genome.fa.s168.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  35  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6632921--6633126	109	1.9	110	80	3	245	25	16	14	43	1.86
6632834--6633326	196	2.5	196	80	3	537	23	17	16	43	1.88
6632959--6633430	196	2.4	197	80	5	485	24	19	16	40	1.91
6633388--6633447	22	2.7	22	82	10	77	25	26	21	26	2.00
6633527--6633766	109	2.2	111	84	4	317	22	20	12	44	1.84
6633908--6633978	34	2.1	34	89	0	106	18	23	14	43	1.86
6633712--6634961	342	3.7	340	86	3	1634	22	19	12	45	1.83
6633754--6634958	513	2.3	511	86	3	1605	22	19	12	45	1.83
6633700--6634961	171	7.4	171	83	3	1457	22	19	12	45	1.83
6634963--6635100	36	3.8	36	70	11	93	21	22	10	46	1.81
6635298--6635338	20	2.0	20	95	0	73	51	0	0	48	1.00
6635352--6635383	17	1.9	17	93	6	57	65	0	0	34	0.93
6642978--6643029	9	5.4	9	76	19	52	21	0	5	73	1.04
6643667--6643696	9	3.3	9	95	0	51	70	0	0	30	0.88
6646638--6646794	78	2.0	78	98	0	305	32	7	21	38	1.80
6647255--6647349	43	2.2	44	83	7	122	40	10	10	38	1.74
6647279--6647390	43	2.6	44	81	7	122	39	11	10	38	1.77
6647695--6647760	10	6.8	10	93	6	118	57	0	0	42	0.98
6647695--6647760	19	3.4	19	97	2	123	57	0	0	42	0.98
6647756--6647792	12	2.9	13	85	14	51	37	0	2	59	1.12
6653624--6653665	2	21.0	2	100	0	84	50	0	0	50	1.00
6656405--6656433	10	2.9	10	100	0	58	51	0	27	20	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6656650--6656705	28	2.0	28	92	0	94	39	0	30	30	1.57
6663068--6663146	30	2.6	30	84	7	90	37	11	0	50	1.38
6668207--6668266	21	2.7	23	76	10	61	53	0	0	46	1.00
6668202--6668257	20	2.8	20	71	10	51	51	0	0	48	1.00
6669591--6669637	25	1.9	25	86	4	69	29	14	4	51	1.62
6670714--6670762	23	2.1	24	84	3	64	42	6	10	40	1.63
6670937--6670976	11	3.8	10	83	9	53	87	0	12	0	0.54
6670937--6670972	13	2.8	13	88	12	56	88	0	11	0	0.50
6670942--6670972	14	2.2	14	94	0	53	90	0	9	0	0.46
6670928--6670976	20	2.3	21	86	10	64	83	2	12	2	0.82
6675505--6675529	4	6.2	4	100	0	50	24	28	48	0	1.52
6676572--6676601	15	2.1	14	93	6	51	63	0	3	33	1.11
6681555--6681612	30	1.9	30	96	0	107	46	10	13	29	1.77
6685094--6685159	30	2.2	30	86	10	91	51	9	4	34	1.54
6696557--6696596	17	2.3	18	86	4	55	27	12	7	52	1.66
6696663--6696696	10	3.1	11	84	16	52	47	0	0	52	1.00
6696687--6696724	20	1.9	19	89	5	58	52	5	0	42	1.24
6698316--6698390	2	37.5	2	100	0	150	0	0	50	49	1.00
6705374--6705404	2	15.5	2	93	0	53	51	0	0	48	1.00
6707267--6707294	2	14.0	2	100	0	56	50	0	0	50	1.00
6711274--6711322	3	16.3	3	95	0	89	65	2	0	32	1.04
6712670--6712720	12	4.0	12	82	12	57	37	3	1	56	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6712678--6712720	13	3.3	13	81	9	52	34	4	0	60	1.17
6712670--6712715	14	3.6	13	82	11	51	41	2	2	54	1.25
6720904--6720958	15	3.6	15	76	13	58	27	0	0	72	0.85
6720906--6720951	16	2.8	16	81	12	58	26	0	0	73	0.83
6720921--6720964	23	1.9	23	90	0	70	25	0	0	75	0.81
6721276--6721308	5	6.6	5	96	0	57	57	0	0	42	0.98
6723541--6723577	2	18.5	2	100	0	74	48	0	0	51	1.00
6726754--6726870	24	5.2	24	68	22	60	46	0	0	52	1.12
6726761--6726856	43	2.2	41	80	10	95	46	1	1	51	1.14
6731033--6731455	211	2.0	211	98	0	819	31	20	18	28	1.97
6734755--6734889	52	2.6	52	85	3	173	46	5	20	27	1.73
6741648--6741686	17	2.3	17	100	0	78	38	7	17	35	1.79
6743859--6743906	22	2.1	23	88	11	73	83	0	14	2	0.74
6743857--6743902	19	2.4	20	82	7	60	82	0	13	4	0.81
6749488--6751076	357	4.5	356	83	3	1887	36	11	14	37	1.83
6749478--6751076	711	2.2	709	84	3	2064	36	11	14	37	1.83
6762620--6762652	17	1.9	17	88	11	50	36	9	12	42	1.74
6763774--6763859	30	2.8	31	71	15	90	40	9	4	45	1.57
6763881--6763928	20	2.3	20	85	3	69	56	2	4	37	1.30
6764829--6764907	16	4.6	17	74	19	67	46	1	0	51	1.08
6764802--6764856	21	2.5	22	78	21	62	47	0	0	52	1.00
6764805--6764865	25	2.4	25	74	17	63	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6765403--6765469	29	2.3	29	75	10	73	56	8	8	25	1.59
6766683--6766730	23	2.2	21	85	10	62	35	0	4	60	1.16
6767506--6767549	23	1.9	23	81	9	54	63	2	0	34	1.07
6768268--6768316	24	2.0	23	81	14	55	51	4	0	44	1.20
6768505--6768540	18	1.9	19	94	5	65	61	5	0	33	1.19
6772145--6772201	29	1.9	30	82	10	73	42	14	1	42	1.55
6780263--6780333	34	2.1	33	94	2	124	26	28	12	32	1.93
6782303--6782344	22	1.9	22	95	0	75	45	0	2	52	1.13
6782281--6782335	17	3.4	16	75	12	58	47	0	0	52	1.00
6782997--6783067	21	3.3	21	79	11	65	43	1	1	53	1.18
6783347--6783417	29	2.4	31	78	9	92	54	0	4	40	1.20
6784672--6784738	22	3.0	22	75	14	66	46	1	1	50	1.19
6787486--6787510	2	12.5	2	100	0	50	52	0	0	48	1.00
6788982--6789138	81	1.9	82	94	3	282	34	10	10	44	1.73
6789260--6789319	11	5.3	11	74	21	52	46	1	0	51	1.10
6792856--6792922	27	2.4	28	95	5	118	25	10	5	58	1.54
6793063--6793111	23	2.1	23	92	0	80	61	12	8	18	1.55
6793364--6793407	17	2.6	17	77	0	52	47	0	6	45	1.29
6793607--6793647	14	2.9	14	96	0	73	14	26	14	43	1.84
6793432--6793633	111	1.8	111	88	2	307	23	23	7	46	1.77
6795697--6795743	19	2.6	18	80	12	60	27	0	2	70	0.99
6795696--6795741	18	2.6	18	83	16	53	26	0	2	71	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6803744--6803793	23	2.2	23	81	0	55	42	10	16	32	1.81
6804370--6804423	3	18.0	3	100	0	108	66	0	0	33	0.92
6804422--6804523	3	34.0	3	100	0	204	33	0	0	66	0.92
6804637--6804699	3	21.0	3	100	0	126	33	0	0	66	0.92
6804461--6804811	176	2.0	176	100	0	702	31	8	10	50	1.66
6808264--6808317	2	27.0	2	84	0	72	48	1	3	46	1.30
6814027--6814070	14	2.8	15	86	13	54	81	13	2	2	0.88
6819984--6820019	2	18.0	2	100	0	72	50	0	0	50	1.00
6820795--6820822	13	2.2	13	100	0	56	50	7	25	17	1.72
6826809--6826871	27	2.4	28	94	5	105	31	9	17	41	1.82
6838567--6838619	21	2.5	22	93	3	90	50	0	0	49	1.00
6838762--6838786	11	2.3	11	100	0	50	16	68	16	0	1.22
6839206--6839248	22	2.0	22	85	0	59	60	0	6	32	1.23
6839250--6839305	23	2.5	23	82	8	62	44	0	0	55	0.99
6841625--6841695	23	3.1	23	79	15	60	56	0	2	40	1.14
6841657--6841712	23	2.6	22	83	10	71	50	0	0	50	1.00
6842258--6842317	12	4.8	13	76	15	56	65	0	0	35	0.93
6842261--6842299	16	2.4	16	82	0	51	64	0	0	35	0.94
6842257--6842318	22	2.8	22	73	7	63	64	0	0	35	0.94
6848188--6848250	26	2.4	26	79	10	74	12	1	31	53	1.48
6848220--6848291	20	3.6	20	76	14	69	19	2	29	48	1.63
6848711--6848739	3	9.7	3	100	0	58	31	0	0	68	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6850950--6851283	162	2.0	164	82	5	399	36	12	14	35	1.85
6854734--6854771	3	12.7	3	100	0	76	31	0	0	68	0.90
6856165--6856240	23	3.5	22	77	15	61	47	0	1	51	1.09
6857515--6857840	163	2.0	163	96	0	598	26	13	20	38	1.90
6869602--6869644	22	2.0	22	85	0	59	60	0	6	32	1.23
6869761--6869808	8	6.4	7	95	4	53	47	0	0	52	1.00
6869766--6869809	2	22.5	2	95	4	81	50	0	0	50	1.00
6869796--6870032	118	2.0	118	100	0	474	28	21	15	35	1.93
6870988--6871017	7	4.4	7	95	4	53	90	0	10	0	0.47
6871687--6871745	27	2.2	27	81	3	66	33	0	0	66	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100