genome.fa.s168.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17943224

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   

This is table  68  of  100  ( 11983 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12175109--12175188	27	3.1	27	61	23	64	35	15	12	37	1.85
12178614--12178877	110	2.4	110	94	0	474	41	14	11	32	1.81
12182020--12182071	19	3.1	17	86	10	63	25	3	0	71	1.03
12182078--12182102	8	3.1	8	100	0	50	28	0	0	72	0.86
12182922--12182953	5	6.4	5	100	0	64	18	0	0	81	0.70
12183374--12183425	20	2.7	19	86	13	79	53	0	0	46	1.00
12183377--12183422	21	2.2	21	96	3	85	52	0	0	47	1.00
12190742--12192293	159	9.8	159	75	8	945	42	15	9	32	1.78
12191063--12192294	159	7.8	159	76	7	995	42	15	9	32	1.78
12191228--12192074	469	1.8	469	83	2	1128	43	14	8	32	1.76
12194099--12194146	15	3.2	14	79	8	51	41	10	0	47	1.37
12194552--12194644	48	1.9	48	88	0	141	24	31	10	33	1.90
12198165--12198207	12	3.8	12	81	9	54	4	11	0	83	0.78
12198165--12198205	21	1.9	21	90	5	64	4	12	0	82	0.81
12198240--12198300	25	2.3	28	83	8	74	3	22	0	73	0.97
12198239--12198299	13	4.6	12	73	18	50	3	21	0	75	0.94
12198388--12198423	18	1.9	19	94	5	65	0	19	0	80	0.71
12198386--12198428	16	2.8	15	83	13	52	0	16	0	83	0.64
12198773--12198845	33	2.2	33	100	0	146	21	10	38	28	1.88
12206641--12206705	26	2.4	26	80	14	69	50	1	1	46	1.20
12214543--12214567	12	2.1	12	100	0	50	0	36	0	64	0.94
12214799--12214846	23	2.1	22	92	3	78	56	10	2	31	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12214799--12214841	10	4.0	10	83	16	59	58	11	2	27	1.46
12215049--12215084	8	4.5	8	86	13	56	13	0	2	83	0.76
12215923--12216033	25	4.6	25	81	10	140	35	13	11	39	1.81
12215948--12216054	46	2.3	47	88	1	162	36	14	10	39	1.80
12215910--12216057	25	6.4	22	68	19	72	35	14	11	38	1.82
12217190--12217283	9	10.8	9	77	11	72	8	17	0	74	1.05
12217209--12217262	25	2.2	25	83	6	65	5	20	0	74	1.02
12217176--12217270	8	11.2	8	76	7	55	7	20	0	72	1.08
12217214--12217285	36	2.0	36	88	0	108	5	18	0	76	0.97
12217222--12217270	17	2.9	17	85	11	73	2	18	0	79	0.83
12217222--12217278	17	3.4	16	83	9	69	3	15	0	80	0.84
12219593--12219636	18	2.4	18	88	0	61	40	18	11	29	1.85
12219852--12219882	15	2.1	15	93	0	53	22	0	12	64	1.27
12221411--12221788	198	1.9	196	79	11	425	33	10	6	50	1.62
12222921--12222953	8	4.1	8	88	11	50	15	0	0	84	0.61
12222921--12222952	15	2.1	16	94	5	57	15	0	0	84	0.63
12222923--12222957	18	2.0	17	94	5	61	14	0	0	85	0.59
12222923--12222958	10	3.9	10	82	17	51	16	0	0	83	0.65
12222528--12223068	274	2.0	269	94	1	947	33	20	8	37	1.84
12224835--12224867	17	1.9	17	93	0	57	39	21	0	39	1.53
12225404--12225441	2	20.0	2	89	10	62	47	0	0	52	1.00
12241668--12241718	14	3.4	14	75	19	50	27	3	1	66	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12243259--12243849	50	12.0	49	80	5	561	37	20	12	29	1.89
12243259--12243849	149	4.0	150	79	7	604	37	20	12	29	1.89
12256012--12256261	126	2.0	126	90	0	392	36	17	15	31	1.91
12256356--12256408	21	2.5	20	85	8	70	5	0	18	75	0.99
12257675--12258081	216	1.9	214	79	9	467	32	11	7	47	1.69
12258047--12258095	20	2.4	21	82	3	55	24	2	2	71	1.07
12259168--12259205	13	2.9	13	80	11	51	15	0	2	81	0.80
12259176--12259223	20	2.3	20	80	19	55	18	0	4	77	0.93
12260595--12260638	20	2.2	20	84	8	54	50	0	0	50	1.00
12261488--12261591	40	2.6	39	82	7	131	53	7	0	38	1.30
12261527--12261583	28	2.0	29	86	3	80	50	5	0	43	1.24
12261814--12261872	17	3.8	17	72	19	56	61	5	0	33	1.18
12261925--12262411	9	51.6	9	65	16	62	33	2	5	58	1.34
12262063--12262126	29	2.2	30	88	8	96	32	0	10	56	1.34
12262160--12262281	37	3.2	37	82	12	131	33	0	4	60	1.24
12262353--12262412	8	6.8	9	77	22	65	28	1	0	70	0.97
12262354--12262415	18	3.4	19	91	4	92	27	1	0	70	0.96
12261934--12262412	10	50.6	9	67	19	137	32	2	5	59	1.34
12265653--12265688	12	2.8	12	91	8	54	38	2	5	52	1.39
12266249--12266336	44	2.0	44	86	4	124	19	6	17	56	1.62
12266496--12266586	42	2.2	43	82	9	109	42	10	1	45	1.46
12267753--12267785	16	2.0	17	94	5	59	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12270363--12270394	15	2.1	15	94	0	55	15	0	0	84	0.63
12270984--12271237	120	2.1	120	92	2	422	35	9	5	50	1.56
12271128--12271196	28	2.4	29	80	9	70	40	4	1	53	1.30
12271246--12271295	17	3.0	17	82	8	59	20	6	0	74	1.03
12271248--12271295	21	2.2	22	85	3	62	20	6	0	72	1.05
12272955--12273199	43	5.6	42	74	9	129	42	14	9	33	1.78
12272998--12273208	43	4.8	44	76	12	175	42	15	10	31	1.80
12272950--12273208	87	3.0	84	80	7	254	42	14	10	32	1.80
12282432--12282473	19	2.2	19	83	8	50	19	2	4	73	1.12
12282479--12282520	15	2.8	15	89	7	59	28	0	0	71	0.86
12282546--12282622	36	2.1	36	81	11	86	74	2	2	20	1.07
12283542--12283569	3	9.3	3	100	0	56	67	0	0	32	0.91
12294209--12294247	18	2.2	17	86	4	51	15	7	0	76	0.99
12295754--12295803	8	6.6	8	86	6	52	76	4	2	18	1.04
12295757--12295820	7	9.0	7	89	5	69	73	3	1	21	1.06
12296628--12296679	20	2.7	19	77	11	52	48	0	0	51	1.00
12296620--12296685	33	2.0	34	82	8	82	46	0	0	53	1.00
12296687--12296721	17	2.1	17	89	5	54	60	0	5	34	1.21
12302755--12302793	19	2.0	20	95	5	71	48	0	5	46	1.24
12302758--12302815	18	3.1	19	83	11	59	46	3	1	48	1.29
12303704--12303759	29	2.0	28	85	3	76	41	1	7	50	1.40
12303712--12303776	28	2.3	29	83	2	78	47	3	3	46	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12307064--12307112	23	2.1	23	96	0	89	40	10	8	40	1.69
12308380--12308448	19	3.6	19	75	14	61	28	1	10	59	1.39
12308453--12308527	29	2.7	26	75	16	71	37	6	2	53	1.41
12308498--12308541	18	2.4	18	78	10	54	36	2	2	59	1.23
12308466--12308533	29	2.2	32	78	19	83	38	5	2	52	1.41
12308707--12308764	19	3.1	19	79	0	71	46	1	1	50	1.22
12308492--12308930	219	2.0	221	90	4	692	37	6	9	46	1.63
12309174--12309209	2	18.0	2	100	0	72	50	0	0	50	1.00
12313050--12313087	18	2.1	19	90	5	60	28	13	0	57	1.36
12313246--12313278	16	2.1	16	94	0	57	15	33	12	39	1.84
12315498--12315532	15	2.4	15	90	4	54	42	0	0	57	0.99
12316073--12316119	22	2.1	22	84	0	58	42	0	2	55	1.12
12317252--12317356	42	2.5	42	87	4	140	31	15	13	40	1.85
12317560--12317599	17	2.4	16	84	8	53	80	0	0	20	0.72
12319736--12319787	24	2.1	25	82	7	61	42	1	0	55	1.10
12319885--12319988	41	2.5	41	85	6	129	30	15	15	38	1.88
12320743--12320784	19	2.2	19	87	8	59	26	7	14	52	1.67
12322861--12322902	13	3.7	11	82	14	50	23	7	2	66	1.28
12322871--12322900	13	2.3	13	94	0	51	23	6	3	66	1.30
12322927--12322978	27	2.0	25	82	10	61	15	13	1	69	1.28
12324697--12325150	58	7.7	58	77	9	427	42	6	12	38	1.68
12324705--12325150	119	3.7	118	87	5	587	41	6	12	39	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12325929--12325962	14	2.4	14	90	0	50	64	0	5	29	1.17
12327685--12327726	21	2.0	21	85	0	57	59	7	0	33	1.25
12327694--12327737	13	3.3	13	81	15	54	65	2	0	31	1.05
12327692--12327736	21	2.1	21	84	8	56	64	2	0	33	1.06
12327933--12328541	120	5.1	119	78	6	498	46	15	20	17	1.84
12327933--12328541	240	2.5	241	78	6	580	46	15	20	17	1.84
12328736--12328770	18	1.9	18	94	0	61	34	14	11	40	1.82
12328789--12328848	17	3.5	17	81	4	68	38	20	13	28	1.90
12329923--12329994	11	6.5	11	78	10	58	2	8	4	84	0.84
12329931--12329996	16	4.3	14	75	20	69	3	6	4	86	0.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100