genome.fa.s168.2.7.7.80.10.50.1000.78.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  78  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14014292--14014316	12	2.1	12	100	0	50	32	8	8	52	1.60
14018655--14018688	3	11.7	3	93	6	61	67	0	0	32	0.91
14019652--14019681	16	1.9	15	93	6	51	20	20	30	30	1.97
14020072--14020113	18	2.4	17	84	11	50	61	4	0	33	1.17
14020241--14020276	13	2.8	13	91	0	54	44	30	0	25	1.54
14022440--14022475	18	2.0	18	100	0	72	44	5	33	16	1.71
14025446--14025489	18	2.4	18	100	0	88	54	9	18	18	1.69
14031645--14031705	10	5.8	10	75	11	50	85	4	3	6	0.83
14031645--14031695	15	3.3	15	75	17	50	86	5	1	5	0.78
14031645--14031705	27	2.3	26	83	10	79	85	4	3	6	0.83
14032737--14032950	73	2.9	71	86	4	275	17	21	15	44	1.86
14032905--14033111	36	5.7	34	75	13	164	17	18	12	51	1.76
14032853--14033099	75	3.3	74	85	4	293	18	20	12	48	1.81
14033148--14033462	101	3.1	101	79	7	361	20	19	13	46	1.83
14033902--14033938	3	12.7	3	94	5	67	67	0	0	32	0.91
14033980--14034006	11	2.5	11	100	0	54	92	0	7	0	0.38
14034756--14034836	28	2.9	28	86	0	108	33	16	23	27	1.95
14035138--14035192	3	18.3	3	75	20	53	65	1	3	29	1.20
14035138--14035188	11	4.5	11	75	20	52	66	1	3	27	1.20
14035139--14035200	17	3.4	17	72	23	54	66	1	4	27	1.21
14035335--14035371	19	1.9	19	94	0	65	70	5	2	21	1.20
14035336--14035386	19	2.6	19	85	11	61	68	3	1	25	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14035418--14035459	21	2.0	22	95	4	77	28	0	2	69	1.01
14035865--14035902	20	2.0	20	89	5	60	31	0	7	60	1.25
14040733--14040780	19	2.6	19	83	9	55	41	0	0	58	0.98
14044716--14044753	17	2.2	17	86	9	51	31	21	10	36	1.87
14046153--14046208	20	2.8	19	78	10	58	46	7	1	44	1.41
14052320--14052639	159	2.0	159	99	0	631	39	10	11	38	1.76
14053149--14053290	73	1.9	74	84	7	191	48	4	10	36	1.57
14056051--14056100	18	2.4	23	68	28	56	52	0	0	48	1.00
14056667--14056698	15	2.1	15	94	0	55	25	18	6	50	1.70
14060702--14060727	13	2.0	13	100	0	52	38	23	7	30	1.83
14061222--14061265	3	14.7	3	100	0	88	65	0	0	34	0.93
14063037--14063219	91	2.0	91	98	0	357	48	15	13	22	1.79
14064327--14064369	21	2.2	19	83	8	50	27	2	4	65	1.25
14064613--14064661	19	2.5	20	75	24	59	44	2	6	46	1.39
14065013--14065108	29	3.2	28	69	18	68	54	1	0	44	1.07
14065063--14065113	24	2.1	24	85	7	68	50	0	0	49	1.00
14065164--14065192	7	4.3	7	91	8	51	82	0	0	17	0.66
14065167--14065192	13	2.0	13	100	0	52	84	0	0	15	0.62
14067836--14067877	17	2.5	18	81	14	54	69	2	0	28	1.01
14073848--14073887	2	20.5	2	94	5	73	52	0	0	47	1.00
14074190--14074256	6	11.8	6	70	17	54	65	1	1	31	1.10
14074190--14074260	22	3.2	21	74	7	70	66	1	1	30	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14074198--14074251	28	1.9	28	88	7	83	62	1	1	33	1.16
14074192--14074260	16	4.6	16	72	17	58	65	1	1	31	1.11
14074378--14074402	12	2.1	12	100	0	50	40	0	24	36	1.55
14076461--14076487	2	13.5	2	100	0	54	51	0	0	48	1.00
14079103--14079147	22	2.1	22	84	8	58	22	0	6	71	1.09
14079406--14079447	23	1.9	21	90	9	66	23	2	0	73	0.94
14079783--14079807	12	2.1	12	100	0	50	24	8	32	36	1.84
14084567--14084611	16	2.9	16	87	9	58	82	2	6	8	0.93
14085602--14085769	45	3.8	44	84	3	185	37	9	12	40	1.76
14085914--14085967	17	3.2	17	86	0	63	29	20	5	44	1.74
14085921--14086137	36	6.1	36	73	11	128	28	15	11	44	1.82
14085921--14086137	17	12.3	17	68	16	86	28	15	11	44	1.82
14086040--14086153	53	2.2	50	86	9	149	28	14	14	42	1.85
14086195--14086245	17	3.1	17	77	2	59	25	13	15	45	1.83
14086233--14086276	20	2.3	19	88	7	63	25	6	11	56	1.58
14086249--14086327	35	2.3	35	82	4	88	35	11	7	45	1.69
14086331--14086432	18	5.6	18	78	2	105	36	13	9	40	1.78
14086330--14086432	36	2.8	37	83	2	136	36	13	9	39	1.78
14086330--14086468	73	1.9	74	80	1	163	36	15	10	37	1.82
14086457--14086488	15	2.1	16	94	5	57	34	12	12	40	1.81
14090419--14090451	5	6.8	5	96	3	59	84	0	15	0	0.61
14093769--14093804	16	2.2	17	90	5	56	25	2	13	58	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14093919--14094004	23	3.8	23	96	3	158	59	0	13	26	1.35
14093923--14094026	46	2.3	45	82	11	122	64	0	8	26	1.22
14093990--14094031	6	7.0	6	81	10	50	73	0	0	26	0.83
14094616--14094663	25	1.9	25	83	8	62	22	16	2	58	1.49
14094851--14094884	18	1.9	17	88	5	50	76	0	20	2	0.92
14094910--14094953	5	8.8	5	90	9	56	61	0	0	38	0.96
14095017--14095117	3	34.0	3	83	5	116	60	3	0	34	1.22
14099276--14099308	16	2.1	16	100	0	66	42	0	18	39	1.50
14105467--14105496	15	2.0	15	100	0	60	26	13	6	53	1.64
14106363--14106416	10	5.4	10	86	0	54	44	3	5	46	1.44
14106371--14106416	2	23.0	2	86	0	65	47	4	2	45	1.34
14106756--14106797	20	2.1	20	100	0	84	26	23	26	23	2.00
14106906--14106972	14	4.9	14	82	12	68	71	0	0	28	0.86
14106927--14106963	7	5.3	7	100	0	74	72	0	0	27	0.84
14106920--14106972	21	2.5	22	82	11	76	73	0	0	26	0.83
14106903--14107020	14	7.9	15	72	18	63	68	1	0	28	1.05
14107699--14107750	24	2.3	23	83	6	61	57	15	25	1	1.48
14108862--14108891	3	10.0	3	100	0	60	66	0	0	33	0.92
14108932--14109064	53	2.6	53	84	5	148	42	3	17	37	1.65
14109068--14109097	2	15.0	2	100	0	60	50	0	0	50	1.00
14109191--14109233	13	3.3	13	75	12	52	55	6	4	32	1.47
14109182--14109304	26	4.7	27	86	4	146	49	14	7	28	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14109239--14109287	14	3.6	14	71	20	50	48	18	8	24	1.75
14126281--14128706	812	3.0	806	89	2	3851	25	15	17	41	1.89
14129270--14129296	13	2.1	13	100	0	54	55	7	7	29	1.55
14129763--14129969	35	5.9	35	77	2	216	28	13	16	42	1.85
14129761--14129972	71	3.0	71	90	0	325	28	13	16	41	1.86
14131524--14131593	21	3.2	20	73	25	61	70	4	2	22	1.19
14131826--14131896	3	24.0	3	94	2	126	64	0	1	33	1.02
14132019--14132062	22	2.0	22	86	0	61	65	2	0	31	1.05
14132512--14132550	15	2.5	16	79	4	53	66	0	0	33	0.92
14135524--14135575	19	2.8	19	86	11	72	3	11	3	80	0.97
14135599--14135628	15	1.9	16	93	6	53	50	0	3	46	1.18
14142043--14142312	134	2.0	134	97	0	504	40	14	12	32	1.83
14143204--14143419	80	2.7	79	82	2	261	41	25	8	25	1.83
14144208--14145654	698	2.1	698	88	2	2127	37	11	14	35	1.83
14145924--14145955	15	2.1	16	94	5	57	37	0	25	37	1.56
14153698--14154044	134	2.6	135	81	4	398	40	19	14	25	1.89
14153663--14154154	135	3.7	131	76	7	330	40	18	14	26	1.89
14155407--14155463	28	2.0	28	93	0	96	31	14	26	28	1.94
14155533--14155557	13	1.9	13	100	0	50	28	0	0	72	0.86
14156528--14156570	21	2.0	21	91	8	70	18	11	32	37	1.87
14156655--14156713	3	19.7	3	85	0	55	25	28	8	37	1.85
14156733--14156778	3	15.7	3	81	4	58	30	0	30	39	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14156712--14156780	6	11.7	6	89	3	50	30	0	20	49	1.49
14157300--14157384	31	2.7	31	77	1	89	22	4	24	48	1.70
14157629--14157683	16	3.7	15	80	7	58	21	3	1	72	1.09
14162016--14162048	17	1.9	17	93	0	57	84	3	12	0	0.72
14163159--14163382	120	1.9	120	83	5	292	21	26	10	41	1.85
14163555--14163647	3	32.7	3	71	18	65	34	5	3	56	1.38
14164670--14164729	25	2.4	25	94	0	102	50	5	6	38	1.51
14168229--14168261	17	2.0	16	94	5	57	72	3	0	24	0.98
14171994--14172031	19	2.1	18	95	5	67	44	13	26	15	1.83
14172000--14172041	19	2.2	19	86	0	57	40	16	28	14	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100