genome.fa.s168.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  81  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14457835--14457898	26	2.5	26	86	0	83	26	21	26	25	2.00
14457857--14457907	26	2.0	26	92	0	84	23	19	31	25	1.98
14458258--14458787	89	6.0	89	74	7	396	45	15	21	17	1.85
14458297--14458783	267	1.8	267	82	2	638	44	16	21	17	1.86
14458270--14458787	178	2.9	176	81	3	581	45	15	21	17	1.85
14470071--14470104	14	2.4	14	90	5	50	8	11	0	79	0.94
14470071--14470104	15	2.3	15	90	10	52	8	11	0	79	0.94
14470178--14470233	5	11.0	5	87	12	71	78	0	3	17	0.89
14470178--14470240	19	3.3	18	84	10	72	79	0	4	15	0.90
14470516--14470557	19	2.2	20	78	8	50	47	11	11	28	1.76
14471083--14471147	3	21.7	3	87	6	96	63	0	4	32	1.15
14471263--14471311	25	1.9	26	87	4	73	26	24	22	26	2.00
14471231--14471324	26	3.7	25	73	8	82	30	23	21	24	1.99
14474411--14474450	13	3.0	13	85	7	62	37	7	25	30	1.83
14474415--14474466	18	2.8	18	77	13	52	38	9	21	30	1.85
14474512--14474640	19	6.8	19	76	7	120	21	0	35	41	1.59
14474530--14474637	57	1.9	57	84	3	146	20	0	36	42	1.59
14474610--14474656	19	2.5	19	85	0	58	17	2	36	44	1.60
14474687--14474722	18	2.0	18	100	0	72	22	5	33	38	1.77
14476043--14476304	144	1.8	142	80	10	309	35	16	13	33	1.88
14478804--14479084	140	2.0	138	86	2	384	29	18	11	40	1.86
14480222--14480257	2	18.0	2	88	0	54	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14480303--14480347	2	22.5	2	100	0	90	0	48	0	51	1.00
14480547--14480613	22	3.2	21	72	12	66	4	14	1	79	0.97
14483741--14483798	21	2.8	22	75	17	61	36	1	1	60	1.17
14483745--14483805	22	2.8	21	71	16	52	40	1	1	55	1.19
14489533--14489561	11	2.6	11	100	0	58	68	0	13	17	1.20
14492566--14492643	22	3.5	22	70	20	56	21	5	3	69	1.25
14492851--14492893	18	2.4	18	80	3	52	46	6	34	11	1.67
14500867--14500919	15	3.3	16	84	5	63	81	5	11	1	0.94
14501197--14501244	22	2.2	22	84	0	60	27	14	20	37	1.92
14501254--14501542	107	2.7	106	81	5	348	31	16	14	37	1.89
14501538--14501622	39	2.2	40	82	2	100	29	9	16	44	1.79
14501763--14501902	40	3.5	40	78	5	122	26	14	15	43	1.85
14501940--14502071	40	3.3	40	76	5	115	28	16	15	40	1.89
14502227--14502255	3	9.7	3	100	0	58	34	0	0	65	0.93
14503137--14503207	9	7.3	10	72	10	58	19	1	8	70	1.21
14509624--14509672	20	2.7	18	75	25	57	2	38	0	59	1.09
14510374--14510441	5	13.8	5	76	14	61	73	0	5	20	1.04
14510375--14510441	25	2.7	25	86	2	82	73	0	5	20	1.04
14510368--14510464	45	2.1	46	81	11	110	72	0	7	20	1.08
14510494--14510518	13	1.9	13	100	0	50	84	8	0	8	0.79
14513030--14513102	21	3.5	20	75	18	76	32	6	4	56	1.45
14513058--14513082	13	1.9	13	100	0	50	36	8	0	56	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14514867--14514911	14	3.2	15	72	15	51	51	0	11	37	1.38
14517446--14517505	27	2.2	27	85	11	79	50	1	1	46	1.21
14517551--14517624	29	2.6	29	84	0	103	55	4	1	39	1.27
14517786--14517822	18	2.1	18	89	0	56	48	0	0	51	1.00
14517777--14517863	29	3.0	29	72	3	77	51	5	1	41	1.33
14517895--14517930	17	2.2	16	90	5	54	55	0	0	44	0.99
14518021--14518107	29	3.0	29	74	0	93	50	5	2	41	1.39
14518193--14518233	21	2.0	21	90	0	64	46	2	2	48	1.28
14518285--14518406	28	4.2	28	71	19	92	54	2	3	39	1.30
14518285--14518406	58	2.1	57	82	10	142	54	2	3	39	1.30
14518425--14518535	11	10.5	11	65	9	52	54	3	4	36	1.38
14518431--14518497	29	2.4	29	80	9	68	56	2	7	32	1.42
14518500--14518696	21	9.7	21	76	9	176	44	4	2	49	1.34
14518496--14518660	83	2.0	84	83	3	208	44	5	1	47	1.36
14518500--14518671	62	2.8	63	79	6	206	44	5	1	48	1.35
14518652--14518693	15	2.8	16	80	20	54	45	0	2	52	1.13
14518616--14518702	36	2.4	36	83	7	115	47	1	2	49	1.21
14518658--14518711	21	2.7	20	75	18	58	44	0	1	53	1.11
14520412--14520454	19	2.3	19	88	8	61	74	4	4	16	1.16
14520420--14520464	19	2.4	18	82	10	54	77	2	6	13	1.05
14520507--14520569	26	2.5	25	83	14	85	42	1	3	52	1.27
14520643--14520728	21	3.8	21	77	14	82	45	4	1	48	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14520647--14520728	22	3.6	23	76	15	89	42	4	1	51	1.31
14522972--14523031	29	2.1	29	83	0	75	55	10	3	31	1.50
14527039--14527140	46	2.2	46	78	3	107	31	10	15	42	1.82
14529630--14529674	22	2.0	23	83	8	58	62	0	0	37	0.96
14555459--14555516	18	3.2	18	82	0	71	34	8	10	46	1.69
14555423--14555586	70	2.4	69	79	9	174	39	10	9	40	1.72
14555472--14555648	17	10.3	17	75	9	101	39	10	12	36	1.79
14555653--14555754	17	6.1	17	76	13	77	44	10	12	32	1.77
14555576--14555795	84	2.6	85	74	10	218	42	10	14	32	1.80
14555643--14555751	34	3.2	34	77	11	91	44	11	13	30	1.80
14557341--14557555	57	3.8	56	79	5	218	37	10	5	46	1.61
14557481--14557505	12	2.1	12	100	0	50	44	0	0	56	0.99
14557572--14557627	26	2.2	26	84	9	71	17	3	3	75	1.10
14558773--14558805	6	5.5	6	100	0	66	33	0	33	33	1.58
14559685--14559797	18	6.4	18	73	10	90	37	8	9	44	1.69
14559650--14559832	70	2.6	69	82	3	215	37	10	10	41	1.74
14559630--14559810	17	10.6	17	73	4	71	39	11	9	40	1.73
14559881--14559924	17	2.6	18	78	10	56	40	6	18	34	1.77
14559867--14559946	34	2.4	34	76	4	81	45	11	12	31	1.77
14561383--14561543	57	2.9	55	82	7	180	36	10	8	44	1.70
14561336--14561543	113	1.8	116	83	7	282	35	10	8	46	1.67
14561404--14561543	57	2.5	56	85	3	183	37	11	8	42	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14563634--14563804	17	10.0	17	73	7	98	38	12	10	38	1.77
14563636--14563816	52	3.5	52	77	10	167	38	12	11	37	1.79
14563790--14563823	17	2.1	17	88	5	52	35	11	17	35	1.87
14565647--14565816	17	10.0	17	74	5	112	38	12	10	38	1.78
14565649--14565816	70	2.5	69	76	6	164	38	12	10	39	1.77
14565696--14565816	52	2.3	53	83	5	149	38	14	9	38	1.79
14565814--14565851	18	2.1	18	90	0	58	44	13	5	36	1.66
14565853--14565899	16	2.9	16	81	6	58	44	6	19	29	1.75
14565659--14565955	17	17.4	17	71	9	95	40	10	10	38	1.75
14566039--14566084	21	2.1	22	88	4	67	41	21	0	36	1.54
14568310--14568408	42	2.3	43	81	8	105	39	20	11	29	1.87
14568727--14568761	17	2.0	18	88	5	54	5	34	0	60	1.21
14572838--14572893	29	2.0	28	89	3	85	33	14	10	41	1.80
14578818--14578867	23	2.1	23	88	3	73	42	4	12	42	1.60
14578842--14579008	55	2.9	56	79	12	180	38	7	5	47	1.57
14584842--14584896	30	1.9	30	85	7	78	5	12	7	74	1.20
14585018--14585098	28	2.9	28	78	7	83	33	16	22	28	1.95
14585357--14585659	104	2.9	103	81	6	371	41	19	11	28	1.85
14585356--14585659	52	5.9	52	83	6	336	41	19	11	28	1.85
14586466--14586497	11	2.8	12	90	9	50	0	18	0	81	0.70
14590749--14590817	28	2.5	28	92	0	111	31	13	26	28	1.93
14591526--14591585	3	20.0	3	100	0	120	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14591799--14591900	5	19.0	5	71	20	64	20	4	0	73	1.07
14591792--14591900	32	3.4	32	76	14	91	21	5	0	72	1.10
14592588--14592641	26	2.2	24	81	18	60	25	7	0	66	1.17
14593688--14593736	20	2.5	20	83	6	55	38	2	8	51	1.43
14597698--14597800	41	2.5	41	84	3	127	54	11	5	28	1.59
14598464--14598501	19	2.0	19	89	0	58	71	10	2	15	1.25
14600035--14600063	13	2.1	14	93	6	51	68	0	0	31	0.89
14600484--14600522	19	2.1	19	90	4	62	51	15	10	23	1.73
14600506--14600550	23	2.0	23	95	0	81	57	8	8	24	1.57
14601997--14602032	15	2.4	15	95	0	63	63	13	8	13	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100