genome.fa.s168.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  98  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17314505--17314562	29	2.0	29	83	12	75	58	18	3	18	1.53
17316850--17316890	22	1.9	21	85	5	55	48	2	34	14	1.57
17318630--17318777	77	1.9	77	90	0	233	26	12	8	52	1.69
17322448--17322491	23	1.9	23	90	0	70	6	13	6	72	1.25
17323475--17323513	18	2.2	18	86	9	53	23	2	20	53	1.57
17325662--17325693	9	3.4	10	83	16	50	9	9	9	71	1.30
17329178--17329266	39	2.4	37	84	3	106	43	25	11	19	1.84
17329407--17329507	45	2.2	46	83	1	123	23	12	13	49	1.77
17344053--17344295	121	2.0	121	93	0	414	25	23	11	39	1.89
17350086--17350133	22	2.2	22	96	0	87	29	12	4	54	1.56
17354252--17354308	2	28.5	2	100	0	114	50	0	49	0	1.00
17354654--17354714	16	3.6	16	73	8	50	37	11	14	36	1.83
17363496--17364048	202	2.7	198	77	7	524	35	12	11	41	1.79
17369108--17369230	37	3.3	37	84	4	149	21	13	18	46	1.83
17369617--17369659	3	14.3	3	100	0	86	32	0	0	67	0.91
17377030--17377090	21	2.9	21	87	0	77	63	9	4	21	1.43
17378615--17378729	55	2.1	55	85	3	151	49	16	10	23	1.76
17379267--17379308	17	2.5	17	92	0	66	33	14	11	40	1.82
17382005--17382062	24	2.5	24	94	2	100	53	10	0	36	1.35
17382819--17382847	15	1.9	15	100	0	58	31	13	6	48	1.69
17383376--17383405	14	2.1	15	93	6	53	73	0	0	26	0.84
17383855--17383893	20	2.0	20	89	0	60	51	0	5	43	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17391346--17391742	145	2.7	144	82	1	463	33	15	10	40	1.82
17392616--17392693	41	1.9	41	83	0	102	38	10	19	32	1.85
17392629--17392773	41	3.5	40	78	8	139	33	11	15	39	1.83
17396020--17396206	48	3.9	48	83	9	213	36	25	10	26	1.89
17396252--17396745	48	10.3	49	77	11	445	36	21	11	30	1.89
17396252--17396745	97	5.2	97	80	7	496	36	21	11	30	1.89
17396321--17396745	48	8.8	48	82	6	482	37	21	12	29	1.89
17396984--17397027	19	2.4	19	96	3	81	18	31	4	45	1.69
17400456--17400486	15	2.0	16	93	6	55	22	0	0	77	0.77
17400656--17400698	18	2.4	18	84	7	52	27	4	2	65	1.25
17400691--17400738	19	2.5	20	75	3	53	41	0	2	56	1.11
17400843--17400877	10	3.4	10	88	4	52	20	2	0	77	0.90
17404156--17404190	18	2.1	17	89	10	54	34	0	8	57	1.29
17404212--17404250	20	1.9	21	89	5	62	71	0	5	23	1.05
17404305--17404351	26	1.9	24	83	12	60	55	0	0	44	0.99
17404948--17404991	22	2.0	22	86	0	61	38	4	4	52	1.42
17415658--17415688	15	2.0	16	93	6	55	22	0	0	77	0.77
17416049--17416082	10	3.4	10	87	0	50	14	2	0	82	0.79
17431192--17431226	17	2.0	17	88	5	52	5	2	8	82	0.91
17431982--17432013	16	2.0	16	93	0	55	21	0	0	78	0.76
17432187--17432229	18	2.4	18	84	7	52	27	4	2	65	1.25
17432222--17432261	21	1.9	21	85	10	55	45	0	2	52	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17432375--17432406	9	3.4	9	91	8	55	18	3	0	78	0.89
17436017--17436047	14	2.1	15	94	5	55	54	9	0	35	1.33
17443175--17443227	13	3.7	13	75	22	52	73	9	7	9	1.25
17455878--17455925	17	3.0	16	79	8	53	47	0	0	52	1.00
17456161--17456193	14	2.3	15	94	5	59	36	0	0	63	0.95
17461276--17461305	7	4.3	7	95	0	51	13	3	0	83	0.77
17461276--17461315	14	2.8	14	88	3	53	12	10	0	77	0.99
17462909--17462981	28	2.6	28	78	4	76	38	1	6	53	1.36
17463635--17463700	9	7.3	9	75	0	60	56	9	0	34	1.31
17463636--17463700	27	2.4	27	100	0	130	56	9	0	33	1.31
17465289--17465318	14	2.1	15	93	6	53	73	0	0	26	0.84
17465769--17465807	20	2.0	20	89	0	60	51	0	5	43	1.24
17469041--17469080	15	2.7	15	96	0	71	45	12	7	35	1.70
17473264--17473662	145	2.7	145	84	0	519	34	15	10	39	1.82
17474106--17474305	62	3.3	61	75	10	167	31	13	17	38	1.88
17474553--17474706	42	3.7	41	80	4	157	32	12	14	40	1.84
17477943--17478641	49	14.6	48	81	7	704	37	21	12	29	1.90
17482218--17482262	18	2.6	18	78	3	56	37	15	15	31	1.89
17482181--17482417	86	2.8	86	81	3	307	35	12	18	33	1.89
17482410--17482450	19	2.2	19	86	0	55	48	17	4	29	1.67
17482482--17482526	19	2.4	19	84	0	63	44	17	13	24	1.85
17482438--17482650	71	3.0	71	79	6	225	41	15	15	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17482530--17482634	36	3.0	34	73	13	95	40	14	16	29	1.87
17482501--17482633	53	2.5	53	83	1	178	39	15	16	28	1.89
17482739--17482810	22	3.1	24	67	15	60	43	15	5	36	1.70
17498970--17499029	30	2.0	31	86	3	86	43	10	13	33	1.77
17501486--17501922	41	10.4	41	73	11	217	43	14	12	29	1.82
17501474--17501922	42	10.7	42	74	9	326	43	14	12	29	1.83
17501476--17501922	83	5.3	84	76	7	383	43	14	12	29	1.82
17503690--17503728	17	2.4	17	87	12	55	71	0	25	2	0.98
17504938--17504976	12	3.1	13	81	7	53	25	17	12	43	1.85
17505691--17505795	33	3.2	34	80	10	119	22	21	9	45	1.81
17505741--17505895	33	4.7	33	75	5	107	24	18	14	41	1.88
17505741--17505878	66	2.1	66	82	5	163	23	19	15	42	1.89
17506515--17506558	24	1.9	23	86	9	63	59	2	11	27	1.44
17506848--17506894	17	2.7	18	80	12	53	72	8	6	12	1.27
17510331--17510554	110	2.0	110	90	5	355	27	22	12	37	1.91
17513526--17513576	22	2.3	22	93	0	84	33	1	3	60	1.26
17515326--17515379	23	2.3	23	84	12	67	5	14	5	74	1.19
17519013--17519052	21	1.9	21	94	0	71	85	0	12	2	0.71
17519039--17519082	8	5.2	8	78	10	52	72	0	18	9	1.10
17519010--17519052	10	4.2	10	91	5	68	86	0	11	2	0.67
17519010--17519078	11	7.2	10	72	25	60	79	0	15	4	0.88
17519010--17519078	28	2.4	29	79	11	79	79	0	15	4	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17520263--17520375	21	5.3	21	81	10	140	37	11	17	33	1.86
17520257--17520373	42	2.7	45	89	7	172	35	11	16	35	1.85
17520261--17520429	88	1.9	86	82	4	205	39	11	13	35	1.82
17520278--17520432	46	3.5	46	78	8	122	40	11	12	36	1.79
17520460--17520505	20	2.3	20	85	3	58	43	15	13	28	1.83
17520473--17520548	20	3.8	20	83	0	107	39	9	17	34	1.81
17520473--17520549	40	1.9	40	91	0	127	38	9	18	33	1.82
17520406--17520629	117	1.9	121	85	3	312	39	11	15	33	1.83
17520589--17520629	22	1.9	21	85	14	57	36	9	19	34	1.85
17520530--17520685	81	1.9	80	81	3	188	37	12	17	32	1.87
17520700--17520783	44	2.0	44	85	4	118	30	13	17	38	1.88
17521001--17521055	28	2.0	27	82	3	65	29	10	12	47	1.76
17521094--17521243	42	3.6	41	81	10	162	23	10	18	47	1.80
17521099--17521263	40	4.0	41	81	6	145	23	10	18	47	1.79
17521802--17521874	21	3.4	21	74	18	62	10	1	12	75	1.11
17521802--17521884	43	1.9	42	80	9	96	12	2	12	73	1.19
17523982--17524021	17	2.2	20	86	13	59	67	5	12	15	1.38
17530332--17530367	16	2.2	16	90	0	54	50	0	19	30	1.48
17532074--17532120	21	2.2	21	85	7	60	63	4	12	19	1.44
17533015--17533048	16	2.1	16	94	0	59	76	2	0	20	0.92
17533811--17533840	15	1.9	16	93	6	53	6	6	3	83	0.90
17535001--17535044	21	2.1	21	91	8	72	0	31	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17535114--17535157	10	4.4	10	82	8	54	0	18	0	81	0.68
17536206--17536248	19	2.4	18	80	7	52	37	4	25	32	1.77
17536412--17536450	13	2.9	13	88	3	51	58	15	2	23	1.49
17543265--17543353	40	2.2	40	81	0	97	41	6	4	47	1.50
17544718--17544743	3	8.7	3	100	0	52	69	30	0	0	0.89
17544742--17544815	3	24.7	3	97	0	103	60	0	6	32	1.23
17545235--17545408	75	2.3	75	83	1	213	47	2	36	13	1.57
17562010--17562056	24	2.0	24	83	8	60	40	19	19	21	1.92
17562197--17562475	29	9.8	29	79	5	219	35	15	18	31	1.91
17562197--17562435	57	4.2	57	77	6	216	36	14	17	31	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100