genome.fa.s168.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  32  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5951298--5951335	19	2.0	19	94	0	67	15	13	0	71	1.16
5951956--5953916	556	3.5	551	79	6	1969	34	12	12	40	1.80
5954501--5954565	26	2.5	26	89	0	94	55	4	1	38	1.30
5957349--5957383	13	2.6	14	90	4	54	20	2	25	51	1.61
5957578--5957615	19	2.0	19	89	0	58	26	2	2	68	1.16
5957574--5957616	10	4.4	10	82	5	52	27	2	2	67	1.15
5957866--5957900	3	11.7	3	93	0	61	71	0	0	28	0.86
5959369--5959404	19	1.9	18	94	5	63	0	2	13	83	0.76
5959387--5959412	13	2.0	13	100	0	52	0	0	15	84	0.62
5959420--5959540	35	3.4	36	80	3	127	52	11	17	18	1.73
5959622--5959741	35	3.7	31	72	22	88	58	11	11	18	1.63
5959816--5959890	35	2.2	34	83	9	91	57	13	13	16	1.66
5959829--5959903	35	2.1	35	82	4	89	62	8	12	17	1.52
5960030--5960075	22	2.0	23	87	4	67	32	4	2	60	1.28
5961408--5961510	34	3.0	34	76	8	93	38	9	9	41	1.71
5962371--5962400	10	2.8	11	90	10	53	20	0	30	50	1.49
5962371--5962414	21	2.1	21	82	0	52	22	4	27	45	1.72
5962425--5962581	52	3.0	52	87	5	194	39	9	25	25	1.86
5963443--5963484	11	3.8	11	83	0	57	26	0	23	50	1.50
5963442--5963484	22	2.0	22	90	0	68	27	0	23	48	1.51
5963519--5963654	52	2.6	52	88	2	193	44	6	22	26	1.77
5964149--5964230	31	2.6	31	92	0	128	29	21	23	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5964227--5964308	25	3.3	24	79	5	92	40	6	32	20	1.77
5964569--5964597	11	2.6	11	100	0	58	20	0	27	51	1.47
5964636--5964769	52	2.6	52	84	4	173	44	7	21	26	1.78
5971446--5971542	3	32.7	3	86	6	135	64	3	2	29	1.20
5971756--5972002	55	4.5	55	74	13	190	45	15	17	21	1.85
5971741--5972002	110	2.4	111	79	8	279	46	16	17	20	1.85
5971757--5972037	110	2.6	110	79	6	259	45	14	18	22	1.85
5976278--5976326	20	2.5	20	96	0	89	36	22	22	18	1.95
5983915--5983965	6	8.3	6	83	16	61	76	1	1	19	0.98
5983903--5983965	21	3.0	20	78	19	65	74	3	1	20	1.04
5984233--5984267	10	3.6	10	88	3	54	22	8	8	60	1.54
5987362--5987388	6	4.5	6	100	0	54	37	0	0	62	0.95
5990635--5990685	22	2.3	22	96	0	93	37	27	9	25	1.87
5995563--5995596	2	17.0	2	100	0	68	50	0	0	50	1.00
5995969--5996002	4	8.5	4	93	0	59	26	2	23	47	1.66
5996078--5996110	2	16.5	2	100	0	66	0	48	0	51	1.00
5996110--5996152	2	21.5	2	100	0	86	48	0	0	51	1.00
6003842--6003914	6	12.2	6	82	5	94	32	1	47	17	1.56
6013172--6013335	22	7.5	22	75	6	100	39	7	5	47	1.54
6013209--6013349	66	2.1	66	82	0	165	39	8	5	46	1.58
6013208--6013414	22	9.5	22	75	7	143	38	7	7	45	1.62
6013156--6013357	44	4.6	45	76	6	146	40	8	5	46	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6013229--6013414	66	2.8	64	82	7	180	39	7	6	46	1.59
6013432--6013534	22	4.7	22	86	4	127	43	12	2	40	1.58
6013515--6013577	22	2.9	22	74	9	56	26	9	6	57	1.55
6013634--6013693	21	2.8	21	82	10	68	38	8	3	50	1.49
6013656--6013880	22	10.2	22	66	19	76	39	9	4	47	1.55
6013839--6013946	44	2.5	43	77	4	110	37	10	4	48	1.58
6014216--6014276	22	2.7	22	74	5	59	42	9	3	44	1.54
6014191--6014276	44	1.9	45	83	4	111	44	8	4	43	1.54
6014284--6014383	22	4.6	22	73	9	80	35	5	12	48	1.62
6014491--6014554	19	3.2	19	72	20	58	40	6	3	50	1.43
6014678--6014807	22	6.0	22	73	11	88	33	7	7	50	1.59
6014768--6014812	22	2.0	22	83	8	56	31	11	4	53	1.56
6014830--6014896	22	3.0	22	80	0	71	38	8	4	47	1.55
6015041--6015111	22	3.2	22	78	7	74	36	12	1	49	1.50
6015041--6015098	11	5.3	11	75	4	55	36	10	1	51	1.46
6017536--6017601	31	2.1	31	83	5	80	43	3	0	53	1.16
6018006--6018043	16	2.4	16	86	4	51	39	5	0	55	1.23
6024849--6024986	70	1.9	72	83	4	181	38	11	3	46	1.58
6025283--6025317	18	1.9	18	94	0	61	5	31	2	60	1.35
6027491--6027553	25	2.5	25	76	19	69	49	1	1	47	1.20
6027491--6027546	8	6.9	8	80	11	53	48	0	1	50	1.11
6032688--6032792	52	2.0	53	86	1	149	16	18	10	55	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6032938--6033083	72	2.0	72	98	0	283	26	13	21	38	1.91
6034779--6034817	17	2.4	17	91	4	62	46	5	0	48	1.24
6034765--6034844	33	2.3	34	80	6	90	51	7	0	41	1.30
6041816--6041863	25	1.9	25	86	0	69	47	2	2	47	1.25
6041881--6041928	22	2.2	22	82	14	55	31	2	0	66	1.03
6052568--6053087	178	2.9	175	79	8	561	43	19	13	24	1.86
6054046--6054115	32	2.2	31	84	2	86	52	1	1	44	1.18
6054230--6054275	9	4.9	9	82	10	56	13	2	2	82	0.85
6054218--6054265	24	2.0	23	84	11	62	8	4	4	83	0.90
6058705--6058807	50	2.1	50	83	7	129	33	12	8	44	1.73
6058990--6059032	21	2.2	18	84	12	50	34	9	9	46	1.68
6061633--6061863	117	2.0	117	86	3	322	21	32	16	29	1.95
6061938--6062125	96	2.0	96	88	0	277	26	35	14	23	1.94
6073239--6073273	15	2.2	16	90	5	54	51	0	0	48	1.00
6075164--6075214	15	3.3	15	74	12	50	25	3	0	70	1.04
6077309--6077355	24	2.0	24	82	0	58	46	10	34	8	1.69
6080353--6080944	296	2.0	295	97	1	1123	28	16	20	34	1.94
6083476--6083535	23	2.6	23	79	15	61	51	1	0	46	1.10
6083528--6083564	18	2.0	19	89	5	58	43	0	0	56	0.99
6085013--6085045	14	2.2	16	89	10	52	12	21	0	66	1.23
6088244--6088318	19	4.0	20	68	19	54	53	0	1	45	1.08
6088229--6088297	36	1.9	36	82	8	88	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6088250--6088318	17	3.7	20	70	20	60	53	0	1	44	1.09
6088331--6088530	12	17.4	11	66	23	74	44	1	1	52	1.19
6088348--6088414	33	2.0	34	85	8	93	41	0	1	56	1.08
6088340--6088547	40	5.1	39	73	19	167	44	1	1	52	1.18
6088387--6088520	22	6.2	22	73	15	102	43	1	1	53	1.19
6088327--6088490	27	5.7	29	67	16	81	44	0	1	53	1.12
6088365--6088548	85	2.2	80	84	10	235	44	1	1	53	1.17
6088410--6088490	32	2.6	30	77	12	92	45	1	1	51	1.16
6091873--6091921	9	5.1	10	72	18	50	65	2	0	32	1.04
6093524--6093560	14	2.4	17	86	13	53	16	5	2	75	1.10
6094604--6094942	57	5.7	58	85	8	436	46	7	12	33	1.69
6094612--6094699	27	3.2	27	65	21	65	44	4	11	39	1.61
6094592--6094955	122	3.0	120	88	7	519	48	8	11	32	1.68
6098788--6098851	17	4.1	16	74	20	55	82	0	10	6	0.82
6100081--6100781	41	17.0	42	91	6	1095	22	18	22	36	1.95
6100788--6100886	9	11.4	9	85	13	129	88	11	0	0	0.50
6100788--6100886	27	3.9	25	90	5	146	88	11	0	0	0.50
6100788--6100886	8	11.8	8	83	14	112	88	11	0	0	0.50
6100788--6100878	1	91.0	1	80	0	101	90	9	0	0	0.47
6101084--6101132	16	2.7	19	78	15	59	32	0	6	61	1.21
6102245--6102586	57	5.8	57	86	8	452	45	7	12	33	1.71
6102232--6102596	122	3.0	121	86	7	530	47	8	11	32	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6103530--6103554	13	1.9	13	100	0	50	32	8	0	60	1.26
6103584--6103664	33	2.4	33	80	11	94	22	6	4	66	1.33
6106727--6106757	16	1.9	16	93	0	53	64	3	0	32	1.09
6113501--6113529	2	15.0	2	92	7	51	48	0	0	51	1.00
6113976--6114000	13	1.9	13	100	0	50	32	8	0	60	1.26
6114030--6114109	33	2.4	32	82	10	99	22	6	5	66	1.34
6114025--6114109	32	2.5	33	79	9	93	23	5	4	65	1.34
6116745--6116790	14	3.4	14	80	14	51	50	2	0	47	1.13
6117681--6117711	16	1.9	16	93	0	53	64	3	0	32	1.09
6126794--6126818	13	1.9	13	100	0	50	32	8	0	60	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100