genome.fa.s168.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  33  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6129576--6129621	14	3.4	14	80	14	51	50	2	0	47	1.13
6139638--6139662	13	1.9	13	100	0	50	32	8	0	60	1.26
6142417--6142462	14	3.4	14	80	14	51	50	2	0	47	1.13
6152763--6152798	16	2.2	16	90	5	54	41	5	11	41	1.64
6153486--6153510	2	12.5	2	100	0	50	52	0	0	48	1.00
6157348--6157384	13	2.9	13	96	4	67	40	5	0	54	1.24
6157373--6157418	21	2.2	21	100	0	92	43	0	4	52	1.21
6162573--6162715	73	2.0	73	90	0	223	48	5	10	35	1.61
6169324--6169373	21	2.5	20	90	9	75	30	20	28	22	1.98
6170158--6170198	14	2.7	15	88	7	57	19	26	7	46	1.76
6176268--6176413	73	2.0	73	83	2	186	46	11	10	30	1.75
6179452--6179487	18	2.0	18	100	0	72	38	16	11	33	1.84
6192268--6192322	16	3.6	16	76	11	53	45	0	0	54	0.99
6198722--6198762	13	3.3	13	83	6	50	60	0	0	39	0.96
6199374--6199406	17	2.0	17	88	5	50	27	0	0	72	0.85
6199826--6199853	2	14.0	2	100	0	56	0	50	0	50	1.00
6200384--6200425	22	1.9	22	95	0	75	54	0	2	42	1.13
6200517--6200545	14	2.1	14	93	6	51	51	0	0	48	1.00
6201063--6201097	2	17.5	2	87	0	52	42	0	0	57	0.99
6201232--6201260	3	9.7	3	100	0	58	34	0	0	65	0.93
6207902--6207957	22	2.5	24	82	11	73	53	1	0	44	1.11
6208800--6208848	15	3.4	14	76	20	55	59	0	2	38	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6209027--6209076	21	2.4	22	80	6	59	42	2	2	54	1.23
6209533--6209571	16	2.3	16	86	8	51	56	2	7	33	1.41
6209594--6209631	18	2.1	18	95	0	67	34	15	13	36	1.87
6209748--6209793	19	2.3	20	85	14	69	58	0	0	41	0.98
6210606--6210651	18	2.5	19	73	16	51	54	2	0	43	1.12
6210717--6210779	27	2.4	26	86	2	81	34	4	1	58	1.29
6219655--6219746	46	2.0	46	93	0	157	30	7	34	27	1.85
6229901--6229944	16	2.6	18	78	10	56	43	0	9	47	1.35
6229815--6230175	60	6.1	57	82	10	402	37	12	6	43	1.69
6229815--6230167	119	3.0	118	87	7	482	35	12	6	44	1.69
6230172--6230232	11	5.4	11	72	14	52	75	1	6	16	1.09
6229959--6230207	119	2.1	118	79	6	261	42	10	6	40	1.64
6231302--6231372	11	6.3	11	79	12	65	76	1	4	18	1.03
6231302--6231371	6	12.2	6	73	13	58	77	1	4	17	1.01
6231308--6231371	17	3.8	16	76	13	58	78	1	4	15	1.00
6231311--6231372	22	2.8	22	80	9	72	77	1	4	16	1.02
6233684--6233720	19	1.9	19	88	0	56	35	5	0	59	1.20
6238083--6238135	27	2.0	27	96	0	97	32	0	5	62	1.19
6238083--6238123	12	3.0	14	75	17	50	29	0	7	63	1.21
6238110--6238197	21	4.2	21	76	1	88	31	4	10	53	1.55
6238407--6238643	22	10.8	22	75	8	187	39	10	7	43	1.66
6238407--6238742	44	7.5	44	72	12	191	39	9	6	44	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6238392--6238761	66	5.5	64	71	12	224	38	9	6	44	1.64
6238642--6238901	22	11.9	22	70	7	116	38	9	5	47	1.58
6238885--6238918	16	2.2	16	89	5	52	38	5	2	52	1.41
6239059--6239105	22	2.1	22	88	0	67	36	10	4	48	1.57
6239069--6239117	22	2.2	22	77	0	53	38	10	8	42	1.68
6239439--6239539	22	4.6	22	82	0	103	40	5	3	49	1.46
6239426--6239519	44	2.1	44	82	3	109	38	6	5	50	1.51
6239439--6239539	11	9.2	11	66	0	58	40	5	3	49	1.46
6239434--6239549	44	2.7	42	78	5	106	40	6	4	49	1.47
6239792--6239860	22	3.2	20	78	13	66	39	13	4	43	1.63
6239844--6240022	22	8.2	21	72	11	112	35	7	7	49	1.58
6239854--6240036	65	2.8	64	78	6	172	35	7	6	50	1.56
6240052--6240101	22	2.3	22	85	0	64	46	8	2	44	1.44
6240064--6240374	22	14.3	22	68	10	102	38	8	4	48	1.54
6240310--6240385	20	3.7	20	77	10	73	40	10	3	44	1.57
6244171--6244201	8	3.8	8	95	4	53	64	0	0	35	0.94
6244113--6244256	68	2.1	68	80	12	188	46	4	2	45	1.39
6252180--6252240	22	2.8	21	75	15	54	60	8	1	29	1.35
6253125--6253172	2	24.0	2	91	8	80	50	0	2	47	1.12
6255051--6255105	14	4.1	13	77	20	51	67	5	0	27	1.12
6255311--6255344	10	3.2	10	88	12	50	44	0	0	55	0.99
6255311--6255344	12	3.1	11	91	8	52	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6260700--6260726	2	13.5	2	100	0	54	48	0	0	51	1.00
6265619--6265762	30	4.8	30	76	5	123	51	2	8	38	1.44
6271684--6271749	31	2.2	30	86	2	87	53	1	4	40	1.31
6271691--6271743	16	3.3	17	71	15	58	50	0	5	43	1.25
6271697--6271764	31	2.2	31	81	5	75	51	0	2	45	1.16
6271758--6271800	14	3.2	13	80	6	50	41	0	0	58	0.98
6278107--6278136	2	15.0	2	92	0	51	53	0	0	46	1.00
6280643--6280686	23	2.0	22	86	13	63	20	13	0	65	1.26
6280643--6280686	22	2.0	23	86	13	65	20	13	0	65	1.26
6282651--6282689	18	2.2	18	95	0	69	66	10	7	15	1.43
6290301--6290345	2	23.0	2	81	4	56	44	0	0	55	0.99
6291702--6291731	2	15.0	2	100	0	60	50	0	0	50	1.00
6304220--6304257	15	2.4	17	86	8	53	39	10	5	44	1.61
6307370--6307398	2	14.5	2	100	0	58	51	0	0	48	1.00
6317519--6317566	18	2.7	18	93	0	78	35	16	6	41	1.74
6321333--6321443	55	2.0	55	98	0	213	33	11	16	38	1.85
6321826--6321858	15	2.2	15	100	0	66	30	36	6	27	1.81
6322190--6322254	21	3.1	21	70	25	57	46	0	0	53	1.00
6322196--6322231	17	2.1	17	90	10	56	44	0	0	55	0.99
6322183--6322258	22	3.2	24	73	16	70	46	0	0	53	1.00
6322192--6322255	19	3.1	20	74	26	62	45	0	0	54	0.99
6322182--6322301	42	2.9	41	80	15	108	47	0	0	50	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6336766--6336822	24	2.4	24	85	5	71	42	1	0	56	1.10
6338233--6338258	2	13.0	2	100	0	52	50	0	0	50	1.00
6355881--6355932	18	3.1	17	79	15	54	9	0	9	80	0.90
6355904--6355941	18	2.1	18	85	9	51	26	0	5	68	1.11
6361320--6361357	19	2.0	20	84	5	51	63	13	0	23	1.30
6371912--6371978	29	2.3	29	79	7	73	49	13	4	32	1.62
6371988--6372093	14	6.6	14	66	26	50	55	13	4	26	1.57
6371993--6372102	20	6.3	19	65	28	75	57	11	3	27	1.51
6371951--6372093	50	3.0	48	86	7	195	55	11	4	27	1.57
6372049--6372116	33	2.0	34	86	8	95	57	13	2	26	1.50
6373210--6373258	22	2.2	22	92	0	80	16	10	4	69	1.32
6373319--6373388	6	11.7	6	81	0	77	62	4	5	27	1.36
6373305--6373351	18	2.6	19	80	10	53	63	12	2	21	1.39
6374170--6374200	9	3.4	9	95	0	53	41	9	25	22	1.84
6376200--6376231	14	2.3	14	100	0	64	12	18	0	68	1.20
6379475--6379575	35	2.9	35	86	1	139	49	15	3	30	1.63
6379552--6379612	29	2.0	31	87	9	90	63	9	0	26	1.25
6379623--6379660	20	1.9	20	94	0	67	44	15	5	34	1.69
6379624--6379671	20	2.4	20	86	6	62	45	12	8	33	1.72
6379849--6379886	17	2.2	18	90	4	60	84	5	0	10	0.77
6379846--6379892	23	2.0	24	87	4	69	80	6	0	12	0.88
6380802--6380860	18	3.2	17	85	9	57	66	8	0	25	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6380787--6380853	19	3.5	19	83	6	73	67	10	0	22	1.21
6380808--6380861	6	8.8	6	85	2	72	66	5	0	27	1.13
6380786--6380841	25	2.2	26	83	6	69	67	8	0	23	1.18
6382135--6382164	2	15.0	2	100	0	60	50	0	0	50	1.00
6382359--6382391	6	5.5	6	100	0	66	0	15	0	84	0.61
6391855--6391888	14	2.3	15	90	5	52	41	2	0	55	1.15
6395444--6395558	42	2.7	42	89	0	167	44	12	26	17	1.83
6395969--6396031	33	1.9	33	93	0	108	9	25	7	57	1.58
6395976--6396043	33	2.1	33	88	5	102	10	27	7	54	1.61
6399363--6399387	13	1.9	13	100	0	50	16	12	0	72	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100