	2.3	22	83	13	68	50	4	8	38	1.51
4480944--4480994	21	2.4	21	80	0	57	54	9	3	31	1.51
4480961--4481026	21	3.2	20	80	6	60	50	9	7	33	1.62
4480972--4481035	20	3.2	20	82	4	74	46	7	7	37	1.62
4481041--4481079	20	2.0	20	89	0	60	43	5	12	38	1.65
4480989--4481091	47	2.2	47	84	6	129	48	6	8	35	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100